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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
32.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 20.1
2090
Male, age 80, both hemispheres
23.4
2188
Female, age 91, both hemispheres
20.7
2301
Female, age 85, both hemispheres
18.3
1984
Male, age 76, both hemispheres
18.0
Dorsal cochlear nucleus nTPM: 24.3
2058
Male, age 76, both hemispheres
27.2
2802
Male, age 74, right hemisphere
25.9
2378
Male, age 80, both hemispheres
25.2
2370
Male, age 61, both hemispheres
21.8
2187
Female, age 91, both hemispheres
21.3
Dorsal tegmental nucleus nTPM: 22.7
2358
Male, age 61, both hemispheres
26.6
2083
Male, age 80, both hemispheres
24.9
2326
Male, age 74, both hemispheres
23.6
1936
Male, age 76, left hemisphere
15.6
Dorsolateral tegmental area nTPM: 24.1
2337
Male, age 61, both hemispheres
38.1
2360
Male, age 74, both hemispheres
24.7
2654
Male, age 80, both hemispheres
22.7
2751
Female, age 85, both hemispheres
20.2
2141
Male, age 76, both hemispheres
14.7
Kolliker-Fuse nucleus nTPM: 19.9
2163
Male, age 80, both hemispheres
22.5
2315
Male, age 76, right hemisphere
19.3
2793
Female, age 91, left hemisphere
18.0
Lateral lemniscal nuclei nTPM: 20.0
2746
Female, age 85, left hemisphere
27.4
2036
Male, age 80, both hemispheres
22.9
2320
Female, age 91, left hemisphere
20.2
2453
Male, age 74, right hemisphere
15.1
2169
Male, age 76, both hemispheres
14.3
Lateral parabrachial nucleus nTPM: 32.6
2790
Male, age 61, both hemispheres
43.9
2792
Male, age 76, both hemispheres
34.7
2013
Male, age 80, both hemispheres
31.7
2139
Female, age 85, right hemisphere
20.2
Lateral vestibular nucleus nTPM: 23.5
2184
Male, age 76, both hemispheres
26.7
2311
Male, age 80, both hemispheres
20.3
Locus coeruleus nTPM: 16.1
2720
Male, age 74, both hemispheres
20.9
2162
Male, age 80, both hemispheres
18.7
2123
Female, age 91, both hemispheres
18.1
2317
Female, age 72, unknown
15.1
2014
Male, age 55, unknown
13.7
2788
Male, age 74, unknown
13.5
1980
Male, age 76, both hemispheres
12.7
Medial parabrachial nucleus nTPM: 23.4
2156
Male, age 61, both hemispheres
35.3
2786
Male, age 76, both hemispheres
21.2
2463
Female, age 85, right hemisphere
21.1
2170
Female, age 91, both hemispheres
20.7
2854
Male, age 80, both hemispheres
18.6
Medial periolivary nuclei nTPM: 19.3
2081
Male, age 80, both hemispheres
31.1
2791
Male, age 74, right hemisphere
19.7
2458
Female, age 91, both hemispheres
19.0
2063
Male, age 76, both hemispheres
18.1
2171
Female, age 85, both hemispheres
8.6
Motor facial nucleus nTPM: 18.2
2126
Male, age 61, both hemispheres
21.6
2697
Female, age 85, both hemispheres
20.1
2365
Male, age 74, right hemisphere
20.0
2327
Male, age 80, both hemispheres
18.3
2795
Female, age 91, both hemispheres
15.6
2062
Male, age 76, both hemispheres
13.7
Motor trigeminal nucleus nTPM: 20.8
2309
Male, age 76, both hemispheres
21.8
2079
Male, age 80, both hemispheres
21.4
2560
Male, age 74, both hemispheres
20.9
2321
Female, age 91, both hemispheres
20.2
2335
Male, age 61, both hemispheres
19.8
Nuclei of the trapezoid body nTPM: 15.1
2166
Male, age 80, both hemispheres
23.7
1983
Male, age 76, both hemispheres
16.6
2368
Female, age 91, both hemispheres
16.1
2159
Male, age 61, both hemispheres
11.2
2735
Female, age 85, both hemispheres
8.1
Nucleus raphe magnus nTPM: 17.5
2051
Male, age 76, both hemispheres
27.6
2459
Female, age 91, both hemispheres
25.6
2328
Male, age 80, both hemispheres
23.5
2455
