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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNRPA1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
169.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
109.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
102.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
94.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
90.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
88.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
86.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
86.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
84.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
78.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
78.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
72.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
69.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
68.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
67.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
65.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
64.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
64.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
63.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
62.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
60.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
57.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
57.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
56.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
56.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
54.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
54.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
53.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
52.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
51.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
50.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
50.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
50.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
49.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
49.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
46.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
46.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
45.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
44.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
44.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
44.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
43.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
42.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
42.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
42.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
42.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
41.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
39.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
39.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
38.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
38.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
37.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
36.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
36.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
35.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
35.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
35.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
34.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
34.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
34.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
33.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
33.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
32.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
32.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
32.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
31.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
29.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
29.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
29.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
29.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
28.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
27.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
27.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
27.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
25.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
23.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
20.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNRPA1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.2
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
202.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
141.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
93.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
84.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
82.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
77.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
77.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
76.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
76.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
67.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
67.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
64.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
61.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
60.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
58.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
58.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
57.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
56.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
54.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
53.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
52.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
52.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
52.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
52.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
51.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
51.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
49.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
47.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
47.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
45.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
45.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
45.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
44.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
43.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
43.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
42.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
42.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
41.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
41.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
40.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
39.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
39.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
39.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
38.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
38.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
38.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
37.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
37.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
35.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
33.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
33.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
32.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
32.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
31.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
30.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
30.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
30.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
29.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
28.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.0
131
Tumor
0.7
331
Tumor
0.7
351
Tumor
0.6
367
Tumor
0.5
661
Tumor
0.5
983
Tumor
0.5
497
Tumor
0.5
411
Tumor
0.4
425
Tumor
0.4
951
Tumor
0.4
285
Tumor
0.4
413
Tumor
0.4
815
Tumor
0.4
313
Tumor
0.4
737
Tumor
0.4
297
Tumor
0.4
965
Tumor
0.4
537
Tumor
0.4
877
Tumor
0.4
271
Tumor
0.4
443
Tumor
0.4
277
Tumor
0.3
967
Tumor
0.3
977
Tumor
0.3
671
Tumor
0.3
447
Tumor
0.3
727
Tumor
0.3
227
Tumor
0.3
357
Tumor
0.3
881
Tumor
0.3
685
Tumor
0.3
433
Tumor
0.3
1021
Tumor
0.3
527
Tumor
0.3
975
Tumor
0.3
665
Tumor
0.2
571
Tumor
0.2
391
Tumor
0.2
135
Tumor
0.2
383
Tumor
0.2
477
Tumor
0.2
431
Tumor
0.2
427
Tumor
0.2
375
Tumor
0.2
112
Tumor
0.2
724
Normal
0.2
517
Tumor
0.2
463
Tumor
0.2
695
Tumor
0.2
647
Tumor
0.2
817
Tumor
0.2
814
Normal
0.2
1031
Tumor
0.2
385
Tumor
0.2
387
Tumor
0.2
573
Tumor
0.2
943
Tumor
0.2
455
Tumor
0.2
523
Tumor
0.2
663
Tumor
0.2
567
Tumor
0.2
813
Tumor
0.2
883
Tumor
0.2
563
Tumor
0.2
1025
Tumor
0.2
363
Tumor
0.2
533
Tumor
0.1
161
Tumor
0.1
545
Tumor
0.1
445
Tumor
0.1
341
Tumor
0.1
865
Tumor
0.1
777
Tumor
0.1
311
Tumor
0.1
953
Tumor
0.1
1015
Tumor
0.1
493
Tumor
0.1
461
Tumor
0.1
393
Tumor
0.1
141
Tumor
0.1
473
Tumor
0.1
921
Tumor
0.1
395
Tumor
0.1
715
Tumor
0.1
535
Tumor
0.1
467
Tumor
0.1
957
Tumor
0.1
487
Tumor
0.1
384
Normal
0.1
471
Tumor
0.1
355
Tumor
0.1
963
Tumor
0.1
785
Tumor
0.1
1013
Tumor
0.1
343
Tumor
0.1
171
Tumor
0.0
361
Tumor
0.0
221
Tumor
0.0
923
Tumor
0.0
917
Tumor
0.0
267
Tumor
0.0
137
Tumor
0.0
187
Tumor
0.0
444
Normal
0.0
185
Tumor
0.0
857
Tumor
0.0
858
Normal
0.0
937
Tumor
0.0
283
Tumor
0.0
472
Normal
0.0
213
Tumor
0.0
873
Tumor
0.0
365
Tumor
0.0
525
Tumor
0.0
223
Tumor
0.0
641
Tumor
0.0
423
Tumor
0.0
435
Tumor
0.0
863
Tumor
0.0
635
Tumor
0.0
483
Tumor
0.0
113
Tumor
0.0
211
Tumor
0.0
123
Tumor
0.0
268
Normal
0.0
553
Tumor
0.0
515
Tumor
0.0
465
Tumor
0.0
478
Normal
0.0
352
Normal
0.0
332
Normal
0.0
867
Tumor
0.0
353
Tumor
0.0
127
Tumor
0.0
713
Tumor
0.0
755
Tumor
0.0
261
Tumor
0.0
1041
Tumor
0.0
498
Normal
0.0
938
Normal
0.0
861
Tumor
0.0
368
Normal
0.0
722
Normal
0.0
451
Tumor
0.0
217
Tumor
0.0
1027
Tumor
0.0
741
Tumor
0.0
142
Normal
-0.1
145
Tumor
-0.1
851
Tumor
-0.1
882
Normal
-0.1
125
Tumor
-0.1
1045
Tumor
-0.1
534
Normal
-0.1
362
Normal
-0.1
415
Tumor
-0.1
538
Normal
-0.1
984
Normal
-0.1
978
Normal
-0.1
824
Normal
-0.1
1043
Tumor
-0.1
686
Normal
-0.1
745
Tumor
-0.1
195
Tumor
-0.1
492
Normal
-0.1
557
Tumor
-0.1
823
Tumor
-0.1
913
Tumor
-0.1
954
Normal
-0.1
878
Normal
-0.1
392
Normal
-0.1
572
Normal
-0.1
528
Normal
-0.1
421
Tumor
-0.1
298
Normal
-0.1
744
Normal
-0.1
981
Tumor
-0.1
955
Tumor
-0.1
852
Normal
-0.1
386
Normal
-0.1
546
Normal
-0.1
314
Normal
-0.1
481
Tumor
-0.1
912
Normal
-0.1
786
Normal
-0.1
192
Normal
-0.1
344
Normal
-0.1
231
Tumor
-0.1
376
Normal
-0.1
636
Normal
-0.1
618
Normal
-0.1
474
Normal
-0.1
617
Tumor
-0.1
396
Normal
-0.1
756
Normal
-0.1
488
Normal
-0.1
982
Normal
-0.1
1014
Normal
-0.1
944
Normal
-0.1
1016
Normal
-0.1
627
Tumor
-0.1
312
Normal
-0.1
327
Tumor
-0.1
482
Normal
-0.1
513
Tumor
-0.1
462
Normal
-0.1
464
Normal
-0.1
721
Tumor
-0.1
976
Normal
-0.1
434
Normal
-0.1
714
Normal
-0.1
278
Normal
-0.1
696
Normal
-0.1
257
Tumor
-0.1
964
Normal
-0.1
884
Normal
-0.1
536
Normal
-0.1
394
Normal
-0.1
746
Normal
-0.1
742
Normal
-0.1
364
Normal
-0.1
136
Normal
-0.1
491
Tumor
-0.1
388
Normal
-0.1
911
Tumor
-0.1
412
Normal
-0.1
484
Normal
-0.1
524
Normal
-0.1
224
Normal
-0.1
432
Normal
-0.1
366
Normal
-0.2
866
Normal
-0.2
818
Normal
-0.2
574
Normal
-0.2
968
Normal
-0.2
328
Normal
-0.2
672
Normal
-0.2
554
Normal
-0.2
1046
Normal
-0.2
816
Normal
-0.2
356
Normal
-0.2
146
Normal
-0.2
925
Tumor
-0.2
416
Normal
-0.2
966
Normal
-0.2
354
Normal
-0.2
924
Normal
-0.2
615
Tumor
-0.2
191
Tumor
-0.2
446
Normal
-0.2
428
Normal
-0.2
558
Normal
-0.2
778
Normal
-0.2
738
Normal
-0.2
697
Tumor
-0.2
114
Normal
-0.2
162
Normal
-0.2
436
Normal
-0.2
426
Normal
-0.2
728
Normal
-0.2
922
Normal
-0.2
664
Normal
-0.2
148
Normal
-0.2
926
Normal
-0.2
284
Normal
-0.2
262
Normal
-0.2
628
Normal
-0.2
126
Normal
-0.2
186
Normal
-0.2
342
Normal
-0.2
918
Normal
-0.2
914
Normal
-0.2
111
Normal
-0.2
414
Normal
-0.2
452
Normal
-0.2
232
Normal
-0.2
138
Normal
-0.2
172
Normal
-0.2
516
Normal
-0.2
716
Normal
-0.2
662
Normal
-0.2
616
Normal
-0.2
698
Normal
-0.2
514
Normal
-0.2
564
Normal
-0.2
518
Normal
-0.2
466
Normal
-0.2
456
Normal
-0.2
723
Tumor
-0.2
286
Normal
-0.2
864
Normal
-0.2
468
Normal
-0.2
422
Normal
-0.2
188
Normal
-0.2
358
Normal
-0.2
956
Normal
-0.2
1028
Normal
-0.2
272
Normal
-0.2
494
Normal
-0.2
642
Normal
-0.2
1026
Normal
-0.2
1042
Normal
-0.2
448
Normal
-0.2
874
Normal
-0.2
128
Normal
-0.2
952
Normal
-0.2
568
Normal
-0.2
258
Normal
-0.2
648
Normal
-0.3
124
Normal
-0.3
958
Normal
-0.3
212
Normal
-0.3
915
Tumor
-0.3
666
Normal
-0.3
228
Normal
-0.3
222
Normal
-0.3
916
Normal
-0.3
424
Normal
-0.3
147
Tumor
-0.3
868
Normal
-0.3
526
Normal
-0.3
132
Normal
-0.3
196
Normal
-0.3
862
Normal
-0.3
1032
Normal
-0.3
1044
Normal
-0.3
214
Normal
-0.3
218
Normal
-0.3
1022
Normal
-0.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
