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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTGFRN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
93.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTGFRN is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
34.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
553
Tumor
2.2
425
Tumor
1.6
221
Tumor
1.2
937
Tumor
1.2
125
Tumor
1.1
777
Tumor
1.0
387
Tumor
1.0
977
Tumor
0.9
737
Tumor
0.9
131
Tumor
0.8
745
Tumor
0.8
921
Tumor
0.8
445
Tumor
0.7
1043
Tumor
0.7
558
Normal
0.7
477
Tumor
0.6
135
Tumor
0.6
147
Tumor
0.6
1021
Tumor
0.6
616
Normal
0.6
568
Normal
0.5
112
Tumor
0.5
944
Normal
0.5
963
Tumor
0.5
344
Normal
0.5
968
Normal
0.4
1022
Normal
0.4
353
Tumor
0.4
984
Normal
0.4
824
Normal
0.4
328
Normal
0.4
327
Tumor
0.4
342
Normal
0.4
636
Normal
0.4
127
Tumor
0.4
191
Tumor
0.4
964
Normal
0.4
554
Normal
0.4
352
Normal
0.4
527
Tumor
0.4
564
Normal
0.4
528
Normal
0.3
218
Normal
0.3
128
Normal
0.3
686
Normal
0.3
546
Normal
0.3
723
Tumor
0.3
696
Normal
0.3
982
Normal
0.3
471
Tumor
0.3
426
Normal
0.3
956
Normal
0.3
534
Normal
0.3
861
Tumor
0.3
298
Normal
0.3
852
Normal
0.3
456
Normal
0.3
738
Normal
0.3
257
Tumor
0.3
1044
Normal
0.3
228
Normal
0.3
448
Normal
0.3
955
Tumor
0.3
778
Normal
0.3
572
Normal
0.3
278
Normal
0.3
431
Tumor
0.3
954
Normal
0.3
526
Normal
0.3
494
Normal
0.3
574
Normal
0.3
728
Normal
0.2
482
Normal
0.2
376
Normal
0.2
443
Tumor
0.2
136
Normal
0.2
642
Normal
0.2
354
Normal
0.2
196
Normal
0.2
195
Tumor
0.2
533
Tumor
0.2
698
Normal
0.2
488
Normal
0.2
214
Normal
0.2
416
Normal
0.2
492
Normal
0.2
396
Normal
0.2
864
Normal
0.2
447
Tumor
0.2
816
Normal
0.2
524
Normal
0.2
863
Tumor
0.2
415
Tumor
0.2
926
Normal
0.2
1014
Normal
0.2
484
Normal
0.2
412
Normal
0.2
924
Normal
0.2
873
Tumor
0.2
514
Normal
0.2
341
Tumor
0.2
952
Normal
0.2
922
Normal
0.2
1042
Normal
0.2
862
Normal
0.2
474
Normal
0.2
721
Tumor
0.2
332
Normal
0.2
742
Normal
0.2
746
Normal
0.2
422
Normal
0.2
1028
Normal
0.2
358
Normal
0.2
114
Normal
0.2
1045
Tumor
0.2
314
Normal
0.2
222
Normal
0.2
716
Normal
0.2
883
Tumor
0.1
744
Normal
0.1
258
Normal
0.1
538
Normal
0.1
172
Normal
0.1
858
Normal
0.1
517
Tumor
0.1
813
Tumor
0.1
975
Tumor
0.1
468
Normal
0.1
911
Tumor
0.1
1016
Normal
0.1
421
Tumor
0.1
111
Normal
0.1
478
Normal
0.1
868
Normal
0.1
915
Tumor
0.1
664
Normal
0.1
755
Tumor
0.1
1041
Tumor
0.1
392
Normal
0.1
361
Tumor
0.1
916
Normal
0.1
938
Normal
0.1
756
Normal
0.1
1032
Normal
0.1
857
Tumor
0.1
232
Normal
0.1
462
Normal
0.1
518
Normal
0.1
313
Tumor
0.1
516
Normal
0.1
882
Normal
0.1
1026
Normal
0.1
312
Normal
0.1
628
Normal
0.1
187
Tumor
0.1
455
Tumor
0.1
563
Tumor
0.1
424
Normal
