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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF128 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
167.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
162.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
154.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
143.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
137.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
124.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
116.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
115.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
110.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
109.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
106.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
101.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
101.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
96.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
96.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
93.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
91.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
85.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
82.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
80.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
80.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
79.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
79.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
78.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
77.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
74.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
71.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
70.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
69.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
69.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
69.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
67.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
67.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
66.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
66.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
64.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
63.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
63.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
63.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
63.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
63.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
62.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
62.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
62.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
62.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
61.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
60.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
59.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
59.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
59.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
58.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
57.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
57.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
56.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
55.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
55.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
54.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
53.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
52.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
51.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
51.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
51.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
51.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
51.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
51.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
50.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
50.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
50.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
50.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
49.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
48.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
48.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
48.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
48.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
48.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
47.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
47.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
46.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
46.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
46.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
46.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
45.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
45.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
45.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
45.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
45.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
45.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
44.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
44.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
44.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
44.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
44.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
43.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
43.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
43.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
43.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
42.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
42.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
42.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
42.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
41.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
41.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
41.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
41.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
41.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
40.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
40.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
39.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
39.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
38.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
38.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
38.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
38.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
38.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
38.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
38.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
37.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
36.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
36.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
36.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
36.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
36.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
35.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
35.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
35.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
35.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
35.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
35.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
34.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
34.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
34.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
33.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
33.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
31.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
31.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
30.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
29.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
28.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
28.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
28.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
27.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
26.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
25.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
25.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
20.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF128 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.4
Number of samples
231
Samples
Sample
Description
TPM
DO45097
0 years, male, NA, stage:3, alive, 1620 days
160.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
136.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
116.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
113.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
112.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
109.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
97.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
92.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
88.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
87.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
86.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
84.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
83.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
80.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
80.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
79.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
78.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
76.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
73.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
73.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
72.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
71.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
70.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
70.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
70.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
69.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
68.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
67.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
66.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
66.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
65.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
64.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
63.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
63.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
63.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
62.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
62.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
62.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
61.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
61.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
59.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
59.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
58.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
57.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
57.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
55.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
54.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
54.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
54.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
53.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
53.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
52.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
52.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
51.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
50.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
50.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
49.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
49.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
49.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
48.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
48.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
48.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
48.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
47.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
47.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
47.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
46.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
46.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
45.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
45.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
45.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
45.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
45.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
45.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
44.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
44.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
44.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
44.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
44.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
43.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
43.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
43.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
43.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
42.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
42.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
42.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
42.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
42.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
42.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
42.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
41.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
41.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
41.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
