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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GSTM1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
127.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2175.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2056.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1842.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1612.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1435.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1302.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1268.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1211.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1137.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1050.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1025.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
918.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
917.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
908.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
789.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
786.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
779.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
709.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
707.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
643.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
638.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
616.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
590.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
584.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
577.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
572.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
546.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
523.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
519.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
502.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
428.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
425.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
420.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
411.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
408.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
406.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
399.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
395.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
382.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
364.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
354.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
353.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
347.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
331.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
325.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
308.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
303.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
290.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
279.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
267.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
263.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
260.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
255.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
252.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
252.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
247.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
245.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
233.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
233.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
227.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
225.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
225.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
224.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
222.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
207.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
202.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
195.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
187.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
186.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
184.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
176.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
160.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
159.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
157.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
156.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
137.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
134.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
133.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
133.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
132.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
129.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
121.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
119.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
114.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
108.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
106.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
101.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
99.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
89.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
86.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
86.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
83.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
83.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
76.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
72.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
72.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
70.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
70.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
67.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
63.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
63.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
60.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
58.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
55.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
55.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
55.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
55.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
54.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
54.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
51.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
50.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
50.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
49.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
45.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
45.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
45.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
45.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
45.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
44.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
43.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
41.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
38.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
38.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
38.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
36.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
35.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
33.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
31.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
28.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
26.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GSTM1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.6
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
683.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
509.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
505.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