0.1
428
Normal
0.1
386
Normal
0.1
912
Normal
0.1
918
Normal
0.1
1046
Normal
0.0
452
Normal
0.0
491
Tumor
0.0
472
Normal
0.0
388
Normal
0.0
722
Normal
0.0
874
Normal
0.0
866
Normal
0.0
212
Normal
0.0
741
Tumor
0.0
818
Normal
0.0
414
Normal
0.0
433
Tumor
0.0
142
Normal
0.0
473
Tumor
0.0
714
Normal
0.0
444
Normal
0.0
284
Normal
0.0
567
Tumor
0.0
271
Tumor
0.0
618
Normal
0.0
362
Normal
0.0
186
Normal
0.0
617
Tumor
0.0
355
Tumor
0.0
162
Normal
0.0
113
Tumor
0.0
145
Tumor
0.0
394
Normal
0.0
137
Tumor
0.0
1031
Tumor
0.0
185
Tumor
0.0
356
Normal
0.0
384
Normal
0.0
446
Normal
0.0
536
Normal
0.0
368
Normal
-0.1
976
Normal
-0.1
666
Normal
-0.1
171
Tumor
-0.1
672
Normal
-0.1
366
Normal
-0.1
364
Normal
-0.1
213
Tumor
-0.1
148
Normal
-0.1
727
Tumor
-0.1
466
Normal
-0.1
432
Normal
-0.1
958
Normal
-0.1
814
Normal
-0.1
343
Tumor
-0.1
123
Tumor
-0.1
966
Normal
-0.1
573
Tumor
-0.1
126
Normal
-0.1
715
Tumor
-0.1
138
Normal
-0.1
124
Normal
-0.1
648
Normal
-0.1
272
Normal
-0.1
267
Tumor
-0.1
132
Normal
-0.1
262
Normal
-0.1
662
Normal
-0.1
914
Normal
-0.1
923
Tumor
-0.1
884
Normal
-0.1
231
Tumor
-0.1
434
Normal
-0.1
192
Normal
-0.1
224
Normal
-0.1
978
Normal
-0.1
917
Tumor
-0.1
188
Normal
-0.1
878
Normal
-0.1
823
Tumor
-0.1
436
Normal
-0.2
217
Tumor
-0.2
311
Tumor
-0.2
261
Tumor
-0.2
786
Normal
-0.2
223
Tumor
-0.2
957
Tumor
-0.2
286
Normal
-0.2
1013
Tumor
-0.2
925
Tumor
-0.2
697
Tumor
-0.2
461
Tumor
-0.2
525
Tumor
-0.2
268
Normal
-0.3
285
Tumor
-0.3
498
Normal
-0.3
464
Normal
-0.3
665
Tumor
-0.3
497
Tumor
-0.3
146
Normal
-0.3
817
Tumor
-0.3
724
Normal
-0.3
913
Tumor
-0.3
427
Tumor
-0.3
393
Tumor
-0.3
545
Tumor
-0.3
487
Tumor
-0.3
671
Tumor
-0.4
383
Tumor
-0.4
141
Tumor
-0.4
943
Tumor
-0.4
451
Tumor
-0.4
463
Tumor
-0.4
537
Tumor
-0.4
297
Tumor
-0.4
557
Tumor
-0.4
1025
Tumor
-0.4
647
Tumor
-0.4
395
Tumor
-0.4
283
Tumor
-0.4
467
Tumor
-0.4
357
Tumor
-0.4
161
Tumor
-0.4
571
Tumor
-0.5
627
Tumor
-0.5
881
Tumor
-0.5
1015
Tumor
-0.5
211
Tumor
-0.5
635
Tumor
-0.6
411
Tumor
-0.6
423
Tumor
-0.6
481
Tumor
-0.6
865
Tumor
-0.6
277
Tumor
-0.6
951
Tumor
-0.6
331
Tumor
-0.6
953
Tumor
-0.6
983
Tumor
-0.7
375
Tumor
-0.7
851
Tumor
-0.7
513
Tumor
-0.7
391
Tumor
-0.7
483
Tumor
-0.7
685
Tumor
-0.8
435
Tumor
-0.8
385
Tumor
-0.8
713
Tumor
-0.8
523
Tumor
-0.8
877
Tumor
-0.8
367
Tumor
-0.8
493
Tumor
-0.9
1027
Tumor
-0.9
535
Tumor
-0.9
351
Tumor
-0.9
641
Tumor
-1.0
965
Tumor
-1.0
663
Tumor
-1.0
815
Tumor
-1.1
413
Tumor
-1.1
363
Tumor
-1.1
785
Tumor
-1.1
967
Tumor
-1.2
661
Tumor
-1.2
867
Tumor
-1.2
227
Tumor
-1.3
743
Tumor
-1.3
615
Tumor
-1.4
515
Tumor
-1.4
365
Tumor
-1.5
465
Tumor
-1.5
981
Tumor
-1.5
695
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
