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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
475.2
nTPM
FANTOM5:
1218.5
Scaled Tags Per Million
Pig:
298.2
nTPM
Allen mouse:
9.9
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
475.2
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 321.6
2301
Female, age 85, both hemispheres
393.7
2188
Female, age 91, both hemispheres
330.4
2090
Male, age 80, both hemispheres
281.5
1984
Male, age 76, both hemispheres
280.8
Dorsal cochlear nucleus nTPM: 325.0
2187
Female, age 91, both hemispheres
347.3
2370
Male, age 61, both hemispheres
334.5
2802
Male, age 74, right hemisphere
333.1
2058
Male, age 76, both hemispheres
327.6
2378
Male, age 80, both hemispheres
282.4
Dorsal tegmental nucleus nTPM: 337.0
2358
Male, age 61, both hemispheres
396.4
2083
Male, age 80, both hemispheres
371.7
1936
Male, age 76, left hemisphere
300.8
2326
Male, age 74, both hemispheres
279.0
Dorsolateral tegmental area nTPM: 307.6
2654
Male, age 80, both hemispheres
363.5
2751
Female, age 85, both hemispheres
323.5
2141
Male, age 76, both hemispheres
305.6
2337
Male, age 61, both hemispheres
294.7
2360
Male, age 74, both hemispheres
250.7
Kolliker-Fuse nucleus nTPM: 419.4
2793
Female, age 91, left hemisphere
457.5
2163
Male, age 80, both hemispheres
425.5
2315
Male, age 76, right hemisphere
375.2
Lateral lemniscal nuclei nTPM: 432.0
2169
Male, age 76, both hemispheres
490.2
2036
Male, age 80, both hemispheres
464.9
2746
Female, age 85, left hemisphere
426.7
2453
Male, age 74, right hemisphere
425.7
2320
Female, age 91, left hemisphere
352.7
Lateral parabrachial nucleus nTPM: 399.3
2139
Female, age 85, right hemisphere
466.7
2790
Male, age 61, both hemispheres
413.7
2792
Male, age 76, both hemispheres
373.5
2013
Male, age 80, both hemispheres
343.3
Lateral vestibular nucleus nTPM: 384.6
2184
Male, age 76, both hemispheres
410.8
2311
Male, age 80, both hemispheres
358.5
Locus coeruleus nTPM: 451.6
2720
Male, age 74, both hemispheres
536.5
2123
Female, age 91, both hemispheres
499.4
2014
Male, age 55, unknown
470.8
2317
Female, age 72, unknown
446.3
1980
Male, age 76, both hemispheres
438.6
2162
Male, age 80, both hemispheres
401.0
2788
Male, age 74, unknown
368.8
Medial parabrachial nucleus nTPM: 372.4
2854
Male, age 80, both hemispheres
441.9
2156
Male, age 61, both hemispheres
405.5
2170
Female, age 91, both hemispheres
386.6
2786
Male, age 76, both hemispheres
346.2
2463
Female, age 85, right hemisphere
282.0
Medial periolivary nuclei nTPM: 406.1
2171
Female, age 85, both hemispheres
529.9
2063
Male, age 76, both hemispheres
466.2
2791
Male, age 74, right hemisphere
390.9
2458
Female, age 91, both hemispheres
331.2
2081
Male, age 80, both hemispheres
312.5
Motor facial nucleus nTPM: 434.4
2697
Female, age 85, both hemispheres
494.8
2062
Male, age 76, both hemispheres
483.2
2795
Female, age 91, both hemispheres
451.4
2327
Male, age 80, both hemispheres
439.1
2365
Male, age 74, right hemisphere
425.0
2126
Male, age 61, both hemispheres
313.0
Motor trigeminal nucleus nTPM: 366.8
2560
Male, age 74, both hemispheres
420.2
2079
Male, age 80, both hemispheres
402.9
2335
Male, age 61, both hemispheres
355.7
2309
Male, age 76, both hemispheres
338.8
2321
Female, age 91, both hemispheres
316.5
Nuclei of the trapezoid body nTPM: 443.1
2159
Male, age 61, both hemispheres
498.8
2735
Female, age 85, both hemispheres
477.2
1983
Male, age 76, both hemispheres
475.3
2368
Female, age 91, both hemispheres
385.3
2166
Male, age 80, both hemispheres
379.0
Nucleus raphe magnus nTPM: 475.2
2160
Male, age 61, both hemispheres
645.5
2172
Female, age 85, both hemispheres
