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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RHPN2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
72.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
54.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
53.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
35.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RHPN2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.3
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
89.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
88.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
72.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
50.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.7
443
Tumor
1.6
635
Tumor
1.4
487
Tumor
1.3
671
Tumor
0.9
341
Tumor
0.9
537
Tumor
0.8
745
Tumor
0.8
125
Tumor
0.8
573
Tumor
0.8
285
Tumor
0.7
661
Tumor
0.7
353
Tumor
0.7
567
Tumor
0.7
1021
Tumor
0.7
545
Tumor
0.7
385
Tumor
0.7
387
Tumor
0.6
983
Tumor
0.6
497
Tumor
0.6
785
Tumor
0.6
815
Tumor
0.6
131
Tumor
0.5
257
Tumor
0.5
481
Tumor
0.5
231
Tumor
0.5
395
Tumor
0.5
477
Tumor
0.5
112
Tumor
0.5
1013
Tumor
0.4
967
Tumor
0.4
463
Tumor
0.4
517
Tumor
0.4
127
Tumor
0.4
527
Tumor
0.4
1027
Tumor
0.4
227
Tumor
0.4
433
Tumor
0.4
363
Tumor
0.4
391
Tumor
0.4
113
Tumor
0.4
351
Tumor
0.4
123
Tumor
0.4
647
Tumor
0.4
957
Tumor
0.3
425
Tumor
0.3
923
Tumor
0.3
413
Tumor
0.3
445
Tumor
0.3
367
Tumor
0.3
187
Tumor
0.3
817
Tumor
0.3
937
Tumor
0.3
925
Tumor
0.3
313
Tumor
0.3
267
Tumor
0.3
951
Tumor
0.3
271
Tumor
0.3
641
Tumor
0.2
211
Tumor
0.2
421
Tumor
0.2
722
Normal
0.2
975
Tumor
0.2
571
Tumor
0.2
393
Tumor
0.2
361
Tumor
0.2
185
Tumor
0.2
865
Tumor
0.2
331
Tumor
0.2
286
Normal
0.2
465
Tumor
0.2
617
Tumor
0.2
435
Tumor
0.2
431
Tumor
0.2
195
Tumor
0.2
873
Tumor
0.1
851
Tumor
0.1
727
Tumor
0.1
277
Tumor
0.1
436
Normal
0.1
414
Normal
0.1
866
Normal
0.1
616
Normal
0.1
355
Tumor
0.1
314
Normal
0.1
664
Normal
0.1
232
Normal
0.1
913
Tumor
0.1
114
Normal
0.1
446
Normal
0.1
926
Normal
0.1
648
Normal
0.1
186
Normal
0.1
663
Tumor
0.1
297
Tumor
0.1
883
Tumor
0.1
557
Tumor
0.1
136
Normal
0.1
955
Tumor
0.1
697
Tumor
0.1
713
Tumor
0.1
111
Normal
0.1
357
Tumor
0.1
642
Normal
0.1
755
Tumor
0.1
327
Tumor
0.1
422
Normal
0.0
627
Tumor
0.0
918
Normal
0.0
356
Normal
0.0
354
Normal
0.0
171
Tumor
0.0
921
Tumor
0.0
473
Tumor
0.0
432
Normal
0.0
428
Normal
0.0
742
Normal
0.0
128
Normal
0.0
132
Normal
0.0
426
Normal
0.0
471
Tumor
0.0
743
Tumor
0.0
523
Tumor
0.0
1045
Tumor
0.0
813
Tumor
0.0
472
Normal
0.0
258
Normal
0.0
714
Normal
0.0
964
Normal
0.0
696
Normal
0.0
858
Normal
0.0
528
Normal
0.0
526
Normal
0.0
161
Tumor
0.0
482
Normal
0.0
493
Tumor
0.0
147
Tumor
0.0
568
Normal
0.0
221
Tumor
0.0
483
Tumor
0.0
564
Normal
0.0
424
Normal
0.0
455
Tumor
0.0
298
Normal
0.0
744
Normal
0.0
1016
Normal
0.0
196
Normal
0.0
628
Normal
0.0
965
Tumor
0.0
953
Tumor
0.0
