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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
428.4
nTPM
HPA Brain:
353.5
nTPM
GTEx:
428.4
nTPM
FANTOM5:
687.5
Scaled Tags Per Million
Pig:
903.3
nTPM
Mouse:
1351.7
nTPM
Allen mouse:
13.2
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA007316
Antibody HPA007571
Antibody CAB008636
Glial cells
High
Medium
High
Neuronal cells
Not detected
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
353.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 296.2
2529
Female, age 94, left hemisphere
365.9
2621
Female, age 67, right hemisphere
305.3
1911
Female, age 85, right hemisphere
300.1
1855
Male, age 76, left hemisphere
291.5
1898
Male, age 80, left hemisphere
278.4
2148
Female, age 91, left hemisphere
236.1
Dentate gyrus nTPM: 255.3
2010
Male, age 76, both hemispheres
334.5
2246
Female, age 85, both hemispheres
315.9
1927
Female, age 91, both hemispheres
235.0
2528
Male, age 74, both hemispheres
234.4
2530
Female, age 94, left hemisphere
227.5
2531
Female, age 67, both hemispheres
184.5
Entorhinal gyrus nTPM: 334.3
2117
Female, age 91, right hemisphere
469.1
1938
Female, age 85, left hemisphere
439.9
2686
Male, age 75, right hemisphere
384.7
1787
Male, age 76, left hemisphere
268.7
2764
Male, age 80, right hemisphere
266.4
2613
Female, age 94, left hemisphere
177.2
Hippocampus, CA1 nTPM: 253.4
2527
Male, age 74, both hemispheres
341.5
1873
Female, age 85, both hemispheres
250.3
2082
Female, age 91, right hemisphere
240.3
2749
Male, age 80, left hemisphere
230.2
2045
Male, age 76, both hemispheres
204.8
Hippocampus, CA2 nTPM: 266.0
1940
Female, age 85, left hemisphere
306.4
2113
Female, age 91, right hemisphere
284.7
2249
Male, age 74, both hemispheres
284.7
2437
Female, age 94, left hemisphere
275.5
1963
Male, age 80, left hemisphere
250.8
1892
Male, age 76, both hemispheres
194.1
Hippocampus, CA3 nTPM: 248.1
1891
Female, age 85, both hemispheres
322.8
2436
Male, age 74, both hemispheres
305.1
1867
Male, age 76, both hemispheres
288.3
2861
Female, age 67, both hemispheres
228.2
2137
Male, age 80, left hemisphere
209.3
2620
Female, age 94, left hemisphere
134.8
Parahippocampal cortex nTPM: 353.5
1933
Female, age 85, both hemispheres
512.2
2692
Male, age 74, both hemispheres
471.4
2622
Female, age 67, right hemisphere
372.3
2693
Female, age 94, both hemispheres
362.3
2250
Female, age 67, right hemisphere
350.8
2532
Female, age 72, left hemisphere
333.3
1990
Female, age 91, right hemisphere
298.8
2245
Female, age 91, both hemispheres
293.3
1850
Male, age 80, both hemispheres
275.7
2018
Male, age 76, both hemispheres
264.6
Perirhinal gyrus nTPM: 316.6
1841
Female, age 85, right hemisphere
426.7
1794
Male, age 80, right hemisphere
316.6
1847
Female, age 91, left hemisphere
297.6
2521
Female, age 94, right hemisphere
294.7
2848
Male, age 76, right hemisphere
247.3
Subiculum nTPM: 337.5
2042
Male, age 76, both hemispheres
388.6
2619
Male, age 74, both hemispheres
369.6
1977
Female, age 85, both hemispheres
327.8
2729
Female, age 91, right hemisphere
325.6
2438
Female, age 94, left hemisphere
308.7
1901
Male, age 80, both hemispheres
304.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
428.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 428.4
Samples: 197
Max nTPM: 1300.3
Min nTPM: 116.4
Std nTPM: 195.7
Median nTPM: 382.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
1300.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
1106.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
1039.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
1015.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
967.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
960.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
937.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
917.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
901.8
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
853.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
844.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
835.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
811.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
784.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
753.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
706.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
696.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
684.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
673.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
660.1
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
636.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
635.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
631.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
627.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
622.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
618.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
612.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
610.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
607.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
605.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
596.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
588.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
585.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
581.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
567.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
562.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
560.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
557.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
556.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
553.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
544.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
543.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
541.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
540.6
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
540.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
537.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
532.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
523.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
518.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
513.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
512.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
506.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
498.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
494.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
487.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
486.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
481.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
479.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
478.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
476.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
475.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
475.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
474.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
471.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
468.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
468.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
466.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
458.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
452.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
452.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
451.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
443.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
435.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
435.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
433.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
432.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
430.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
430.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
427.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
426.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
422.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
422.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
421.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
416.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
415.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
415.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
415.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
410.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
409.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
408.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
406.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
399.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
388.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
387.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
386.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
386.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
383.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
382.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
382.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
382.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
378.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
377.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
375.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
375.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
374.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
373.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
369.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
369.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
365.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
364.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
363.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
357.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
357.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
356.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
353.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
352.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
350.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
350.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
349.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
346.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
345.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
343.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
343.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
341.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
341.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
329.2
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
328.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
326.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
326.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
323.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
322.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
318.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
316.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
313.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
313.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
308.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
307.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
303.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
301.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
300.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
299.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
297.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
296.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
293.8
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
293.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
292.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
290.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
288.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
287.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
286.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
286.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
282.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
282.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
282.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
282.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
280.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
280.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
277.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
275.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
272.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
271.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
271.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
271.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
269.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
268.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
266.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
266.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
262.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
251.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
251.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
249.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
249.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
247.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
245.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
238.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
237.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
235.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
232.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
229.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
224.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
222.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
221.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
220.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
217.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
216.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
211.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
210.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
208.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
208.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
206.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
191.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
191.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
186.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
148.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
138.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
129.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
116.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1351.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 1351.7
Samples: 4
Max nTPM: 1504.8
Min nTPM: 1225.0
Sample A
Male
1359.1
Sample B
Male
1225.0
Sample C
Female
1504.8
Sample D
Female
1317.9
Hippocampal formation nTPM: 1231.8
Samples: 4
Max nTPM: 1298.1
Min nTPM: 1080.1
Sample A
Male
1282.6
Sample B
Male
1080.1
Sample C
Female
1266.2
Sample D
Female
1298.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.