561.3
2455
Male, age 74, both hemispheres
446.7
2051
Male, age 76, both hemispheres
422.6
2328
Male, age 80, both hemispheres
420.4
2459
Female, age 91, both hemispheres
354.6
Paramedian reticular nucleus nTPM: 376.0
2050
Female, age 85, both hemispheres
451.1
2313
Male, age 61, both hemispheres
398.5
2057
Male, age 80, both hemispheres
376.8
2052
Male, age 76, both hemispheres
277.5
Pedunculopontine tegmental nucleus nTPM: 355.5
2334
Male, age 80, both hemispheres
406.8
1921
Female, age 85, both hemispheres
331.8
2338
Male, age 61, both hemispheres
327.9
Pontine nuclei nTPM: 461.7
2787
Female, age 85, both hemispheres
661.8
1863
Male, age 55, unknown
594.9
2727
Male, age 61, right hemisphere
530.3
1968
Male, age 76, left hemisphere
465.5
2109
Female, age 72, unknown
431.9
2454
Male, age 74, left hemisphere
358.2
2115
Male, age 80, left hemisphere
335.4
2319
Female, age 91, both hemispheres
315.8
Pontine raphe nucleus nTPM: 401.1
2122
Female, age 85, midline
432.7
2853
Male, age 76, midline
369.5
Posteroventral cochlear nucleus nTPM: 302.9
2752
Female, age 85, both hemispheres
350.5
2070
Male, age 76, both hemispheres
335.6
2371
Male, age 61, both hemispheres
335.6
2135
Female, age 91, both hemispheres
248.1
2341
Male, age 80, both hemispheres
244.6
Principal sensory trigeminal nucleus nTPM: 425.7
2158
Male, age 61, both hemispheres
537.5
2008
Male, age 80, left hemisphere
404.6
2324
Male, age 76, both hemispheres
403.4
2367
Female, age 91, left hemisphere
357.3
Reticular pontine nucleus, caudal nTPM: 385.1
2332
Male, age 80, right hemisphere
459.9
2092
Male, age 76, both hemispheres
425.5
2457
Female, age 91, both hemispheres
351.9
2559
Male, age 74, both hemispheres
303.1
Reticular pontine nucleus, oral nTPM: 361.7
2012
Female, age 85, both hemispheres
387.2
2366
Female, age 91, both hemispheres
365.9
1939
Male, age 80, both hemispheres
356.9
2361
Male, age 74, both hemispheres
352.6
2167
Male, age 76, both hemispheres
346.1
Reticulotegmental nucleus nTPM: 369.2
2325
Male, age 76, both hemispheres
397.3
2322
Female, age 91, both hemispheres
363.7
2333
Male, age 80, both hemispheres
358.3
2452
Male, age 74, both hemispheres
357.4
Spinal trigeminal nucleus, oral nTPM: 352.2
2164
Male, age 80, both hemispheres
393.4
2737
Female, age 85, both hemispheres
346.2
1978
Male, age 76, both hemispheres
317.0
Subcoeruleus area nTPM: 373.0
1958
Male, age 80, both hemispheres
423.4
2323
Female, age 91, left hemisphere
419.9
2089
Male, age 76, left hemisphere
376.9
2451
Male, age 74, both hemispheres
328.5
2369
Female, age 85, left hemisphere
316.1
Superior olive nTPM: 407.0
1875
Female, age 85, both hemispheres
488.1
2329
Male, age 80, right hemisphere
413.1
2561
Female, age 91, both hemispheres
386.1
2364
Male, age 74, right hemisphere
380.0
2020
Male, age 76, both hemispheres
367.9
Ventral periolivary nuclei nTPM: 429.1
2130
Female, age 85, both hemispheres
492.9
2165
Male, age 80, both hemispheres
483.0
2023
Male, age 76, both hemispheres
374.1
2794
Female, age 91, left hemisphere
366.4
Ventrolateral tegmental area, A5 NE cell group nTPM: 418.0
2840
Female, age 85, both hemispheres
467.5
2359
Male, age 61, both hemispheres
437.2
1959
Male, age 76, both hemispheres
425.1
2449
Male, age 74, both hemispheres
423.7
2161
Male, age 80, both hemispheres
402.9
2456
Female, age 91, both hemispheres
351.6
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
298.2
Pig sample
Sample description
nTPM
Pons nTPM: 298.3
Samples: 4
Max nTPM: 367.1
Min nTPM: 229.4
Sample A
Female
314.1
Sample B
Female
229.4
Sample C
Male
282.5
Sample D
Male
367.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
