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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:556.0 nTPM
HPA Brain:399.3 nTPM
GTEx:556.0 nTPM
FANTOM5:1054.9 Scaled Tags Per Million
Pig:594.5 nTPM
Mouse:1217.1 nTPM
Allen mouse:10.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

399.3
Sample id Sample description nTPM
Amygdala
nTPM: 395.6
2814 Male, age 76, right hemisphere 490.7
2514 Male, age 75, right hemisphere 429.1
1987 Female, age 91, left hemisphere 390.3
2695 Female, age 67, right hemisphere 366.0
2517 Female, age 94, left hemisphere 302.0
Basal amygdala
nTPM: 308.8
2609 Male, age 75, right hemisphere 417.5
2110 Male, age 80, left hemisphere 356.3
2243 Female, age 91, right hemisphere 349.1
1955 Male, age 76, both hemispheres 311.2
2685 Female, age 94, left hemisphere 235.3
2827 Female, age 67, right hemisphere 183.7
Central amygdala
nTPM: 399.3
2515 Male, age 75, right hemisphere 575.5
2701 Female, age 91, right hemisphere 411.4
1905 Male, age 76, both hemispheres 393.2
2239 Male, age 80, left hemisphere 379.3
2826 Female, age 94, left hemisphere 237.0
Corticomedial amygdala
nTPM: 338.2
2428 Male, age 75, right hemisphere 479.5
2829 Male, age 80, left hemisphere 375.2
2242 Female, age 91, right hemisphere 372.8
2429 Female, age 94, left hemisphere 340.8
2240 Male, age 76, both hemispheres 289.9
2535 Female, age 67, right hemisphere 171.1
Lateral amygdala
nTPM: 319.9
2516 Male, age 75, right hemisphere 414.4
1883 Male, age 76, both hemispheres 366.1
2255 Female, age 91, right hemisphere 337.6
2256 Male, age 80, left hemisphere 332.9
2830 Female, age 67, right hemisphere 260.0
2534 Female, age 94, left hemisphere 208.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

556.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 556.0
Samples: 181

Max nTPM: 1840.6
Min nTPM: 208.8
Std nTPM: 239.2
Median nTPM: 513.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1840.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1304.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1250.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1165.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1117.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1103.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1048.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1028.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1021.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1019.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 946.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 944.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 931.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 925.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 922.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 910.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 846.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 840.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 814.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 807.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 807.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 801.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 797.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 788.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 782.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 782.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 779.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 779.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 774.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 774.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 766.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 757.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 752.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 747.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 741.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 724.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 720.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 704.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 694.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 690.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 689.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 688.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 688.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 686.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 679.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 676.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 668.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 667.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 666.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 663.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 663.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 662.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 659.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 658.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 655.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 655.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 655.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 654.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 653.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 630.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 627.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 623.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 617.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 606.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 605.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 604.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 603.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 601.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 600.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 598.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 585.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 582.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 578.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 555.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 548.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 545.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 544.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 543.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 543.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 542.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 542.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 537.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 526.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 524.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 520.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 517.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 516.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 516.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 514.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 514.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 513.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 508.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 504.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 502.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 500.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 498.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 498.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 493.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 488.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 488.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 488.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 488.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 487.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 487.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 481.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 474.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 470.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 468.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 466.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 465.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 459.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 456.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 456.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 455.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 452.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 452.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 447.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 438.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 435.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 426.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 425.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 420.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 412.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 412.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 410.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 406.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 402.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 397.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 395.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 393.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 391.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 391.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 390.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 388.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 384.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 384.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 383.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 382.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 379.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 374.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 370.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 370.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 370.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 367.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 364.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 350.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 350.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 349.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 346.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 345.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 345.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 341.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 337.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 335.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 324.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 311.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 308.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 305.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 300.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 299.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 294.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 293.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 284.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 283.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 282.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 282.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 278.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 274.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 272.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 271.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 270.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 268.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 263.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 260.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 254.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 248.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 230.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 228.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 219.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 215.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 208.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1054.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1054.9
FF:10151-102I7 76 years, female 1054.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

594.5
Pig sample Sample description nTPM
Amygdala
nTPM: 594.5
Samples: 4

Max nTPM: 691.4
Min nTPM: 525.3
Sample A Female 525.3
Sample B Female 691.4
Sample C Male 622.8
Sample D Male 538.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1217.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1217.1
Samples: 4

Max nTPM: 1577.2
Min nTPM: 923.4
Sample A Male 923.4
Sample B Male 1126.5
Sample C Female 1577.2
Sample D Female 1241.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.8
67978757 Antisense, RP_040923_01_G08, Mouse strain C57BL/6J (56 days, male) 15.2
74047918 Antisense, RP_051214_02_D03, Mouse strain C57BL/6J (56 days, male) 11.9
74988768 Antisense, RP_060315_05_H12, Mouse strain C57BL/6J (56 days, male) 8.3
70919872 Antisense, RP_050713_02_C01, Mouse strain C57BL/6J (56 days, male) 7.6

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