976
Normal
0.0
268
Normal
-0.1
862
Normal
-0.1
982
Normal
-0.1
786
Normal
-0.1
364
Normal
-0.1
124
Normal
-0.1
563
Tumor
-0.1
394
Normal
-0.1
343
Tumor
-0.1
1043
Tumor
-0.1
223
Tumor
-0.1
924
Normal
-0.1
662
Normal
-0.1
228
Normal
-0.1
686
Normal
-0.1
636
Normal
-0.1
272
Normal
-0.1
1025
Tumor
-0.1
423
Tumor
-0.1
1026
Normal
-0.1
818
Normal
-0.1
162
Normal
-0.1
882
Normal
-0.1
447
Tumor
-0.1
1015
Tumor
-0.1
737
Tumor
-0.1
148
Normal
-0.1
1046
Normal
-0.1
881
Tumor
-0.1
716
Normal
-0.1
388
Normal
-0.1
518
Normal
-0.1
376
Normal
-0.1
778
Normal
-0.1
574
Normal
-0.1
467
Tumor
-0.1
126
Normal
-0.1
332
Normal
-0.1
746
Normal
-0.1
488
Normal
-0.1
956
Normal
-0.1
444
Normal
-0.1
533
Tumor
-0.1
396
Normal
-0.1
514
Normal
-0.1
1022
Normal
-0.1
141
Tumor
-0.1
191
Tumor
-0.1
824
Normal
-0.1
864
Normal
-0.1
738
Normal
-0.1
1032
Normal
-0.1
172
Normal
-0.1
464
Normal
-0.1
278
Normal
-0.1
665
Tumor
-0.1
728
Normal
-0.1
968
Normal
-0.1
358
Normal
-0.1
368
Normal
-0.2
618
Normal
-0.2
884
Normal
-0.2
222
Normal
-0.2
944
Normal
-0.2
954
Normal
-0.2
816
Normal
-0.2
474
Normal
-0.2
412
Normal
-0.2
416
Normal
-0.2
984
Normal
-0.2
572
Normal
-0.2
721
Tumor
-0.2
498
Normal
-0.2
392
Normal
-0.2
672
Normal
-0.2
188
Normal
-0.2
868
Normal
-0.2
912
Normal
-0.2
352
Normal
-0.2
715
Tumor
-0.2
434
Normal
-0.2
138
Normal
-0.2
1028
Normal
-0.2
756
Normal
-0.2
262
Normal
-0.2
723
Tumor
-0.2
874
Normal
-0.2
365
Tumor
-0.2
386
Normal
-0.2
452
Normal
-0.2
698
Normal
-0.2
328
Normal
-0.2
666
Normal
-0.2
217
Tumor
-0.2
145
Tumor
-0.2
342
Normal
-0.2
938
Normal
-0.2
535
Tumor
-0.2
916
Normal
-0.2
1014
Normal
-0.2
427
Tumor
-0.2
311
Tumor
-0.2
146
Normal
-0.2
546
Normal
-0.2
877
Tumor
-0.2
515
Tumor
-0.2
261
Tumor
-0.2
966
Normal
-0.2
914
Normal
-0.2
135
Tumor
-0.2
284
Normal
-0.2
456
Normal
-0.2
384
Normal
-0.2
212
Normal
-0.3
312
Normal
-0.3
1042
Normal
-0.3
534
Normal
-0.3
943
Tumor
-0.3
411
Tumor
-0.3
218
Normal
-0.3
978
Normal
-0.3
137
Tumor
-0.3
484
Normal
-0.3
466
Normal
-0.3
525
Tumor
-0.3
952
Normal
-0.3
462
Normal
-0.3
468
Normal
-0.3
1044
Normal
-0.3
448
Normal
-0.3
814
Normal
-0.3
852
Normal
-0.3
142
Normal
-0.3
615
Tumor
-0.3
922
Normal
-0.3
494
Normal
-0.3
558
Normal
-0.3
538
Normal
-0.3
362
Normal
-0.3
366
Normal
-0.3
344
Normal
-0.3
224
Normal
-0.3
375
Tumor
-0.3
283
Tumor
-0.3
478
Normal
-0.3
878
Normal
-0.3
867
Tumor
-0.4
958
Normal
-0.4
192
Normal
-0.4
963
Tumor
-0.4
553
Tumor
-0.4
513
Tumor
-0.4
857
Tumor
-0.4
415
Tumor
-0.4
516
Normal
-0.4
981
Tumor
-0.4
524
Normal
-0.4
863
Tumor
-0.4
214
Normal
-0.5
461
Tumor
-0.5
554
Normal
-0.5
685
Tumor
-0.5
451
Tumor
-0.5
917
Tumor
-0.5
977
Tumor
-0.5
1041
Tumor
-0.5
861
Tumor
-0.5
492
Normal
-0.6
823
Tumor
-0.6
1031
Tumor
-0.7
536
Normal
-0.7
911
Tumor
-0.7
741
Tumor
-0.7
213
Tumor
-0.7
383
Tumor
-0.8
915
Tumor
-0.9
491
Tumor
-1.0
724
Normal
-1.0
777
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
