MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.6 nTPM
HPA Brain:33.0 nTPM
GTEx:23.6 nTPM
FANTOM5:172.6 Scaled Tags Per Million
Pig:2.7 nTPM
Mouse:4.7 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.0
2019 Male, age 18, unknown 39.2
2586 Male, age 75, left hemisphere 38.6
2666 Male, age 74, left hemisphere 28.5
1830 Male, age 51, unknown 27.9
2411 Female, age 72, unknown 27.1
1827 Male, age 72, unknown 26.3
2828 Female, age 72, unknown 25.0
1870 Female, age 42, unknown 23.6
1833 Male, age 53, unknown 22.5
2219 Male, age 76, both hemispheres 21.8
Dorsal raphe nucleus
nTPM: 22.8
2750 Male, age 76, both hemispheres 32.5
2016 Female, age 72, unknown 23.9
1828 Male, age 53, unknown 23.2
2047 Male, age 72, unknown 17.2
2298 Female, age 72, unknown 17.2
Inferior colliculus
nTPM: 15.9
2849 Male, age 72, unknown 17.4
1890 Male, age 53, unknown 16.7
1848 Female, age 42, unknown 15.0
2097 Female, age 72, unknown 14.6
Median raphe nucleus
nTPM: 13.2
2220 Male, age 76, midline 13.2
Periaquaductal grey, anterior
nTPM: 31.5
1947 Male, age 18, unknown 33.7
1795 Male, age 51, unknown 31.6
2502 Female, age 75, unknown 29.1
Periaquaductal grey, dorsal
nTPM: 19.1
1831 Male, age 72, unknown 21.3
2464 Female, age 72, unknown 21.1
1840 Male, age 53, unknown 18.7
2850 Male, age 76, both hemispheres 15.2
Periaquaductal grey, lateral
nTPM: 21.1
2272 Male, age 74, both hemispheres 28.8
2053 Male, age 18, unknown 20.1
2140 Male, age 76, both hemispheres 14.5
Pretectal area
nTPM: 31.4
1815 Male, age 53, unknown 48.9
2007 Male, age 72, unknown 44.2
1817 Female, age 42, unknown 37.5
2407 Male, age 75, both hemispheres 36.7
1944 Female, age 72, unknown 34.3
1816 Male, age 51, unknown 32.8
2316 Male, age 76, right hemisphere 32.8
2273 Male, age 74, both hemispheres 26.4
2825 Male, age 18, unknown 19.1
2224 Female, age 72, unknown 17.5
2667 Female, age 75, unknown 14.7
Red nucleus
nTPM: 23.4
2584 Male, age 75, left hemisphere 44.6
2785 Male, age 18, unknown 39.2
2725 Female, age 75, unknown 26.4
2823 Male, age 76, right hemisphere 25.9
1865 Male, age 51, unknown 24.3
2588 Male, age 74, left hemisphere 23.0
2503 Female, age 72, unknown 20.5
2769 Male, age 72, unknown 16.4
2227 Male, age 72, unknown 16.0
1904 Male, age 53, unknown 15.9
1954 Female, age 42, unknown 15.5
1821 Female, age 72, unknown 12.4
Substantia nigra
nTPM: 23.4
2590 Female, age 75, unknown 38.4
2583 Male, age 75, right hemisphere 36.0
2409 Female, age 72, unknown 27.8
1889 Female, age 72, unknown 25.9
1851 Male, age 51, unknown 25.1
2665 Male, age 74, both hemispheres 23.1
2241 Male, age 72, unknown 18.8
2699 Male, age 18, unknown 14.3
1916 Female, age 42, unknown 12.5
1941 Male, age 53, unknown 11.8
Superior colliculus
nTPM: 33.0
1995 Male, age 72, unknown 48.3
1913 Female, age 42, unknown 43.1
1796 Male, age 53, unknown 39.0
2668 Female, age 75, unknown 32.2
2587 Male, age 74, left hemisphere 31.9
1895 Male, age 76, right hemisphere 30.0
2664 Male, age 75, both hemispheres 29.6
2261 Male, age 18, unknown 27.6
2087 Female, age 72, unknown 26.5
1839 Male, age 51, unknown 22.1
Ventral tegmental area
nTPM: 24.2
2021 Male, age 53, unknown 32.7
2410 Female, age 72, unknown 26.6
2223 Female, age 72, unknown 24.8
1942 Male, age 51, unknown 23.7
1915 Female, age 42, unknown 20.5
2218 Male, age 76, both hemispheres 17.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.6
Samples: 139

Max nTPM: 104.7
Min nTPM: 4.2
Std nTPM: 15.7
Median nTPM: 18.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 104.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 70.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 70.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 69.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 63.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 53.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 53.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 52.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 51.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 48.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 172.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.6
FF:10158-103A5 76 years, female 172.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.7
Samples: 4

Max nTPM: 4.3
Min nTPM: 0.9
Sample A Female 3.0
Sample B Female 4.3
Sample C Male 2.5
Sample D Male 0.9
Midbrain
nTPM: 1.5
Samples: 4

Max nTPM: 2.3
Min nTPM: 0.6
Sample A Female 1.0
Sample B Female 2.2
Sample C Male 0.6
Sample D Male 2.3
Periaqueductal gray
nTPM: 1.3
Samples: 3

Max nTPM: 1.6
Min nTPM: 0.8
Sample B Female 1.6
Sample C Male 1.5
Sample D Male 0.8
Superior colliculi
nTPM: 2.0
Samples: 4

Max nTPM: 4.3
Min nTPM: 0.5
Sample A Female 1.5
Sample B Female 4.3
Sample C Male 0.5
Sample D Male 1.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.7
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.7
Sample A Male 5.1
Sample B Male 4.5
Sample C Female 3.7
Sample D Female 5.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
70593143 Antisense, RP_050331_03_G01, Mouse strain C57BL/6J (56 days, male) 0.6
72283793 Antisense, RP_051027_01_A09, Mouse strain C57BL/6J (56 days, male) 0.1

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