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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPRA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
62.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
48.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
41.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
32.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTPRA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.7
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
95.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
455
Tumor
0.6
192
Normal
0.5
483
Tumor
0.5
271
Tumor
0.4
267
Tumor
0.4
538
Normal
0.4
126
Normal
0.4
536
Normal
0.4
478
Normal
0.3
883
Tumor
0.3
671
Tumor
0.3
344
Normal
0.3
545
Tumor
0.3
112
Tumor
0.3
563
Tumor
0.3
977
Tumor
0.3
963
Tumor
0.3
461
Tumor
0.3
1041
Tumor
0.3
431
Tumor
0.3
124
Normal
0.3
492
Normal
0.3
823
Tumor
0.3
777
Tumor
0.3
128
Normal
0.3
881
Tumor
0.3
515
Tumor
0.2
386
Normal
0.2
874
Normal
0.2
863
Tumor
0.2
744
Normal
0.2
261
Tumor
0.2
383
Tumor
0.2
785
Tumor
0.2
816
Normal
0.2
1032
Normal
0.2
491
Tumor
0.2
212
Normal
0.2
554
Normal
0.2
553
Tumor
0.2
913
Tumor
0.2
421
Tumor
0.2
1042
Normal
0.2
523
Tumor
0.2
975
Tumor
0.2
415
Tumor
0.2
185
Tumor
0.2
737
Tumor
0.2
686
Normal
0.2
227
Tumor
0.2
468
Normal
0.2
487
Tumor
0.2
967
Tumor
0.2
434
Normal
0.2
343
Tumor
0.2
984
Normal
0.2
127
Tumor
0.2
778
Normal
0.2
342
Normal
0.2
111
Normal
0.2
1014
Normal
0.2
188
Normal
0.2
448
Normal
0.2
968
Normal
0.2
412
Normal
0.1
424
Normal
0.1
924
Normal
0.1
114
Normal
0.1
867
Tumor
0.1
384
Normal
0.1
224
Normal
0.1
558
Normal
0.1
1022
Normal
0.1
284
Normal
0.1
917
Tumor
0.1
956
Normal
0.1
721
Tumor
0.1
546
Normal
0.1
425
Tumor
0.1
471
Tumor
0.1
146
Normal
0.1
696
Normal
0.1
716
Normal
0.1
572
Normal
0.1
1045
Tumor
0.1
172
Normal
0.1
364
Normal
0.1
878
Normal
0.1
516
Normal
0.1
433
Tumor
0.1
447
Tumor
0.1
952
Normal
0.1
958
Normal
0.1
272
Normal
0.1
714
Normal
0.1
1044
Normal
0.1
494
Normal
0.1
298
Normal
0.1
135
Tumor
0.1
351
Tumor
0.1
535
Tumor
0.1
713
Tumor
0.1
352
Normal
0.1
954
Normal
0.1
1016
Normal
0.1
534
Normal
0.1
533
Tumor
0.1
376
Normal
0.1
392
Normal
0.1
312
Normal
0.1
466
Normal
0.1
498
Normal
0.1
385
Tumor
0.1
484
Normal
0.1
852
Normal
0.1
1026
Normal
0.1
213
Tumor
0.1
866
Normal
0.1
141
Tumor
0.1
493
Tumor
0.1
411
Tumor
0.1
444
Normal
0.1
125
Tumor
0.1
332
Normal
0.1
672
Normal
0.1
277
Tumor
0.1
574
Normal
0.1
615
Tumor
0.1
914
Normal
0.1
138
Normal
0.1
214
Normal
0.1
786
Normal
0.1
1028
Normal
0.1
943
Tumor
0.1
526
Normal
0.1
1031
Tumor
0.1
697
Tumor
0.1
211
Tumor
0.1
663
Tumor
0.1
186
Normal
0.1
162
Normal
0.1
982
Normal
0.1
148
Normal
0.1
857
Tumor
0.1
1043
Tumor
0.1
662
Normal
0.1
222
Normal
0.1
937
Tumor
0.1
368
Normal
0.1
331
Tumor
