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CAPRIN1
HPA
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Blood group antigen proteins
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                                          • SUMMARY

                                          • TISSUE

                                          • BRAIN

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                                          • CELL LINE

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                                          • CAPRIN1
                                          TISSUE PRIMARY DATA THYMUS Show tissue menu
                                          ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
                                          DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
                                          NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
                                          SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
                                          ANTIBODIES
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                                          VALIDATION
                                          Dictionary
                                          Tissue proteome
                                          Lymphoid tissue
                                          Tissue methods
                                          THYMUS - Expression summary
                                          Protein expressioni

                                          On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                          No data
                                          RNA expressioni

                                          A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

                                          Scroll down to view mRNA expression data in more detail.

                                          Consensus:72.4 nTPM
                                          HPA:72.4 nTPM
                                          FANTOM5:416.8 Scaled Tags Per Million
                                          THYMUS - SINGLE CELL RNA EXPRESSION
                                          Explore single cell type data
                                          Mesothelial cellsMedullary thymic epithelial cellsVascular endothelial cellsLymphatic endothelial cellsPericytesVascular smooth muscle cellsFibroblastsThymic myoid cellsNeutrophil progenitorsNeutrophilsMonocytesMacrophagesT-cellsThymocytesInnate lymphoid cellsB-cellsPlasma cellsNK-cells050100150200nCPM

                                          THYMUS - HPA RNA-seqi

                                          The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

                                          Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

                                          Average nTPMi

                                          Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

                                          72.4
                                          N/A
                                          Female, age 0.1
                                          Thymus sample 1599
                                          nTPM: 79
                                          N/A
                                          Male, age 0.1
                                          Thymus sample 1602
                                          nTPM: 75.5
                                          N/A
                                          Male, age 0.1
                                          Thymus sample 1603
                                          nTPM: 62.6

                                          THYMUS - FANTOM5 CAGEi

                                          RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                          Max subtype Scaled Tags Per Millioni

                                          Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

                                          416.8
                                          FANTOM5 sample id Sample description Scaled Tags Per Million
                                          Thymus
                                          Scaled Tags Per Million: 416.8
                                          FF:10027-101D9 0.5,0.5,0.83 years old infant, male 416.8

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