Male, age 74, both hemispheres
15.2
2172
Female, age 85, both hemispheres
7.5
2160
Male, age 61, both hemispheres
5.7
Paramedian reticular nucleus nTPM: 19.3
2052
Male, age 76, both hemispheres
21.5
2057
Male, age 80, both hemispheres
21.2
2313
Male, age 61, both hemispheres
20.7
2050
Female, age 85, both hemispheres
13.7
Pedunculopontine tegmental nucleus nTPM: 23.9
2338
Male, age 61, both hemispheres
28.3
2334
Male, age 80, both hemispheres
24.2
1921
Female, age 85, both hemispheres
19.2
Pontine nuclei nTPM: 20.8
2454
Male, age 74, left hemisphere
33.1
2115
Male, age 80, left hemisphere
30.0
1968
Male, age 76, left hemisphere
23.8
2319
Female, age 91, both hemispheres
20.3
2109
Female, age 72, unknown
17.8
1863
Male, age 55, unknown
16.8
2727
Male, age 61, right hemisphere
13.6
2787
Female, age 85, both hemispheres
11.2
Pontine raphe nucleus nTPM: 16.4
2853
Male, age 76, midline
18.9
2122
Female, age 85, midline
13.9
Posteroventral cochlear nucleus nTPM: 24.5
2070
Male, age 76, both hemispheres
30.4
2341
Male, age 80, both hemispheres
25.8
2371
Male, age 61, both hemispheres
24.8
2135
Female, age 91, both hemispheres
23.0
2752
Female, age 85, both hemispheres
18.2
Principal sensory trigeminal nucleus nTPM: 16.3
2324
Male, age 76, both hemispheres
23.5
2367
Female, age 91, left hemisphere
19.5
2008
Male, age 80, left hemisphere
14.1
2158
Male, age 61, both hemispheres
8.0
Reticular pontine nucleus, caudal nTPM: 22.9
2559
Male, age 74, both hemispheres
24.6
2457
Female, age 91, both hemispheres
24.5
2092
Male, age 76, both hemispheres
22.9
2332
Male, age 80, right hemisphere
19.6
Reticular pontine nucleus, oral nTPM: 22.1
1939
Male, age 80, both hemispheres
25.5
2167
Male, age 76, both hemispheres
24.2
2366
Female, age 91, both hemispheres
23.3
2361
Male, age 74, both hemispheres
19.4
2012
Female, age 85, both hemispheres
18.0
Reticulotegmental nucleus nTPM: 18.2
2452
Male, age 74, both hemispheres
22.6
2333
Male, age 80, both hemispheres
19.9
2322
Female, age 91, both hemispheres
18.5
2325
Male, age 76, both hemispheres
11.8
Spinal trigeminal nucleus, oral nTPM: 25.5
1978
Male, age 76, both hemispheres
31.5
2164
Male, age 80, both hemispheres
25.8
2737
Female, age 85, both hemispheres
19.1
Subcoeruleus area nTPM: 20.8
2451
Male, age 74, both hemispheres
26.8
2369
Female, age 85, left hemisphere
24.6
2323
Female, age 91, left hemisphere
19.5
2089
Male, age 76, left hemisphere
17.1
1958
Male, age 80, both hemispheres
16.1
Superior olive nTPM: 19.4
2020
Male, age 76, both hemispheres
24.8
2329
Male, age 80, right hemisphere
22.9
2364
Male, age 74, right hemisphere
19.9
2561
Female, age 91, both hemispheres
15.5
1875
Female, age 85, both hemispheres
13.8
Ventral periolivary nuclei nTPM: 15.7
2023
Male, age 76, both hemispheres
27.7
2165
Male, age 80, both hemispheres
15.3
2794
Female, age 91, left hemisphere
10.4
2130
Female, age 85, both hemispheres
9.6
Ventrolateral tegmental area, A5 NE cell group nTPM: 22.8
2359
Male, age 61, both hemispheres
31.2
2161
Male, age 80, both hemispheres
24.1
2840
Female, age 85, both hemispheres
23.8
2456
Female, age 91, both hemispheres
20.7
1959
Male, age 76, both hemispheres
20.2
2449
Male, age 74, both hemispheres
16.7
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.3
Pig sample
Sample description
nTPM
Pons nTPM: 2.3
Samples: 4
Max nTPM: 4.2
Min nTPM: 0.6
Sample A
Female
1.4
Sample B
Female
4.2
Sample C
Male
3.1
Sample D
Male
0.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
