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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRAFD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
40.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
33.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRAFD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
46.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
45.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
44.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
43.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
43.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
22.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.0
967
Tumor
1.0
957
Tumor
1.0
211
Tumor
0.9
283
Tumor
0.7
861
Tumor
0.7
921
Tumor
0.7
937
Tumor
0.7
647
Tumor
0.7
113
Tumor
0.6
313
Tumor
0.6
917
Tumor
0.6
1013
Tumor
0.6
851
Tumor
0.5
473
Tumor
0.5
147
Tumor
0.5
663
Tumor
0.5
434
Normal
0.5
925
Tumor
0.5
463
Tumor
0.5
351
Tumor
0.4
367
Tumor
0.4
161
Tumor
0.4
257
Tumor
0.4
391
Tumor
0.4
865
Tumor
0.4
617
Tumor
0.4
411
Tumor
0.4
213
Tumor
0.4
823
Tumor
0.4
966
Normal
0.4
387
Tumor
0.4
745
Tumor
0.4
262
Normal
0.4
965
Tumor
0.4
983
Tumor
0.4
217
Tumor
0.4
915
Tumor
0.4
913
Tumor
0.3
721
Tumor
0.3
911
Tumor
0.3
383
Tumor
0.3
331
Tumor
0.3
923
Tumor
0.3
451
Tumor
0.3
533
Tumor
0.3
355
Tumor
0.3
662
Normal
0.3
141
Tumor
0.3
388
Normal
0.3
975
Tumor
0.3
573
Tumor
0.3
857
Tumor
0.3
465
Tumor
0.3
375
Tumor
0.2
951
Tumor
0.2
365
Tumor
0.2
953
Tumor
0.2
666
Normal
0.2
648
Normal
0.2
285
Tumor
0.2
977
Tumor
0.2
924
Normal
0.2
858
Normal
0.2
916
Normal
0.2
385
Tumor
0.2
123
Tumor
0.2
393
Tumor
0.2
817
Tumor
0.2
737
Tumor
0.2
452
Normal
0.2
136
Normal
0.2
137
Tumor
0.2
952
Normal
0.2
955
Tumor
0.2
427
Tumor
0.2
192
Normal
0.2
277
Tumor
0.2
918
Normal
0.2
664
Normal
0.2
261
Tumor
0.2
471
Tumor
0.2
311
Tumor
0.2
358
Normal
0.2
492
Normal
0.2
695
Tumor
0.2
343
Tumor
0.2
981
Tumor
0.2
195
Tumor
0.2
145
Tumor
0.2
394
Normal
0.2
188
Normal
0.2
224
Normal
0.2
363
Tumor
0.2
943
Tumor
0.2
1043
Tumor
0.1
386
Normal
0.1
1031
Tumor
0.1
497
Tumor
0.1
535
Tumor
0.1
218
Normal
0.1
816
Normal
0.1
727
Tumor
0.1
132
Normal
0.1
131
Tumor
0.1
744
Normal
0.1
574
Normal
0.1
267
Tumor
0.1
956
Normal
0.1
878
Normal
0.1
212
Normal
0.1
686
Normal
0.1
142
Normal
0.1
196
Normal
0.1
963
Tumor
0.1
716
Normal
0.1
642
Normal
0.1
671
Tumor
0.1
443
Tumor
0.1
125
Tumor
0.1
1015
Tumor
0.1
396
Normal
0.1
468
Normal
0.1
455
Tumor
0.1
286
Normal
0.1
877
Tumor
0.1
554
Normal
0.1
171
Tumor
0.1
228
Normal
0.1
464
Normal
0.1
518
Normal
0.1
444
Normal
0.1
568
Normal
0.1
341
Tumor
0.1
571
Tumor
0.1
815
Tumor
0.1
446
Normal
0.1
392
Normal
0.1
867
Tumor
0.1
1028
Normal
0.1
312
Normal
0.0
487
Tumor
0.0
627
Tumor
0.0
1026
Normal
0.0
696
Normal
0.0
982
Normal
0.0
618
Normal
0.0
635
Tumor
0.0
1027
Tumor
0.0
746
Normal
