HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:25.0 nTPM
HPA Brain:107.7 nTPM
GTEx:25.0 nTPM
FANTOM5:213.3 Scaled Tags Per Million
Pig:148.0 nTPM
Mouse:149.1 nTPM
Allen mouse:3.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells020406080100nCPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018126Antibody HPA063617
Glial cells HighHigh
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 107.7
Sample id Sample description nTPM
Hippocampus
nTPM: 104.9
1898 Male, age 80, left hemisphere 118.3
2621 Female, age 67, right hemisphere 108.6
1855 Male, age 76, left hemisphere 103.7
2148 Female, age 91, left hemisphere 102.2
2529 Female, age 94, left hemisphere 98.7
1911 Female, age 85, right hemisphere 97.8
Dentate gyrus
nTPM: 97.6
1927 Female, age 91, both hemispheres 111.0
2010 Male, age 76, both hemispheres 105.6
2246 Female, age 85, both hemispheres 100.1
2528 Male, age 74, both hemispheres 95.3
2530 Female, age 94, left hemisphere 89.9
2531 Female, age 67, both hemispheres 83.6
Entorhinal gyrus
nTPM: 91.7
1938 Female, age 85, left hemisphere 101.7
2764 Male, age 80, right hemisphere 96.4
2117 Female, age 91, right hemisphere 95.6
1787 Male, age 76, left hemisphere 93.5
2686 Male, age 75, right hemisphere 81.9
2613 Female, age 94, left hemisphere 81.1
Hippocampus, CA1
nTPM: 107.7
2749 Male, age 80, left hemisphere 144.6
1873 Female, age 85, both hemispheres 107.6
2527 Male, age 74, both hemispheres 99.9
2045 Male, age 76, both hemispheres 98.9
2082 Female, age 91, right hemisphere 87.5
Hippocampus, CA2
nTPM: 100.8
1892 Male, age 76, both hemispheres 117.2
1963 Male, age 80, left hemisphere 112.7
2249 Male, age 74, both hemispheres 110.0
1940 Female, age 85, left hemisphere 90.8
2113 Female, age 91, right hemisphere 88.7
2437 Female, age 94, left hemisphere 85.0
Hippocampus, CA3
nTPM: 99.4
2137 Male, age 80, left hemisphere 126.3
2436 Male, age 74, both hemispheres 105.2
1867 Male, age 76, both hemispheres 104.7
2620 Female, age 94, left hemisphere 97.7
1891 Female, age 85, both hemispheres 90.5
2861 Female, age 67, both hemispheres 72.2
Parahippocampal cortex
nTPM: 94.1
1850 Male, age 80, both hemispheres 105.4
1933 Female, age 85, both hemispheres 101.7
2532 Female, age 72, left hemisphere 99.0
2245 Female, age 91, both hemispheres 98.5
2250 Female, age 67, right hemisphere 97.0
1990 Female, age 91, right hemisphere 96.6
2018 Male, age 76, both hemispheres 92.5
2692 Male, age 74, both hemispheres 86.4
2693 Female, age 94, both hemispheres 83.4
2622 Female, age 67, right hemisphere 80.7
Perirhinal gyrus
nTPM: 102.7
1847 Female, age 91, left hemisphere 116.9
1794 Male, age 80, right hemisphere 105.2
1841 Female, age 85, right hemisphere 104.8
2521 Female, age 94, right hemisphere 96.9
2848 Male, age 76, right hemisphere 89.9
Subiculum
nTPM: 94.9
2619 Male, age 74, both hemispheres 100.6
1901 Male, age 80, both hemispheres 97.8
1977 Female, age 85, both hemispheres 96.9
2042 Male, age 76, both hemispheres 96.9
2729 Female, age 91, right hemisphere 88.6
2438 Female, age 94, left hemisphere 88.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 25.0
GTEx sample id Sample description nTPM
21.324.528.311.537.70510152025303540
Brain - Hippocampus
Average nTPM: 25.0
Samples: 255

Max nTPM: 42.4
Min nTPM: 9.0
Std nTPM: 5.3
Median nTPM: 24.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 42.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 41.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 37.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 37.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 37.2
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 37.2
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 37.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 36.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 36.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 36.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 36.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 213.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 213.3
FF:10169-103B7 60 years, female 224.3
FF:10153-102I9 76 years, female 202.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 148.0
Pig sample Sample description nTPM
117.1119.7128.9115.8121.7020406080100120140
 		Subiculum
nTPM: 126.4
Samples: 4

Max nTPM: 150.4
Min nTPM: 115.8
Sample A Female 150.4
Sample B Female 121.7
Sample C Male 115.8
Sample D Male 117.6
138.3142.8152.5126.1143.1020406080100120140160180
 		Dorsal hippocampus
nTPM: 148.1
Samples: 4

Max nTPM: 180.6
Min nTPM: 126.1
Sample A Female 180.6
Sample B Female 143.1
Sample C Male 142.4
Sample D Male 126.1
116.3127.3135.7107.9135.90102030405060708090100110120130
 		Entorhinal cortex
nTPM: 124.6
Samples: 4

Max nTPM: 135.9
Min nTPM: 107.9
Sample A Female 135.6
Sample B Female 135.9
Sample C Male 119.1
Sample D Male 107.9
125.5134.3137.5131.7139.40102030405060708090100110120130
 		Ventral hippocampus
nTPM: 128.8
Samples: 4

Max nTPM: 139.4
Min nTPM: 107.0
Sample A Female 139.4
Sample B Female 107.0
Sample C Male 131.7
Sample D Male 136.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 149.1
Mouse sample Sample description nTPM
130.9137.9145.1121.4155.2020406080100120140
 		Entorhinal cortex
nTPM: 138.1
Samples: 4

Max nTPM: 155.2
Min nTPM: 121.4
Sample A Male 121.4
Sample B Male 134.1
Sample C Female 141.7
Sample D Female 155.2
146.0150.9154.0138.9155.6020406080100120140
 		Hippocampal formation
nTPM: 149.1
Samples: 4

Max nTPM: 155.6
Min nTPM: 138.9
Sample A Male 148.3
Sample B Male 153.5
Sample C Female 155.6
Sample D Female 138.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.1
71232750 Antisense, RP_050503_01_B07, Mouse strain C57BL/6J (56 days, male) 3.1

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