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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
109.3
nTPM
HPA Brain:
83.7
nTPM
GTEx:
109.3
nTPM
FANTOM5:
85.4
Scaled Tags Per Million
Pig:
54.3
nTPM
Mouse:
1.6
nTPM
Allen mouse:
0.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA045765
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
83.7
Sample id
Sample description
nTPM
Hippocampus nTPM: 54.3
2529
Female, age 94, left hemisphere
65.3
1898
Male, age 80, left hemisphere
61.2
2621
Female, age 67, right hemisphere
61.2
1911
Female, age 85, right hemisphere
54.5
2148
Female, age 91, left hemisphere
45.2
1855
Male, age 76, left hemisphere
38.5
Dentate gyrus nTPM: 66.7
2530
Female, age 94, left hemisphere
153.4
2528
Male, age 74, both hemispheres
68.7
2010
Male, age 76, both hemispheres
59.7
2246
Female, age 85, both hemispheres
44.0
2531
Female, age 67, both hemispheres
39.7
1927
Female, age 91, both hemispheres
34.6
Entorhinal gyrus nTPM: 68.2
2117
Female, age 91, right hemisphere
122.7
2764
Male, age 80, right hemisphere
97.5
1787
Male, age 76, left hemisphere
50.4
1938
Female, age 85, left hemisphere
50.4
2613
Female, age 94, left hemisphere
47.3
2686
Male, age 75, right hemisphere
40.8
Hippocampus, CA1 nTPM: 41.1
2082
Female, age 91, right hemisphere
55.6
2527
Male, age 74, both hemispheres
52.8
2749
Male, age 80, left hemisphere
42.6
1873
Female, age 85, both hemispheres
41.6
2045
Male, age 76, both hemispheres
12.6
Hippocampus, CA2 nTPM: 65.1
1963
Male, age 80, left hemisphere
88.2
2249
Male, age 74, both hemispheres
80.6
2437
Female, age 94, left hemisphere
70.7
2113
Female, age 91, right hemisphere
60.7
1940
Female, age 85, left hemisphere
59.1
1892
Male, age 76, both hemispheres
31.7
Hippocampus, CA3 nTPM: 33.3
1891
Female, age 85, both hemispheres
65.9
1867
Male, age 76, both hemispheres
48.1
2436
Male, age 74, both hemispheres
35.6
2137
Male, age 80, left hemisphere
26.2
2620
Female, age 94, left hemisphere
12.1
2861
Female, age 67, both hemispheres
12.0
Parahippocampal cortex nTPM: 48.4
2692
Male, age 74, both hemispheres
82.0
1990
Female, age 91, right hemisphere
74.8
2532
Female, age 72, left hemisphere
65.6
2245
Female, age 91, both hemispheres
50.7
1850
Male, age 80, both hemispheres
48.8
1933
Female, age 85, both hemispheres
48.7
2018
Male, age 76, both hemispheres
38.6
2250
Female, age 67, right hemisphere
33.3
2693
Female, age 94, both hemispheres
28.3
2622
Female, age 67, right hemisphere
13.2
Perirhinal gyrus nTPM: 31.5
2521
Female, age 94, right hemisphere
46.3
1847
Female, age 91, left hemisphere
32.3
2848
Male, age 76, right hemisphere
29.7
1794
Male, age 80, right hemisphere
28.9
1841
Female, age 85, right hemisphere
20.4
Subiculum nTPM: 83.7
2042
Male, age 76, both hemispheres
118.3
1901
Male, age 80, both hemispheres
116.6
2619
Male, age 74, both hemispheres
77.3
1977
Female, age 85, both hemispheres
76.2
2729
Female, age 91, right hemisphere
57.6
2438
Female, age 94, left hemisphere
56.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
109.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 109.3
Samples: 197
Max nTPM: 489.1
Min nTPM: 7.7
Std nTPM: 84.4
Median nTPM: 83.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
489.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
430.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
417.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
383.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
359.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
349.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
342.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
337.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
293.0
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
280.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
279.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
273.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
272.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
271.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
231.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
228.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
221.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
220.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
218.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
216.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
203.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
201.2
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
201.0
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
198.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
197.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
195.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
189.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
188.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
180.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
179.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
175.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
174.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
173.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
170.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
169.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
168.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
168.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
167.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
163.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
160.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
156.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
155.5
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
151.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
148.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
148.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
146.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
145.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
144.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
142.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
141.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
136.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
135.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
134.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
133.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
132.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
129.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
128.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
127.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
126.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
126.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
125.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
124.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
123.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
122.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
122.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
119.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
117.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
115.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
114.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
113.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
112.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
111.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
111.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
111.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
110.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
109.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
108.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
106.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
106.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
105.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
102.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
101.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
100.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
100.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
98.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
98.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
98.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
98.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
97.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
96.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
93.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
92.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
90.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
89.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
86.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
85.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
84.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
83.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
83.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
82.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
81.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
79.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
78.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
76.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
76.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
76.4
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
75.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
74.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
74.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
73.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
72.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
72.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
71.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
71.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
71.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
70.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
69.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
69.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
68.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
68.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
68.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
67.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
67.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
67.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
67.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
67.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
67.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
66.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
65.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
63.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
63.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
62.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
62.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
62.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
60.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
60.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
58.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
57.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
53.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
53.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
52.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
52.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
51.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
51.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
50.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
50.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
48.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
48.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
47.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
47.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
47.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
46.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
45.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
45.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
45.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
45.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
44.8
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
44.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
44.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
43.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
42.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
42.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
42.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
42.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
41.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
41.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
40.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
40.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
40.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
39.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
38.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
38.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
37.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
36.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
35.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
35.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
35.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
34.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
34.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
33.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
33.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
31.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
30.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
29.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
28.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
27.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
27.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
24.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
23.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
20.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
18.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
18.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
16.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
15.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
13.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
8.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
7.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 0.6
Samples: 4
Max nTPM: 0.9
Min nTPM: 0.4
Sample A
Male
0.9
Sample B
Male
0.5
Sample C
Female
0.7
Sample D
Female
0.4
Hippocampal formation nTPM: 1.6
Samples: 4
Max nTPM: 2.6
Min nTPM: 0.8
Sample A
Male
0.8
Sample B
Male
1.3
Sample C
Female
2.6
Sample D
Female
1.8
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.