41.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
40.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
40.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
40.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
39.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
38.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
38.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
37.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
37.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
37.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
37.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
37.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
36.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
36.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
36.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
35.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
35.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
35.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
35.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
34.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
34.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
34.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
34.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
34.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
33.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
33.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
33.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
32.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
32.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
32.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
31.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
30.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
29.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
28.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
28.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
26.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
26.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
25.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
952
Normal
1.5
627
Tumor
1.4
616
Normal
1.4
944
Normal
1.3
618
Normal
1.3
385
Tumor
1.3
493
Tumor
1.2
954
Normal
1.2
393
Tumor
1.2
456
Normal
1.2
938
Normal
1.1
464
Normal
1.1
617
Tumor
1.1
114
Normal
1.1
452
Normal
1.0
171
Tumor
1.0
466
Normal
1.0
413
Tumor
1.0
883
Tumor
1.0
956
Normal
1.0
955
Tumor
0.9
468
Normal
0.9
343
Tumor
0.9
111
Normal
0.9
615
Tumor
0.9
128
Normal
0.9
481
Tumor
0.9
863
Tumor
0.8
744
Normal
0.8
124
Normal
0.8
777
Tumor
0.7
445
Tumor
0.7
232
Normal
0.7
268
Normal
0.7
913
Tumor
0.6
358
Normal
0.6
126
Normal
0.6
914
Normal
0.6
815
Tumor
0.6
388
Normal
0.6
363
Tumor
0.6
223
Tumor
0.6
258
Normal
0.6
727
Tumor
0.6
636
Normal
0.6
137
Tumor
0.6
697
Tumor
0.5
857
Tumor
0.5
685
Tumor
0.5
724
Normal
0.5
1027
Tumor
0.5
342
Normal
0.5
866
Normal
0.5
515
Tumor
0.5
227
Tumor
0.5
195
Tumor
0.5
394
Normal
0.5
432
Normal
0.5
881
Tumor
0.5
196
Normal
0.5
742
Normal
0.5
436
Normal
0.5
222
Normal
0.5
396
Normal
0.5
471
Tumor
0.5
813
Tumor
0.5
217
Tumor
0.4
162
Normal
0.4
741
Tumor
0.4
354
Normal
0.4
392
Normal
0.4
641
Tumor
0.4
862
Normal
0.4
745
Tumor
0.4
983
Tumor
0.4
721
Tumor
0.4
467
Tumor
0.4
647
Tumor
0.4
573
Tumor
0.4
635
Tumor
0.4
882
Normal
0.4
353
Tumor
0.4
911
Tumor
0.4
516
Normal
0.4
1025
Tumor
0.4
386
Normal
0.4
878
Normal
0.4
671
Tumor
0.4
261
Tumor
0.4
267
Tumor
0.4
262
Normal
0.4
473
Tumor
0.4
148
Normal
0.4
172
Normal
0.4
352
Normal
0.4
738
Normal
0.4
482
Normal
0.3
435
Tumor
0.3
737
Tumor
0.3
462
Normal
0.3
312
Normal
0.3
642
Normal
0.3
864
Normal
0.3
474
Normal
0.3
213
Tumor
0.3
218
Normal
0.3
884
Normal
0.3
912
Normal
0.3
874
Normal
0.3
814
Normal
0.3
713
Tumor
0.3
186
Normal
0.3
525
Tumor
0.3
877
Tumor
0.3
873
Tumor
0.3
518
Normal
0.3
357
Tumor
0.3
665
Tumor
0.3
192
Normal
0.3
786
Normal
0.2
728
Normal
0.2
113
Tumor
0.2
272
Normal
0.2
868
Normal
0.2
221
Tumor
0.2
975
Tumor
0.2
123
Tumor
0.2
422
Normal
0.2
723
Tumor
0.2
1028
Normal
0.2
557
Tumor
0.2
1022
Normal
0.2
127
Tumor
0.2
483
Tumor
0.2
517
Tumor
0.2
472
Normal
0.2
785
Tumor
0.2
478
Normal
0.2
824
Normal
0.2
524
Normal
0.2
1045
Tumor
0.2
147
Tumor
0.2
332
Normal
0.2
526
Normal
0.2
1013
Tumor
0.2
715
Tumor
0.2
278
Normal
0.2
695
Tumor
0.2
351
Tumor
0.2
957
Tumor
0.2
425
Tumor
0.2
146
Normal
0.2
663
Tumor
0.1
514
Normal
0.1
816
Normal
0.1
311
Tumor
0.1
185
Tumor
0.1
414
Normal
0.1
851
Tumor
0.1
977
Tumor
0.1
214
Normal
0.1
477
Tumor
0.1
161
Tumor
0.1
746
Normal
0.1
426
Normal
0.1
664
Normal
0.1
395
Tumor
0.1
698
Normal
0.1
433
Tumor
0.1
387
Tumor
0.1
1026
Normal
0.1
571
Tumor
0.1
187
Tumor
0.1
125
Tumor
0.1
648
Normal
0.1
443
Tumor
0.1
1016
Normal
0.1
461
Tumor
0.1
818
Normal
0.1
132
Normal
0.1
1021
Tumor
0.1
112
Tumor
0.1
188
Normal
0.1
344
Normal
0.1
285
Tumor
0.1
424
Normal
0.1
451
Tumor
0.1
136
Normal
0.0
523
Tumor
0.0
341
Tumor
0.0
982
Normal
0.0
135
Tumor
0.0
513
Tumor
0.0
628
Normal
0.0
271
Tumor
0.0
867
Tumor
0.0
1043
Tumor
0.0
1015
Tumor
0.0
568
Normal
0.0
434
Normal
0.0
755
Tumor
0.0
778
Normal
0.0
142
Normal
0.0
953
Tumor
0.0
567
Tumor
0.0
228
Normal
0.0
423
Tumor
0.0
963
Tumor
0.0
428
Normal
0.0
463
Tumor
0.0
865
Tumor
-0.1
411
Tumor
-0.1
314
Normal
-0.1
138
Normal
-0.1
981
Tumor
-0.1
672
Normal
-0.1
756
Normal
-0.1
968
Normal
-0.1
448
Normal
-0.1
446
Normal
-0.1
852
Normal
-0.1
722
Normal
-0.1
391
Tumor
-0.1
574
Normal
-0.1
572
Normal
-0.1
917
Tumor
-0.1
313
Tumor
-0.1
662
Normal
-0.1
427
Tumor
-0.1
858
Normal
-0.1
743
Tumor
-0.1
257
Tumor
-0.1
528
Normal
-0.1
131
Tumor
-0.1
696
Normal
-0.1
212
Normal
-0.1
1041
Tumor
-0.1
951
Tumor
-0.1
191
Tumor
-0.1
331
Tumor
-0.1
918
Normal
-0.1
141
Tumor
-0.1
415
Tumor
-0.1
563
Tumor
-0.1
412
Normal
-0.2
966
Normal
-0.2
686
Normal
-0.2
564
Normal
-0.2
1046
Normal
-0.2
915
Tumor
-0.2
716
Normal
-0.2
231
Tumor
-0.2
714
Normal
-0.2
328
Normal
-0.2
465
Tumor
-0.2
421
Tumor
-0.2
224
Normal
-0.2
1044
Normal
-0.2
356
Normal
-0.2
666
Normal
-0.2
297
Tumor
-0.2
861
Tumor
-0.2
364
Normal
-0.2
298
Normal
-0.2
416
Normal
-0.2
924
Normal
-0.2
431
Tumor
-0.2
817
Tumor
-0.2
926
Normal
-0.2
527
Tumor
-0.2
1014
Normal
-0.2
943
Tumor
-0.2
922
Normal
-0.2
284
Normal
-0.2
534
Normal
-0.3
823
Tumor
-0.3
1032
Normal
-0.3
455
Tumor
-0.3
967
Tumor
-0.3
546
Normal
-0.3
494
Normal
-0.3
286
Normal
-0.3
447
Tumor
-0.3
921
Tumor
-0.3
976
Normal
-0.3
145
Tumor
-0.3
661
Tumor
-0.3
484
Normal
-0.3
984
Normal
-0.3
277
Tumor
-0.3
558
Normal
-0.4
916
Normal
-0.4
964
Normal
-0.4
545
Tumor
-0.4
1042
Normal
-0.4
965
Tumor
-0.4
923
Tumor
-0.5
978
Normal
-0.5
553
Tumor
-0.5
488
Normal
-0.5
327
Tumor
-0.5
925
Tumor
-0.5
283
Tumor
-0.5
444
Normal
-0.5
497
Tumor
-0.5
538
Normal
-0.5
958
Normal
-0.5
355
Tumor
-0.5
537
Tumor
-0.6
535
Tumor
-0.6
1031
Tumor
-0.6
536
Normal
-0.6
554
Normal
-0.6
533
Tumor
-0.7
492
Normal
-0.8
498
Normal
-0.8
937
Tumor
-1.0
487
Tumor
-1.0
211
Tumor
-1.3
491
Tumor
-1.4
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