0.1
728
Normal
0.0
868
Normal
0.0
416
Normal
0.0
278
Normal
0.0
362
Normal
0.0
722
Normal
0.0
882
Normal
0.0
916
Normal
0.0
824
Normal
0.0
642
Normal
0.0
394
Normal
0.0
396
Normal
0.0
426
Normal
0.0
746
Normal
0.0
976
Normal
0.0
964
Normal
0.0
221
Tumor
0.0
938
Normal
0.0
428
Normal
0.0
685
Tumor
0.0
422
Normal
0.0
497
Tumor
0.0
474
Normal
0.0
524
Normal
0.0
462
Normal
0.0
864
Normal
0.0
327
Tumor
0.0
518
Normal
0.0
488
Normal
0.0
564
Normal
0.0
387
Tumor
0.0
171
Tumor
0.0
218
Normal
0.0
472
Normal
0.0
328
Normal
0.0
1015
Tumor
0.0
314
Normal
0.0
297
Tumor
0.0
262
Normal
0.0
268
Normal
0.0
951
Tumor
0.0
356
Normal
0.0
818
Normal
0.0
815
Tumor
0.0
223
Tumor
0.0
814
Normal
0.0
456
Normal
0.0
922
Normal
0.0
528
Normal
0.0
858
Normal
0.0
698
Normal
0.0
473
Tumor
0.0
195
Tumor
0.0
966
Normal
0.0
217
Tumor
0.0
482
Normal
0.0
131
Tumor
0.0
228
Normal
0.0
464
Normal
0.0
123
Tumor
0.0
918
Normal
0.0
695
Tumor
0.0
414
Normal
0.0
196
Normal
0.0
481
Tumor
0.0
463
Tumor
0.0
354
Normal
0.0
361
Tumor
0.0
527
Tumor
0.0
366
Normal
0.0
446
Normal
0.0
978
Normal
0.0
358
Normal
0.0
944
Normal
0.0
311
Tumor
0.0
664
Normal
0.0
738
Normal
0.0
1027
Tumor
0.0
647
Tumor
0.0
285
Tumor
0.0
756
Normal
0.0
618
Normal
-0.1
877
Tumor
-0.1
388
Normal
-0.1
955
Tumor
-0.1
375
Tumor
-0.1
363
Tumor
-0.1
514
Normal
-0.1
147
Tumor
-0.1
636
Normal
-0.1
136
Normal
-0.1
423
Tumor
-0.1
142
Normal
-0.1
742
Normal
-0.1
232
Normal
-0.1
436
Normal
-0.1
427
Tumor
-0.1
413
Tumor
-0.1
862
Normal
-0.1
467
Tumor
-0.1
525
Tumor
-0.1
132
Normal
-0.1
286
Normal
-0.1
741
Tumor
-0.1
817
Tumor
-0.1
258
Normal
-0.1
1046
Normal
-0.1
365
Tumor
-0.1
628
Normal
-0.1
1021
Tumor
-0.1
921
Tumor
-0.1
568
Normal
-0.1
715
Tumor
-0.1
884
Normal
-0.1
861
Tumor
-0.1
353
Tumor
-0.1
912
Normal
-0.1
432
Normal
-0.1
641
Tumor
-0.1
452
Normal
-0.1
648
Normal
-0.1
161
Tumor
-0.1
187
Tumor
-0.1
451
Tumor
-0.2
635
Tumor
-0.2
666
Normal
-0.2
925
Tumor
-0.2
911
Tumor
-0.2
981
Tumor
-0.2
355
Tumor
-0.2
231
Tumor
-0.2
283
Tumor
-0.2
723
Tumor
-0.2
873
Tumor
-0.2
813
Tumor
-0.2
627
Tumor
-0.2
513
Tumor
-0.2
661
Tumor
-0.2
616
Normal
-0.2
257
Tumor
-0.2
113
Tumor
-0.2
517
Tumor
-0.2
926
Normal
-0.2
953
Tumor
-0.2
477
Tumor
-0.2
1013
Tumor
-0.2
727
Tumor
-0.2
724
Normal
-0.2
145
Tumor
-0.2
915
Tumor
-0.3
745
Tumor
-0.3
617
Tumor
-0.3
743
Tumor
-0.3
395
Tumor
-0.3
573
Tumor
-0.3
191
Tumor
-0.3
557
Tumor
-0.3
571
Tumor
-0.3
137
Tumor
-0.3
665
Tumor
-0.3
755
Tumor
-0.3
465
Tumor
-0.3
313
Tumor
-0.3
851
Tumor
-0.3
391
Tumor
-0.3
445
Tumor
-0.3
865
Tumor
-0.4
367
Tumor
-0.4
537
Tumor
-0.4
357
Tumor
-0.4
983
Tumor
-0.4
1025
Tumor
-0.4
435
Tumor
-0.4
393
Tumor
-0.4
923
Tumor
-0.5
341
Tumor
-0.5
567
Tumor
-0.5
443
Tumor
-0.5
965
Tumor
-0.6
957
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