0.0
366
Normal
0.0
466
Normal
0.0
435
Tumor
0.0
162
Normal
0.0
862
Normal
0.0
413
Tumor
0.0
172
Normal
0.0
436
Normal
0.0
415
Tumor
0.0
368
Normal
0.0
567
Tumor
0.0
146
Normal
0.0
976
Normal
0.0
883
Tumor
0.0
536
Normal
0.0
777
Tumor
0.0
1025
Tumor
0.0
432
Normal
0.0
545
Tumor
0.0
785
Tumor
0.0
517
Tumor
0.0
557
Tumor
0.0
467
Tumor
0.0
538
Normal
0.0
284
Normal
0.0
268
Normal
0.0
278
Normal
0.0
428
Normal
0.0
755
Tumor
0.0
456
Normal
0.0
214
Normal
0.0
298
Normal
0.0
232
Normal
0.0
922
Normal
0.0
641
Tumor
0.0
424
Normal
0.0
553
Tumor
0.0
138
Normal
0.0
852
Normal
0.0
672
Normal
0.0
126
Normal
0.0
222
Normal
0.0
866
Normal
0.0
882
Normal
0.0
537
Tumor
0.0
258
Normal
0.0
357
Tumor
0.0
738
Normal
0.0
135
Tumor
0.0
493
Tumor
-0.1
112
Tumor
-0.1
111
Normal
-0.1
628
Normal
-0.1
352
Normal
-0.1
714
Normal
-0.1
185
Tumor
-0.1
558
Normal
-0.1
715
Tumor
-0.1
148
Normal
-0.1
824
Normal
-0.1
447
Tumor
-0.1
297
Tumor
-0.1
356
Normal
-0.1
445
Tumor
-0.1
472
Normal
-0.1
741
Tumor
-0.1
665
Tumor
-0.1
186
Normal
-0.1
124
Normal
-0.1
516
Normal
-0.1
477
Tumor
-0.1
944
Normal
-0.1
433
Tumor
-0.1
743
Tumor
-0.1
461
Tumor
-0.1
515
Tumor
-0.1
526
Normal
-0.1
968
Normal
-0.1
926
Normal
-0.1
431
Tumor
-0.1
354
Normal
-0.1
328
Normal
-0.1
353
Tumor
-0.1
874
Normal
-0.1
1041
Tumor
-0.1
494
Normal
-0.1
412
Normal
-0.1
271
Tumor
-0.1
474
Normal
-0.1
864
Normal
-0.1
416
Normal
-0.1
361
Tumor
-0.1
362
Normal
-0.1
376
Normal
-0.1
327
Tumor
-0.1
114
Normal
-0.1
525
Tumor
-0.1
1045
Tumor
-0.1
572
Normal
-0.1
272
Normal
-0.1
914
Normal
-0.1
426
Normal
-0.1
223
Tumor
-0.2
881
Tumor
-0.2
818
Normal
-0.2
1022
Normal
-0.2
534
Normal
-0.2
524
Normal
-0.2
491
Tumor
-0.2
513
Tumor
-0.2
873
Tumor
-0.2
462
Normal
-0.2
1021
Tumor
-0.2
938
Normal
-0.2
344
Normal
-0.2
742
Normal
-0.2
814
Normal
-0.2
964
Normal
-0.2
1032
Normal
-0.2
384
Normal
-0.2
563
Tumor
-0.2
1016
Normal
-0.2
724
Normal
-0.2
342
Normal
-0.2
395
Tumor
-0.2
1042
Normal
-0.2
636
Normal
-0.2
332
Normal
-0.2
884
Normal
-0.2
728
Normal
-0.2
912
Normal
-0.2
697
Tumor
-0.2
483
Tumor
-0.2
523
Tumor
-0.2
498
Normal
-0.2
414
Normal
-0.2
698
Normal
-0.2
484
Normal
-0.2
448
Normal
-0.2
191
Tumor
-0.2
958
Normal
-0.2
546
Normal
-0.2
221
Tumor
-0.3
187
Tumor
-0.3
488
Normal
-0.3
425
Tumor
-0.3
127
Tumor
-0.3
528
Normal
-0.3
423
Tumor
-0.3
868
Normal
-0.3
422
Normal
-0.3
1044
Normal
-0.3
421
Tumor
-0.3
478
Normal
-0.3
713
Tumor
-0.3
863
Tumor
-0.3
231
Tumor
-0.3
564
Normal
-0.3
984
Normal
-0.3
722
Normal
-0.3
778
Normal
-0.3
1014
Normal
-0.3
364
Normal
-0.3
813
Tumor
-0.3
978
Normal
-0.3
616
Normal
-0.4
954
Normal
-0.4
128
Normal
-0.4
615
Tumor
-0.4
527
Tumor
-0.4
227
Tumor
-0.4
482
Normal
-0.4
756
Normal
-0.4
723
Tumor
-0.5
314
Normal
-0.5
481
Tumor
-0.5
514
Normal
-0.5
1046
Normal
-0.5
786
Normal
-0.6
685
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