417.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
349.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
297.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
247.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
205.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
201.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
200.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
196.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
145.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
138.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
130.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
129.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
123.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
123.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
122.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
122.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
117.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
115.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
114.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
111.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
103.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
102.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
100.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
99.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
94.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
93.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
88.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
86.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
84.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
83.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
82.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
81.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
78.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
77.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
77.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
76.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
75.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
73.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
72.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
69.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
68.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
67.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
66.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
64.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
48.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
45.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
45.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
44.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
40.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
38.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
35.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
915
Tumor
3.4
741
Tumor
3.4
746
Normal
2.4
394
Normal
2.4
356
Normal
2.2
615
Tumor
2.0
426
Normal
2.0
1022
Normal
2.0
111
Normal
2.0
451
Tumor
1.9
916
Normal
1.9
261
Tumor
1.9
867
Tumor
1.9
858
Normal
1.9
627
Tumor
1.9
462
Normal
1.9
172
Normal
1.8
862
Normal
1.8
861
Tumor
1.7
368
Normal
1.7
664
Normal
1.7
628
Normal
1.7
742
Normal
1.6
777
Tumor
1.6
882
Normal
1.6
432
Normal
1.6
452
Normal
1.5
952
Normal
1.5
212
Normal
1.5
618
Normal
1.5
218
Normal
1.5
546
Normal
1.5
138
Normal
1.4
515
Tumor
1.4
574
Normal
1.4
534
Normal
1.4
723
Tumor
1.4
616
Normal
1.4
396
Normal
1.4
456
Normal
1.4
716
Normal
1.3
365
Tumor
1.3
954
Normal
1.3
366
Normal
1.3
964
Normal
1.3
488
Normal
1.3
466
Normal
1.3
186
Normal
1.2
1046
Normal
1.2
513
Tumor
1.2
518
Normal
1.2
953
Tumor
1.2
1014
Normal
1.2
114
Normal
1.2
416
Normal
1.2
352
Normal
1.2
388
Normal
1.1
362
Normal
1.1
386
Normal
1.1
696
Normal
1.1
446
Normal
1.0
146
Normal
1.0
756
Normal
1.0
514
Normal
1.0
868
Normal
1.0
148
Normal
0.9
171
Tumor
0.9
126
Normal
0.9
262
Normal
0.9
744
Normal
0.9
214
Normal
0.9
516
Normal
0.9
487
Tumor
0.8
494
Normal
0.8
778
Normal
0.7
137
Tumor
0.7
976
Normal
0.7
857
Tumor
0.7
984
Normal
0.7
498
Normal
0.7
554
Normal
0.6
284
Normal
0.6
361
Tumor
0.5
461
Tumor
0.5
434
Normal
0.4
444
Normal
0.4
217
Tumor
0.3
268
Normal
0.3
755
Tumor
0.2
663
Tumor
0.2
465
Tumor
0.2
415
Tumor
0.2
445
Tumor
0.2
1045
Tumor
0.2
267
Tumor
0.2
384
Normal
0.2
224
Normal
0.1
145
Tumor
0.1
393
Tumor
0.1
672
Normal
0.1
478
Normal
0.1
715
Tumor
0.1
125
Tumor
0.0
147
Tumor
-0.1
553
Tumor
-0.1
433
Tumor
-0.2
745
Tumor
-0.3
185
Tumor
-0.4
431
Tumor
-0.4
355
Tumor
-0.4
814
Normal
-0.6
493
Tumor
-0.6
477
Tumor
-0.6
367
Tumor
-0.7
517
Tumor
-0.7
536
Normal
-0.8
813
Tumor
-0.8
387
Tumor
-0.9
383
Tumor
-0.9
642
Normal
-0.9
1013
Tumor
-1.0
283
Tumor
-1.0
443
Tumor
-1.0
425
Tumor
-1.0
617
Tumor
-1.0
738
Normal
-1.1
533
Tumor
-1.1
1021
Tumor
-1.1
392
Normal
-1.1
385
Tumor
-1.1
376
Normal
-1.1
918
Normal
-1.1
636
Normal
-1.1
258
Normal
-1.1
213
Tumor
-1.2
395
Tumor
-1.3
497
Tumor
-1.3
232
Normal
-1.3
526
Normal
-1.3
162
Normal
-1.4
211
Tumor
-1.4
926
Normal
-1.4
468
Normal
-1.4
922
Normal
-1.4
863
Tumor
-1.4
223
Tumor
-1.4
924
Normal
-1.4
391
Tumor
-1.4
695
Tumor
-1.4
728
Normal
-1.4
464
Normal
-1.4
917
Tumor
-1.5
112
Tumor
-1.5
573
Tumor
-1.5
635
Tumor
-1.5
881
Tumor
-1.5
524
Normal
-1.5
724
Normal
-1.5
743
Tumor
-1.6
975
Tumor
-1.6
455
Tumor
-1.6
128
Normal
-1.6
436
Normal
-1.6
737
Tumor
-1.6
272
Normal
-1.6
375
Tumor
-1.6
866
Normal
-1.6
864
Normal
-1.6
192
Normal
-1.7
786
Normal
-1.7
257
Tumor
-1.7
641
Tumor
-1.7
925
Tumor
-1.7
286
Normal
-1.7
412
Normal
-1.7
136
Normal
-1.7
523
Tumor
-1.8
188
Normal
-1.8
231
Tumor
-1.8
328
Normal
-1.8
785
Tumor
-1.8
222
Normal
-1.8
474
Normal
-1.8
525
Tumor
-1.8
196
Normal
-1.8
482
Normal
-1.8
463
Tumor
-1.9
364
Normal
-1.9
951
Tumor
-1.9
132
Normal
-1.9
472
Normal
-1.9
874
Normal
-1.9
921
Tumor
-1.9
666
Normal
-1.9
124
Normal
-1.9
228
Normal
-1.9
873
Tumor
-1.9
923
Tumor
-2.0
467
Tumor
-2.0
944
Normal
-2.0
852
Normal
-2.0
271
Tumor
-2.0
481
Tumor
-2.0
983
Tumor
-2.0
113
Tumor
-2.0
545
Tumor
-2.0
161
Tumor
-2.0
528
Normal
-2.0
727
Tumor
-2.1
535
Tumor
-2.1
187
Tumor
-2.1
484
Normal
-2.1
662
Normal
-2.1
982
Normal
-2.1
435
Tumor
-2.1
142
Normal
-2.1
411
Tumor
-2.2
424
Normal
-2.2
492
Normal
-2.2
714
Normal
-2.2
285
Tumor
-2.3
227
Tumor
-2.3
538
Normal
-2.3
195
Tumor
-2.3
671
Tumor
-2.3
221
Tumor
-2.3
327
Tumor
-2.3
938
Normal
-2.3
722
Normal
-2.3
491
Tumor
-2.3
127
Tumor
-2.3
191
Tumor
-2.3
865
Tumor
-2.3
963
Tumor
-2.3
363
Tumor
-2.3
1016
Normal
-2.3
721
Tumor
-2.4
818
Normal
-2.4
141
Tumor
-2.4
123
Tumor
-2.4
483
Tumor
-2.4
686
Normal
-2.4
135
Tumor
-2.5
956
Normal
-2.5
698
Normal
-2.5
527
Tumor
-2.5
713
Tumor
-2.5
473
Tumor
-2.5
884
Normal
-2.6
824
Normal
-2.6
851
Tumor
-2.6
414
Normal
-2.6
342
Normal
-2.6
344
Normal
-2.6
448
Normal
-2.6
1026
Normal
-2.7
537
Tumor
-2.7
471
Tumor
-2.7
428
Normal
-2.7
816
Normal
-2.7
978
Normal
-2.7
648
Normal
-2.7
958
Normal
-2.7
1044
Normal
-2.7
955
Tumor
-2.7
665
Tumor
-2.8
422
Normal
-2.8
572
Normal
-2.8
131
Tumor
-2.8
823
Tumor
-2.8
351
Tumor
-2.8
358
Normal
-2.8
1042
Normal
-2.8
1032
Normal
-2.9
878
Normal
-2.9
423
Tumor
-2.9
912
Normal
-2.9
427
Tumor
-2.9
354
Normal
-2.9
877
Tumor
-2.9
1043
Tumor
-2.9
937
Tumor
-2.9
981
Tumor
-2.9
421
Tumor
-3.0
914
Normal
-3.0
968
Normal
-3.0
685
Tumor
-3.0
647
Tumor
-3.0
1015
Tumor
-3.0
943
Tumor
-3.1
817
Tumor
-3.1
1025
Tumor
-3.1
447
Tumor
-3.1
353
Tumor
-3.1
413
Tumor
-3.1
966
Normal
-3.2
343
Tumor
-3.2
815
Tumor
-3.2
911
Tumor
-3.2
661
Tumor
-3.2
697
Tumor
-3.2
1027
Tumor
-3.2
568
Normal
-3.3
341
Tumor
-3.3
1028
Normal
-3.3
571
Tumor
-3.3
1031
Tumor
-3.3
883
Tumor
-3.4
564
Normal
-3.4
913
Tumor
-3.4
1041
Tumor
-3.4
977
Tumor
-3.4
357
Tumor
-3.4
563
Tumor
-3.5
967
Tumor
-3.6
558
Normal
-3.6
965
Tumor
-3.7
957
Tumor
-3.7
278
Normal
-3.9
567
Tumor
-4.0
311
Tumor
-4.0
557
Tumor
-4.1
298
Normal
-4.2
312
Normal
-4.2
331
Tumor
-4.3
297
Tumor
-4.4
314
Normal
-4.6
332
Normal
-4.7
277
Tumor
-4.8
313
Tumor
-5.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.