MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.7 nTPM
HPA Brain:64.9 nTPM
GTEx:44.7 nTPM
FANTOM5:23.6 Scaled Tags Per Million
Pig:144.5 nTPM
Mouse:191.9 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.2
2019 Male, age 18, unknown 62.4
2411 Female, age 72, unknown 59.2
1827 Male, age 72, unknown 57.5
2219 Male, age 76, both hemispheres 57.3
2586 Male, age 75, left hemisphere 55.8
1870 Female, age 42, unknown 52.3
1833 Male, age 53, unknown 52.0
2666 Male, age 74, left hemisphere 50.6
1830 Male, age 51, unknown 49.2
2828 Female, age 72, unknown 45.7
Dorsal raphe nucleus
nTPM: 55.3
1828 Male, age 53, unknown 61.8
2298 Female, age 72, unknown 60.0
2047 Male, age 72, unknown 54.9
2750 Male, age 76, both hemispheres 51.2
2016 Female, age 72, unknown 48.7
Inferior colliculus
nTPM: 55.3
2097 Female, age 72, unknown 62.7
1848 Female, age 42, unknown 57.3
1890 Male, age 53, unknown 54.9
2849 Male, age 72, unknown 46.5
Median raphe nucleus
nTPM: 57.2
2220 Male, age 76, midline 57.2
Periaquaductal grey, anterior
nTPM: 54.5
1947 Male, age 18, unknown 57.6
2502 Female, age 75, unknown 55.6
1795 Male, age 51, unknown 50.3
Periaquaductal grey, dorsal
nTPM: 49.4
1840 Male, age 53, unknown 53.1
2464 Female, age 72, unknown 50.5
1831 Male, age 72, unknown 47.3
2850 Male, age 76, both hemispheres 46.5
Periaquaductal grey, lateral
nTPM: 48.6
2272 Male, age 74, both hemispheres 54.9
2053 Male, age 18, unknown 49.3
2140 Male, age 76, both hemispheres 41.7
Pretectal area
nTPM: 56.9
1816 Male, age 51, unknown 72.0
1944 Female, age 72, unknown 66.6
1817 Female, age 42, unknown 62.6
2007 Male, age 72, unknown 60.4
2224 Female, age 72, unknown 57.8
2273 Male, age 74, both hemispheres 57.7
1815 Male, age 53, unknown 56.8
2667 Female, age 75, unknown 56.5
2825 Male, age 18, unknown 48.3
2407 Male, age 75, both hemispheres 46.8
2316 Male, age 76, right hemisphere 40.7
Red nucleus
nTPM: 51.5
1821 Female, age 72, unknown 64.6
2588 Male, age 74, left hemisphere 53.9
2725 Female, age 75, unknown 53.4
1954 Female, age 42, unknown 52.5
1865 Male, age 51, unknown 51.5
2785 Male, age 18, unknown 51.1
2503 Female, age 72, unknown 51.0
2584 Male, age 75, left hemisphere 48.8
1904 Male, age 53, unknown 48.5
2769 Male, age 72, unknown 48.0
2227 Male, age 72, unknown 47.8
2823 Male, age 76, right hemisphere 46.4
Substantia nigra
nTPM: 64.9
2241 Male, age 72, unknown 92.9
1916 Female, age 42, unknown 74.8
1889 Female, age 72, unknown 67.0
2409 Female, age 72, unknown 66.8
1941 Male, age 53, unknown 66.5
1851 Male, age 51, unknown 65.7
2590 Female, age 75, unknown 56.4
2699 Male, age 18, unknown 54.1
2665 Male, age 74, both hemispheres 52.8
2583 Male, age 75, right hemisphere 52.2
Superior colliculus
nTPM: 53.9
2087 Female, age 72, unknown 63.0
2261 Male, age 18, unknown 59.4
2668 Female, age 75, unknown 57.0
2664 Male, age 75, both hemispheres 54.5
1895 Male, age 76, right hemisphere 54.1
2587 Male, age 74, left hemisphere 53.1
1796 Male, age 53, unknown 52.7
1839 Male, age 51, unknown 51.7
1913 Female, age 42, unknown 47.6
1995 Male, age 72, unknown 45.6
Ventral tegmental area
nTPM: 56.3
2410 Female, age 72, unknown 62.2
1915 Female, age 42, unknown 61.0
2218 Male, age 76, both hemispheres 60.0
2223 Female, age 72, unknown 52.9
1942 Male, age 51, unknown 52.2
2021 Male, age 53, unknown 49.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.7
Samples: 139

Max nTPM: 86.8
Min nTPM: 22.9
Std nTPM: 11.1
Median nTPM: 43.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 86.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 83.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 76.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 76.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 72.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 70.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 64.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 63.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 62.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 62.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 23.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.6
FF:10158-103A5 76 years, female 23.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 144.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 130.9
Samples: 4

Max nTPM: 170.7
Min nTPM: 93.6
Sample A Female 170.7
Sample B Female 111.4
Sample C Male 147.9
Sample D Male 93.6
Midbrain
nTPM: 134.1
Samples: 4

Max nTPM: 137.5
Min nTPM: 125.8
Sample A Female 125.8
Sample B Female 136.2
Sample C Male 137.5
Sample D Male 136.7
Periaqueductal gray
nTPM: 114.8
Samples: 3

Max nTPM: 133.4
Min nTPM: 94.4
Sample B Female 116.6
Sample C Male 133.4
Sample D Male 94.4
Superior colliculi
nTPM: 144.5
Samples: 4

Max nTPM: 180.5
Min nTPM: 124.2
Sample A Female 180.5
Sample B Female 124.8
Sample C Male 148.5
Sample D Male 124.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 191.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 192.0
Samples: 4

Max nTPM: 195.9
Min nTPM: 184.5
Sample A Male 184.5
Sample B Male 195.9
Sample C Female 193.0
Sample D Female 194.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
67978773 Antisense, RP_040923_01_H03, Mouse strain C57BL/6J (56 days, male) 4.2

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