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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
45.1
nTPM
FANTOM5:
65.3
Scaled Tags Per Million
Pig:
39.9
nTPM
Allen mouse:
0.9
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 34.6
2188
Female, age 91, both hemispheres
38.2
2090
Male, age 80, both hemispheres
36.7
2301
Female, age 85, both hemispheres
33.6
1984
Male, age 76, both hemispheres
29.7
Dorsal cochlear nucleus nTPM: 36.2
2187
Female, age 91, both hemispheres
40.3
2802
Male, age 74, right hemisphere
37.7
2058
Male, age 76, both hemispheres
34.7
2378
Male, age 80, both hemispheres
34.7
2370
Male, age 61, both hemispheres
33.3
Dorsal tegmental nucleus nTPM: 35.0
2326
Male, age 74, both hemispheres
38.4
1936
Male, age 76, left hemisphere
37.6
2358
Male, age 61, both hemispheres
32.1
2083
Male, age 80, both hemispheres
32.0
Dorsolateral tegmental area nTPM: 39.3
2337
Male, age 61, both hemispheres
44.8
2360
Male, age 74, both hemispheres
43.8
2654
Male, age 80, both hemispheres
37.6
2751
Female, age 85, both hemispheres
36.2
2141
Male, age 76, both hemispheres
34.3
Kolliker-Fuse nucleus nTPM: 37.2
2793
Female, age 91, left hemisphere
39.9
2315
Male, age 76, right hemisphere
39.2
2163
Male, age 80, both hemispheres
32.7
Lateral lemniscal nuclei nTPM: 36.4
2453
Male, age 74, right hemisphere
39.5
2036
Male, age 80, both hemispheres
38.9
2169
Male, age 76, both hemispheres
37.3
2320
Female, age 91, left hemisphere
33.3
2746
Female, age 85, left hemisphere
33.0
Lateral parabrachial nucleus nTPM: 37.7
2792
Male, age 76, both hemispheres
45.9
2790
Male, age 61, both hemispheres
36.8
2139
Female, age 85, right hemisphere
34.2
2013
Male, age 80, both hemispheres
33.8
Lateral vestibular nucleus nTPM: 35.4
2184
Male, age 76, both hemispheres
38.7
2311
Male, age 80, both hemispheres
32.0
Locus coeruleus nTPM: 41.6
2014
Male, age 55, unknown
53.2
2788
Male, age 74, unknown
49.2
2720
Male, age 74, both hemispheres
39.4
2123
Female, age 91, both hemispheres
38.4
2162
Male, age 80, both hemispheres
38.3
2317
Female, age 72, unknown
37.5
1980
Male, age 76, both hemispheres
35.0
Medial parabrachial nucleus nTPM: 36.4
2854
Male, age 80, both hemispheres
38.9
2463
Female, age 85, right hemisphere
37.7
2786
Male, age 76, both hemispheres
36.9
2170
Female, age 91, both hemispheres
35.3
2156
Male, age 61, both hemispheres
33.4
Medial periolivary nuclei nTPM: 36.9
2171
Female, age 85, both hemispheres
40.9
2791
Male, age 74, right hemisphere
38.7
2063
Male, age 76, both hemispheres
37.0
2081
Male, age 80, both hemispheres
35.3
2458
Female, age 91, both hemispheres
32.5
Motor facial nucleus nTPM: 35.1
2062
Male, age 76, both hemispheres
39.7
2697
Female, age 85, both hemispheres
38.4
2365
Male, age 74, right hemisphere
35.5
2795
Female, age 91, both hemispheres
34.2
2126
Male, age 61, both hemispheres
31.4
2327
Male, age 80, both hemispheres
31.1
Motor trigeminal nucleus nTPM: 32.9
2309
Male, age 76, both hemispheres
35.2
2560
Male, age 74, both hemispheres
33.9
2079
Male, age 80, both hemispheres
33.1
2321
Female, age 91, both hemispheres
33.0
2335
Male, age 61, both hemispheres
29.5
Nuclei of the trapezoid body nTPM: 37.2
2735
Female, age 85, both hemispheres
46.4
2159
Male, age 61, both hemispheres
37.4
2166
Male, age 80, both hemispheres
36.3
1983
Male, age 76, both hemispheres
33.3
2368
Female, age 91, both hemispheres
32.4
Nucleus raphe magnus nTPM: 35.6
2160
Male, age 61, both hemispheres
41.3
2172
Female, age 85, both hemispheres
37.3
2455
