MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:524.3 nTPM
HPA Brain:226.4 nTPM
GTEx:524.3 nTPM
FANTOM5:205.7 Scaled Tags Per Million
Pig:165.5 nTPM
Mouse:153.6 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 226.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 162.8
1870 Female, age 42, unknown 205.5
2828 Female, age 72, unknown 196.8
2666 Male, age 74, left hemisphere 176.9
1827 Male, age 72, unknown 168.3
1833 Male, age 53, unknown 168.2
1830 Male, age 51, unknown 161.7
2411 Female, age 72, unknown 155.7
2586 Male, age 75, left hemisphere 148.7
2219 Male, age 76, both hemispheres 127.0
2019 Male, age 18, unknown 119.2
Dorsal raphe nucleus
nTPM: 211.7
2298 Female, age 72, unknown 243.4
2016 Female, age 72, unknown 228.0
1828 Male, age 53, unknown 212.8
2047 Male, age 72, unknown 205.6
2750 Male, age 76, both hemispheres 168.5
Inferior colliculus
nTPM: 164.1
2097 Female, age 72, unknown 177.0
2849 Male, age 72, unknown 163.9
1890 Male, age 53, unknown 159.1
1848 Female, age 42, unknown 156.3
Median raphe nucleus
nTPM: 174.1
2220 Male, age 76, midline 174.1
Periaquaductal grey, anterior
nTPM: 176.6
1947 Male, age 18, unknown 207.4
1795 Male, age 51, unknown 175.0
2502 Female, age 75, unknown 147.3
Periaquaductal grey, dorsal
nTPM: 174.4
2850 Male, age 76, both hemispheres 221.5
1840 Male, age 53, unknown 183.1
1831 Male, age 72, unknown 163.8
2464 Female, age 72, unknown 129.3
Periaquaductal grey, lateral
nTPM: 176.5
2140 Male, age 76, both hemispheres 184.7
2053 Male, age 18, unknown 177.0
2272 Male, age 74, both hemispheres 168.0
Pretectal area
nTPM: 161.8
2273 Male, age 74, both hemispheres 218.2
2825 Male, age 18, unknown 213.1
2224 Female, age 72, unknown 197.6
2667 Female, age 75, unknown 188.9
2316 Male, age 76, right hemisphere 155.5
1817 Female, age 42, unknown 153.4
1815 Male, age 53, unknown 151.3
2407 Male, age 75, both hemispheres 143.7
1944 Female, age 72, unknown 129.2
2007 Male, age 72, unknown 115.8
1816 Male, age 51, unknown 113.5
Red nucleus
nTPM: 183.8
1821 Female, age 72, unknown 247.1
1865 Male, age 51, unknown 208.9
1954 Female, age 42, unknown 206.2
1904 Male, age 53, unknown 199.1
2725 Female, age 75, unknown 199.1
2823 Male, age 76, right hemisphere 196.9
2769 Male, age 72, unknown 189.1
2503 Female, age 72, unknown 188.4
2227 Male, age 72, unknown 181.8
2584 Male, age 75, left hemisphere 137.8
2588 Male, age 74, left hemisphere 128.0
2785 Male, age 18, unknown 123.0
Substantia nigra
nTPM: 226.4
2699 Male, age 18, unknown 332.2
1916 Female, age 42, unknown 326.8
1851 Male, age 51, unknown 274.8
2241 Male, age 72, unknown 245.4
2409 Female, age 72, unknown 203.3
1889 Female, age 72, unknown 188.6
2665 Male, age 74, both hemispheres 183.3
2590 Female, age 75, unknown 180.9
1941 Male, age 53, unknown 173.9
2583 Male, age 75, right hemisphere 155.2
Superior colliculus
nTPM: 161.7
2587 Male, age 74, left hemisphere 198.9
1995 Male, age 72, unknown 187.5
1913 Female, age 42, unknown 176.1
2668 Female, age 75, unknown 174.1
1796 Male, age 53, unknown 171.0
1839 Male, age 51, unknown 159.4
1895 Male, age 76, right hemisphere 145.9
2664 Male, age 75, both hemispheres 139.6
2087 Female, age 72, unknown 134.9
2261 Male, age 18, unknown 129.5
Ventral tegmental area
nTPM: 200.8
1915 Female, age 42, unknown 268.2
2021 Male, age 53, unknown 201.0
1942 Male, age 51, unknown 189.3
2218 Male, age 76, both hemispheres 187.7
2223 Female, age 72, unknown 186.1
2410 Female, age 72, unknown 172.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 524.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 524.3
Samples: 139

Max nTPM: 1252.9
Min nTPM: 183.2
Std nTPM: 157.8
Median nTPM: 498.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1252.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1187.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 995.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 962.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 880.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 855.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 807.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 802.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 794.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 790.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 748.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 205.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 205.7
FF:10158-103A5 76 years, female 205.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 165.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 160.0
Samples: 4

Max nTPM: 190.0
Min nTPM: 137.4
Sample A Female 190.0
Sample B Female 165.9
Sample C Male 137.4
Sample D Male 146.6
Midbrain
nTPM: 141.3
Samples: 4

Max nTPM: 220.5
Min nTPM: 96.2
Sample A Female 220.5
Sample B Female 150.5
Sample C Male 97.9
Sample D Male 96.2
Periaqueductal gray
nTPM: 124.9
Samples: 3

Max nTPM: 133.5
Min nTPM: 110.7
Sample B Female 133.5
Sample C Male 130.6
Sample D Male 110.7
Superior colliculi
nTPM: 165.5
Samples: 4

Max nTPM: 217.6
Min nTPM: 122.3
Sample A Female 196.4
Sample B Female 217.6
Sample C Male 125.8
Sample D Male 122.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 153.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 153.6
Samples: 4

Max nTPM: 167.8
Min nTPM: 138.5
Sample A Male 167.8
Sample B Male 150.8
Sample C Female 138.5
Sample D Female 157.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69540611 Antisense, RP_050426_02_B02, Mouse strain C57BL/6J (56 days, male) 2.8
73992715 Antisense, RP_051214_01_E07, Mouse strain C57BL/6J (56 days, male) 1.6

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