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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
206.2
nTPM
HPA Brain:
290.4
nTPM
GTEx:
206.2
nTPM
FANTOM5:
447.9
Scaled Tags Per Million
Pig:
176.5
nTPM
Mouse:
2.9
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
290.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 195.2
1830
Male, age 51, unknown
277.6
2411
Female, age 72, unknown
257.1
2019
Male, age 18, unknown
251.7
1870
Female, age 42, unknown
239.4
1833
Male, age 53, unknown
233.4
2828
Female, age 72, unknown
184.7
2586
Male, age 75, left hemisphere
143.3
2666
Male, age 74, left hemisphere
135.7
1827
Male, age 72, unknown
116.4
2219
Male, age 76, both hemispheres
113.1
Dorsal raphe nucleus nTPM: 145.2
2750
Male, age 76, both hemispheres
292.9
1828
Male, age 53, unknown
145.5
2016
Female, age 72, unknown
126.4
2047
Male, age 72, unknown
93.7
2298
Female, age 72, unknown
67.4
Inferior colliculus nTPM: 119.2
1890
Male, age 53, unknown
149.6
1848
Female, age 42, unknown
124.9
2849
Male, age 72, unknown
111.6
2097
Female, age 72, unknown
90.7
Median raphe nucleus nTPM: 139.3
2220
Male, age 76, midline
139.3
Periaquaductal grey, anterior nTPM: 77.8
1947
Male, age 18, unknown
95.8
1795
Male, age 51, unknown
73.8
2502
Female, age 75, unknown
63.7
Periaquaductal grey, dorsal nTPM: 72.4
2464
Female, age 72, unknown
125.9
1831
Male, age 72, unknown
87.6
2850
Male, age 76, both hemispheres
38.5
1840
Male, age 53, unknown
37.7
Periaquaductal grey, lateral nTPM: 85.7
2272
Male, age 74, both hemispheres
128.7
2053
Male, age 18, unknown
91.5
2140
Male, age 76, both hemispheres
37.0
Pretectal area nTPM: 101.4
2407
Male, age 75, both hemispheres
159.7
2316
Male, age 76, right hemisphere
152.1
1815
Male, age 53, unknown
123.2
2007
Male, age 72, unknown
117.9
2825
Male, age 18, unknown
112.4
2273
Male, age 74, both hemispheres
109.3
1817
Female, age 42, unknown
105.8
2224
Female, age 72, unknown
72.5
2667
Female, age 75, unknown
59.2
1944
Female, age 72, unknown
58.4
1816
Male, age 51, unknown
45.0
Red nucleus nTPM: 290.4
1821
Female, age 72, unknown
353.0
1865
Male, age 51, unknown
347.9
2769
Male, age 72, unknown
340.0
2227
Male, age 72, unknown
337.0
2823
Male, age 76, right hemisphere
335.4
1904
Male, age 53, unknown
289.3
2785
Male, age 18, unknown
287.3
2503
Female, age 72, unknown
253.5
1954
Female, age 42, unknown
240.7
2584
Male, age 75, left hemisphere
236.4
2725
Female, age 75, unknown
235.8
2588
Male, age 74, left hemisphere
228.7
Substantia nigra nTPM: 131.4
2583
Male, age 75, right hemisphere
187.7
2590
Female, age 75, unknown
183.6
1889
Female, age 72, unknown
159.2
1851
Male, age 51, unknown
150.9
2409
Female, age 72, unknown
143.4
1941
Male, age 53, unknown
115.0
1916
Female, age 42, unknown
106.8
2699
Male, age 18, unknown
106.6
2241
Male, age 72, unknown
95.1
2665
Male, age 74, both hemispheres
65.8
Superior colliculus nTPM: 136.4
2668
Female, age 75, unknown
200.0
1913
Female, age 42, unknown
188.5
1895
Male, age 76, right hemisphere
186.7
2587
Male, age 74, left hemisphere
164.2
1995
Male, age 72, unknown
157.5
1839
Male, age 51, unknown
148.9
1796
Male, age 53, unknown
103.5
2664
Male, age 75, both hemispheres
79.0
2087
Female, age 72, unknown
74.9
2261
Male, age 18, unknown
60.6
Ventral tegmental area nTPM: 191.3
2223
Female, age 72, unknown
399.1
2410
Female, age 72, unknown
185.7
2021
Male, age 53, unknown
160.6
1942
Male, age 51, unknown
145.8
2218
Male, age 76, both hemispheres
144.4
1915
Female, age 42, unknown
112.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
206.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 206.2
Samples: 139
Max nTPM: 968.2
Min nTPM: 40.3
Std nTPM: 141.8
Median nTPM: 156.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
968.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
768.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
653.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
580.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
526.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
523.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
493.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
480.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
453.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
432.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
432.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
396.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
382.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
382.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
375.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
372.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
355.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
348.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
331.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
317.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
310.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
296.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
289.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
289.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
288.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
288.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
284.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
283.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
276.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
275.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
271.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
268.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
264.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
261.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
258.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
253.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
246.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
244.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
242.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
242.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
240.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
240.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
238.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
236.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
221.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
215.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
215.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
214.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
211.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
210.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
210.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
208.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
206.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
205.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
201.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
200.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
195.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
195.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
191.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
188.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
187.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
186.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
184.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
183.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
180.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
172.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
170.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
165.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
162.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
156.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
156.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
156.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
154.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
149.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
149.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
147.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
146.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
146.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
145.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
145.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
145.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
143.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
143.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
141.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
140.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
140.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
138.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
138.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
138.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
137.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
137.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
136.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
134.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
130.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
130.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
129.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
128.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
126.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
125.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
124.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
120.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
120.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
120.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
119.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
118.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
117.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
117.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
116.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
116.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
110.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
108.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
107.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
105.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
104.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
100.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
99.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
98.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
97.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
91.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
90.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
89.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
87.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
82.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
80.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
80.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
74.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
72.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
71.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
65.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
64.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
63.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
63.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
62.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
61.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
58.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
57.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
46.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
43.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
40.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 2.9
Samples: 4
Max nTPM: 3.4
Min nTPM: 1.8
Sample A
Male
3.4
Sample B
Male
3.2
Sample C
Female
1.8
Sample D
Female
3.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.