MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.1 nTPM
HPA Brain:24.5 nTPM
GTEx:31.1 nTPM
FANTOM5:12.9 Scaled Tags Per Million
Pig:8.8 nTPM
Mouse:10.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.2
2586 Male, age 75, left hemisphere 32.6
2019 Male, age 18, unknown 28.6
2828 Female, age 72, unknown 23.6
2411 Female, age 72, unknown 22.0
1870 Female, age 42, unknown 21.7
1827 Male, age 72, unknown 20.3
1830 Male, age 51, unknown 19.7
1833 Male, age 53, unknown 19.6
2219 Male, age 76, both hemispheres 17.0
2666 Male, age 74, left hemisphere 17.0
Dorsal raphe nucleus
nTPM: 19.5
1828 Male, age 53, unknown 21.6
2047 Male, age 72, unknown 21.4
2298 Female, age 72, unknown 19.0
2016 Female, age 72, unknown 18.1
2750 Male, age 76, both hemispheres 17.3
Inferior colliculus
nTPM: 19.2
1848 Female, age 42, unknown 21.1
2097 Female, age 72, unknown 20.2
1890 Male, age 53, unknown 19.1
2849 Male, age 72, unknown 16.5
Median raphe nucleus
nTPM: 15.4
2220 Male, age 76, midline 15.4
Periaquaductal grey, anterior
nTPM: 19.5
2502 Female, age 75, unknown 20.2
1795 Male, age 51, unknown 20.0
1947 Male, age 18, unknown 18.3
Periaquaductal grey, dorsal
nTPM: 16.5
1831 Male, age 72, unknown 18.5
2464 Female, age 72, unknown 17.2
1840 Male, age 53, unknown 16.6
2850 Male, age 76, both hemispheres 13.4
Periaquaductal grey, lateral
nTPM: 15.3
2053 Male, age 18, unknown 17.3
2272 Male, age 74, both hemispheres 15.3
2140 Male, age 76, both hemispheres 13.1
Pretectal area
nTPM: 19.9
2007 Male, age 72, unknown 25.8
1817 Female, age 42, unknown 25.4
1816 Male, age 51, unknown 21.3
1815 Male, age 53, unknown 20.2
2667 Female, age 75, unknown 19.9
1944 Female, age 72, unknown 19.3
2316 Male, age 76, right hemisphere 18.9
2407 Male, age 75, both hemispheres 18.7
2273 Male, age 74, both hemispheres 16.8
2224 Female, age 72, unknown 16.4
2825 Male, age 18, unknown 16.4
Red nucleus
nTPM: 24.5
2588 Male, age 74, left hemisphere 28.3
1821 Female, age 72, unknown 27.1
1954 Female, age 42, unknown 27.0
2769 Male, age 72, unknown 25.9
2227 Male, age 72, unknown 25.8
2503 Female, age 72, unknown 25.3
2785 Male, age 18, unknown 24.8
1865 Male, age 51, unknown 24.0
1904 Male, age 53, unknown 24.0
2725 Female, age 75, unknown 21.6
2584 Male, age 75, left hemisphere 21.1
2823 Male, age 76, right hemisphere 19.5
Substantia nigra
nTPM: 22.1
2665 Male, age 74, both hemispheres 25.1
2583 Male, age 75, right hemisphere 24.1
1941 Male, age 53, unknown 24.0
1851 Male, age 51, unknown 22.8
1916 Female, age 42, unknown 22.8
1889 Female, age 72, unknown 22.5
2409 Female, age 72, unknown 21.3
2590 Female, age 75, unknown 21.3
2699 Male, age 18, unknown 19.6
2241 Male, age 72, unknown 17.1
Superior colliculus
nTPM: 20.1
2664 Male, age 75, both hemispheres 22.8
2668 Female, age 75, unknown 22.3
2587 Male, age 74, left hemisphere 20.9
1839 Male, age 51, unknown 20.8
1895 Male, age 76, right hemisphere 20.8
2087 Female, age 72, unknown 19.8
1796 Male, age 53, unknown 19.6
2261 Male, age 18, unknown 18.8
1913 Female, age 42, unknown 18.1
1995 Male, age 72, unknown 17.3
Ventral tegmental area
nTPM: 20.7
2410 Female, age 72, unknown 23.8
2223 Female, age 72, unknown 22.2
1915 Female, age 42, unknown 20.4
1942 Male, age 51, unknown 19.4
2218 Male, age 76, both hemispheres 19.4
2021 Male, age 53, unknown 18.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.1
Samples: 139

Max nTPM: 66.2
Min nTPM: 13.7
Std nTPM: 9.4
Median nTPM: 28.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 66.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 65.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 53.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 52.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 51.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 49.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 47.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 47.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 46.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 46.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 46.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.9
FF:10158-103A5 76 years, female 12.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.8
Samples: 4

Max nTPM: 9.9
Min nTPM: 7.3
Sample A Female 9.9
Sample B Female 7.3
Sample C Male 8.6
Sample D Male 9.4
Midbrain
nTPM: 8.6
Samples: 4

Max nTPM: 10.5
Min nTPM: 7.3
Sample A Female 10.5
Sample B Female 8.6
Sample C Male 7.3
Sample D Male 7.8
Periaqueductal gray
nTPM: 8.1
Samples: 3

Max nTPM: 8.5
Min nTPM: 7.8
Sample B Female 7.9
Sample C Male 7.8
Sample D Male 8.5
Superior colliculi
nTPM: 8.2
Samples: 4

Max nTPM: 8.9
Min nTPM: 7.6
Sample A Female 8.7
Sample B Female 7.7
Sample C Male 7.6
Sample D Male 8.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.9
Sample A Male 11.0
Sample B Male 9.9
Sample C Female 12.6
Sample D Female 10.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69353687 Antisense, RP_050412_02_E10, Mouse strain C57BL/6J (56 days, male) 0.1

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