Male, age 74, both hemispheres
34.7
2051
Male, age 76, both hemispheres
34.4
2459
Female, age 91, both hemispheres
33.0
2328
Male, age 80, both hemispheres
32.6
Paramedian reticular nucleus nTPM: 45.1
2052
Male, age 76, both hemispheres
63.3
2057
Male, age 80, both hemispheres
39.7
2050
Female, age 85, both hemispheres
39.4
2313
Male, age 61, both hemispheres
38.1
Pedunculopontine tegmental nucleus nTPM: 41.0
1921
Female, age 85, both hemispheres
42.4
2334
Male, age 80, both hemispheres
41.3
2338
Male, age 61, both hemispheres
39.3
Pontine nuclei nTPM: 37.4
1863
Male, age 55, unknown
43.9
2454
Male, age 74, left hemisphere
38.8
2319
Female, age 91, both hemispheres
38.1
2727
Male, age 61, right hemisphere
37.6
2109
Female, age 72, unknown
35.8
2787
Female, age 85, both hemispheres
35.5
1968
Male, age 76, left hemisphere
34.9
2115
Male, age 80, left hemisphere
34.7
Pontine raphe nucleus nTPM: 39.7
2122
Female, age 85, midline
43.2
2853
Male, age 76, midline
36.3
Posteroventral cochlear nucleus nTPM: 36.3
2070
Male, age 76, both hemispheres
41.8
2341
Male, age 80, both hemispheres
36.4
2752
Female, age 85, both hemispheres
34.8
2371
Male, age 61, both hemispheres
34.3
2135
Female, age 91, both hemispheres
34.0
Principal sensory trigeminal nucleus nTPM: 39.1
2367
Female, age 91, left hemisphere
43.6
2324
Male, age 76, both hemispheres
38.6
2008
Male, age 80, left hemisphere
38.3
2158
Male, age 61, both hemispheres
36.0
Reticular pontine nucleus, caudal nTPM: 34.5
2559
Male, age 74, both hemispheres
40.5
2092
Male, age 76, both hemispheres
36.2
2332
Male, age 80, right hemisphere
31.1
2457
Female, age 91, both hemispheres
30.1
Reticular pontine nucleus, oral nTPM: 40.8
2361
Male, age 74, both hemispheres
50.0
2167
Male, age 76, both hemispheres
42.5
2012
Female, age 85, both hemispheres
40.2
2366
Female, age 91, both hemispheres
36.2
1939
Male, age 80, both hemispheres
35.0
Reticulotegmental nucleus nTPM: 33.7
2322
Female, age 91, both hemispheres
36.6
2325
Male, age 76, both hemispheres
33.6
2452
Male, age 74, both hemispheres
32.4
2333
Male, age 80, both hemispheres
32.2
Spinal trigeminal nucleus, oral nTPM: 33.6
1978
Male, age 76, both hemispheres
36.8
2737
Female, age 85, both hemispheres
34.5
2164
Male, age 80, both hemispheres
29.6
Subcoeruleus area nTPM: 37.4
2451
Male, age 74, both hemispheres
41.3
2369
Female, age 85, left hemisphere
40.7
1958
Male, age 80, both hemispheres
37.3
2323
Female, age 91, left hemisphere
36.3
2089
Male, age 76, left hemisphere
31.5
Superior olive nTPM: 36.7
2364
Male, age 74, right hemisphere
41.7
1875
Female, age 85, both hemispheres
40.3
2020
Male, age 76, both hemispheres
35.3
2561
Female, age 91, both hemispheres
33.5
2329
Male, age 80, right hemisphere
32.6
Ventral periolivary nuclei nTPM: 35.8
2023
Male, age 76, both hemispheres
40.0
2794
Female, age 91, left hemisphere
35.9
2130
Female, age 85, both hemispheres
34.6
2165
Male, age 80, both hemispheres
32.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 34.8
2840
Female, age 85, both hemispheres
37.1
1959
Male, age 76, both hemispheres
36.7
2359
Male, age 61, both hemispheres
36.7
2449
Male, age 74, both hemispheres
34.1
2456
Female, age 91, both hemispheres
32.3
2161
Male, age 80, both hemispheres
31.7
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.9
Pig sample
Sample description
nTPM
Pons nTPM: 39.9
Samples: 4
Max nTPM: 48.0
Min nTPM: 34.6
Sample A
Female
35.6
Sample B
Female
34.6
Sample C
Male
48.0
Sample D
Male
41.3
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
