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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRAF7 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
75.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
61.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
59.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
56.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
56.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
54.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
54.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
52.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
51.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
51.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
50.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
50.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
49.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
49.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
49.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
49.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
48.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
48.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
47.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
46.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
46.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
44.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
44.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
43.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
43.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
43.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
43.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
42.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
41.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
39.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
39.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
39.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
39.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
39.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
38.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
38.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
38.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
38.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
37.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
35.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
34.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
34.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
34.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
34.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
33.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
32.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
32.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
32.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
32.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
32.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
29.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
28.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
27.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
26.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
26.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
25.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
23.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
22.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRAF7 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.0
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
83.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
65.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
60.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
59.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
51.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
46.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
46.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
46.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
46.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
45.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
44.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
44.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
43.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
42.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
42.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
41.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
39.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
38.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
38.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
36.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
35.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
34.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
34.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
32.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
31.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
31.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
29.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
28.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
423
Tumor
1.4
571
Tumor
1.0
925
Tumor
0.7
937
Tumor
0.7
713
Tumor
0.6
477
Tumor
0.6
964
Normal
0.5
514
Normal
0.5
415
Tumor
0.5
465
Tumor
0.5
616
Normal
0.5
617
Tumor
0.5
573
Tumor
0.5
526
Normal
0.5
364
Normal
0.4
564
Normal
0.4
356
Normal
0.4
314
Normal
0.4
648
Normal
0.4
1046
Normal
0.4
533
Tumor
0.4
756
Normal
0.4
412
Normal
0.4
563
Tumor
0.4
497
Tumor
0.4
572
Normal
0.4
967
Tumor
0.4
414
Normal
0.4
852
Normal
0.4
723
Tumor
0.4
473
Tumor
0.4
918
Normal
0.4
1014
Normal
0.4
268
Normal
0.4
534
Normal
0.4
786
Normal
0.4
1016
Normal
0.4
636
Normal
0.3
341
Tumor
0.3
424
Normal
0.3
422
Normal
0.3
474
Normal
0.3
923
Tumor
0.3
428
Normal
0.3
472
Normal
0.3
484
Normal
0.3
922
Normal
0.3
662
Normal
0.3
433
Tumor
0.3
462
Normal
0.3
981
Tumor
0.3
528
Normal
0.3
951
Tumor
0.3
536
Normal
0.3
695
Tumor
0.3
482
Normal
0.3
926
Normal
0.3
778
Normal
0.3
714
Normal
0.3
824
Normal
0.3
978
Normal
0.3
518
Normal
0.3
568
Normal
0.3
328
Normal
0.3
416
Normal
0.3
916
Normal
0.3
968
Normal
0.3
697
Tumor
0.3
868
Normal
0.3
487
Tumor
0.3
924
Normal
0.3
228
Normal
0.3
664
Normal
0.3
546
Normal
0.3
327
Tumor
0.3
976
Normal
0.3
686
Normal
0.3
958
Normal
0.3
635
Tumor
0.3
524
Normal
0.3
982
Normal
0.3
627
Tumor
0.3
516
Normal
0.3
286
Normal
0.3
558
Normal
0.2
984
Normal
0.2
488
Normal
0.2
436
Normal
0.2
461
Tumor
0.2
884
Normal
0.2
874
Normal
0.2
1045
Tumor
0.2
332
Normal
0.2
722
Normal
0.2
298
Normal
0.2
426
Normal
0.2
481
Tumor
0.2
716
Normal
0.2
672
Normal
0.2
448
Normal
0.2
746
Normal
0.2
446
Normal
0.2
1044
Normal
0.2
814
Normal
0.2
915
Tumor
0.2
628
Normal
0.2
427
Tumor
0.2
818
Normal
0.2
966
Normal
0.2
1015
Tumor
0.2
866
Normal
0.2
696
Normal
0.2
554
Normal
0.2
525
Tumor
0.2
721
Tumor
0.2
615
Tumor
0.2
432
Normal
0.2
698
Normal
0.2
494
Normal
0.2
618
Normal
0.2
574
Normal
0.2
515
Tumor
0.2
1042
Normal
0.2
456
Normal
0.2
913
Tumor
0.2
666
Normal
0.2
955
Tumor
0.2
258
Normal
0.2
478
Normal
0.2
413
Tumor
0.2
813
Tumor
0.2
395
Tumor
0.2
882
Normal
0.2
272
Normal
0.2
977
Tumor
0.2
862
Normal
0.2
112
Tumor
0.2
513
Tumor
0.1
1028
Normal
0.1
355
Tumor
0.1
742
Normal
0.1
212
Normal
0.1
921
Tumor
0.1
498
Normal
0.1
956
Normal
0.1
232
Normal
0.1
858
Normal
0.1
914
Normal
0.1
284
Normal
0.1
952
Normal
0.1
538
Normal
0.1
443
Tumor
0.1
131
Tumor
0.1
188
Normal
0.1
434
Normal
0.1
816
Normal
0.1
864
Normal
0.1
912
Normal
0.1
452
Normal
0.1
1026
Normal
0.1
267
Tumor
0.1
192
Normal
0.1
545
Tumor
0.1
873
Tumor
0.1
447
Tumor
0.1
464
Normal
0.1
1022
Normal
0.1
451
Tumor
0.1
975
Tumor
0.1
755
Tumor
0.1
444
Normal
0.1
917
Tumor
0.1
421
Tumor
0.1
1032
Normal
0.1
911
Tumor
0.1
114
Normal
0.1
878
Normal
0.1
384
Normal
0.1
366
Normal
0.1
148
Normal
0.1
492
Normal
0.1
162
Normal
0.1
195
Tumor
0.1
535
Tumor
0.1
1013
Tumor
0.1
963
Tumor
0.1
493
Tumor
0.1
224
Normal
0.0
537
Tumor
0.0
867
Tumor
0.0
738
Normal
0.0
745
Tumor
0.0
231
Tumor
0.0
388
Normal
0.0
218
Normal
0.0
785
Tumor
0.0
368
Normal
0.0
777
Tumor
0.0
517
Tumor
0.0
352
Normal
0.0
957
Tumor
0.0
455
Tumor
0.0
817
Tumor
0.0
354
Normal
0.0
142
Normal
0.0
222
Normal
0.0
186
Normal
0.0
113
Tumor
0.0
136
Normal
0.0
396
Normal
0.0
172
Normal
0.0
214
Normal
0.0
647
Tumor
0.0
161
Tumor
0.0
468
Normal
0.0
553
Tumor
0.0
663
Tumor
0.0
386
Normal
0.0
126
Normal
0.0
943
Tumor
0.0
715
Tumor
0.0
466
Normal
0.0
111
Normal
0.0
471
Tumor
0.0
671
Tumor
0.0
217
Tumor
0.0
965
Tumor
0.0
944
Normal
0.0
362
Normal
0.0
138
Normal
0.0
527
Tumor
0.0
491
Tumor
0.0
312
Normal
0.0
343
Tumor
0.0
358
Normal
-0.1
883
Tumor
-0.1
938
Normal
-0.1
954
Normal
-0.1
196
Normal
-0.1
145
Tumor
-0.1
642
Normal
-0.1
1043
Tumor
-0.1
1041
Tumor
-0.1
392
Normal
-0.1
127
Tumor
-0.1
357
Tumor
-0.1
187
Tumor
-0.1
661
Tumor
-0.1
728
Normal
-0.1
376
Normal
-0.1
823
Tumor
-0.1
128
Normal
-0.1
523
Tumor
-0.1
353
Tumor
-0.1
435
Tumor
-0.1
141
Tumor
-0.1
385
Tumor
-0.1
271
Tumor
-0.1
483
Tumor
-0.1
641
Tumor
-0.1
411
Tumor
-0.1
857
Tumor
-0.1
394
Normal
-0.1
744
Normal
-0.1
344
Normal
-0.1
881
Tumor
-0.1
135
Tumor
-0.1
463
Tumor
-0.2
227
Tumor
-0.2
391
Tumor
-0.2
665
Tumor
-0.2
221
Tumor
-0.2
953
Tumor
-0.2
1021
Tumor
-0.2
741
Tumor
-0.2
567
Tumor
-0.2
185
Tumor
-0.2
132
Normal
-0.2
861
Tumor
-0.2
367
Tumor
-0.2
467
Tumor
-0.2
1025
Tumor
-0.2
363
Tumor
-0.2
311
Tumor
-0.2
387
Tumor
-0.2
124
Normal
-0.2
285
Tumor
-0.2
191
Tumor
-0.2
815
Tumor
-0.2
983
Tumor
-0.2
223
Tumor
-0.2
277
Tumor
-0.2
851
Tumor
-0.2
365
Tumor
-0.3
557
Tumor
-0.3
283
Tumor
-0.3
342
Normal
-0.3
297
Tumor
-0.3
211
Tumor
-0.3
262
Normal
-0.3
445
Tumor
-0.3
863
Tumor
-0.3
146
Normal
-0.3
137
Tumor
-0.3
261
Tumor
-0.3
1031
Tumor
-0.3
213
Tumor
-0.3
171
Tumor
-0.3
1027
Tumor
-0.3
865
Tumor
-0.3
724
Normal
-0.4
877
Tumor
-0.4
685
Tumor
-0.4
425
Tumor
-0.4
727
Tumor
-0.4
431
Tumor
-0.4
257
Tumor
-0.4
361
Tumor
-0.4
393
Tumor
-0.4
278
Normal
-0.4
147
Tumor
-0.5
123
Tumor
-0.5
331
Tumor
-0.5
743
Tumor
-0.5
125
Tumor
-0.5
737
Tumor
-0.6
351
Tumor
-0.6
383
Tumor
-0.6
313
Tumor
-0.6
375
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
