MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.6 nTPM
HPA Brain:54.0 nTPM
GTEx:57.6 nTPM
FANTOM5:15.6 Scaled Tags Per Million
Pig:228.0 nTPM
Mouse:6.6 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.1
2219 Male, age 76, both hemispheres 44.6
2828 Female, age 72, unknown 38.6
2666 Male, age 74, left hemisphere 38.1
1833 Male, age 53, unknown 36.6
1870 Female, age 42, unknown 34.9
1830 Male, age 51, unknown 33.2
2019 Male, age 18, unknown 31.4
2586 Male, age 75, left hemisphere 31.1
2411 Female, age 72, unknown 26.9
1827 Male, age 72, unknown 25.6
Dorsal raphe nucleus
nTPM: 39.8
2016 Female, age 72, unknown 42.8
2298 Female, age 72, unknown 42.4
1828 Male, age 53, unknown 42.1
2047 Male, age 72, unknown 37.8
2750 Male, age 76, both hemispheres 34.2
Inferior colliculus
nTPM: 34.9
1890 Male, age 53, unknown 44.2
2849 Male, age 72, unknown 34.3
2097 Female, age 72, unknown 34.2
1848 Female, age 42, unknown 26.8
Median raphe nucleus
nTPM: 54.0
2220 Male, age 76, midline 54.0
Periaquaductal grey, anterior
nTPM: 32.4
2502 Female, age 75, unknown 40.4
1947 Male, age 18, unknown 29.2
1795 Male, age 51, unknown 27.6
Periaquaductal grey, dorsal
nTPM: 41.2
2850 Male, age 76, both hemispheres 77.0
1831 Male, age 72, unknown 30.2
1840 Male, age 53, unknown 30.0
2464 Female, age 72, unknown 27.6
Periaquaductal grey, lateral
nTPM: 45.3
2140 Male, age 76, both hemispheres 71.4
2053 Male, age 18, unknown 36.3
2272 Male, age 74, both hemispheres 28.3
Pretectal area
nTPM: 29.4
2825 Male, age 18, unknown 41.7
2316 Male, age 76, right hemisphere 37.6
2224 Female, age 72, unknown 32.9
1817 Female, age 42, unknown 30.7
1815 Male, age 53, unknown 29.5
2273 Male, age 74, both hemispheres 28.6
2667 Female, age 75, unknown 28.5
2007 Male, age 72, unknown 28.1
1944 Female, age 72, unknown 24.1
1816 Male, age 51, unknown 23.1
2407 Male, age 75, both hemispheres 18.4
Red nucleus
nTPM: 37.7
2227 Male, age 72, unknown 47.1
1904 Male, age 53, unknown 45.7
1954 Female, age 42, unknown 45.3
1821 Female, age 72, unknown 44.5
2769 Male, age 72, unknown 44.4
2503 Female, age 72, unknown 38.3
2588 Male, age 74, left hemisphere 34.7
1865 Male, age 51, unknown 33.2
2823 Male, age 76, right hemisphere 33.0
2725 Female, age 75, unknown 32.0
2785 Male, age 18, unknown 27.6
2584 Male, age 75, left hemisphere 26.5
Substantia nigra
nTPM: 42.0
2665 Male, age 74, both hemispheres 65.0
2699 Male, age 18, unknown 61.2
1851 Male, age 51, unknown 53.6
2241 Male, age 72, unknown 41.6
1916 Female, age 42, unknown 41.4
2590 Female, age 75, unknown 39.5
2583 Male, age 75, right hemisphere 32.6
1889 Female, age 72, unknown 30.9
2409 Female, age 72, unknown 29.0
1941 Male, age 53, unknown 25.5
Superior colliculus
nTPM: 26.9
2587 Male, age 74, left hemisphere 33.0
1839 Male, age 51, unknown 29.8
2087 Female, age 72, unknown 29.8
1995 Male, age 72, unknown 29.4
1796 Male, age 53, unknown 28.3
1913 Female, age 42, unknown 27.7
2668 Female, age 75, unknown 24.9
2664 Male, age 75, both hemispheres 22.5
2261 Male, age 18, unknown 21.8
1895 Male, age 76, right hemisphere 21.4
Ventral tegmental area
nTPM: 42.7
2218 Male, age 76, both hemispheres 57.3
1942 Male, age 51, unknown 45.7
1915 Female, age 42, unknown 41.5
2021 Male, age 53, unknown 41.1
2223 Female, age 72, unknown 37.5
2410 Female, age 72, unknown 33.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 57.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.6
Samples: 139

Max nTPM: 222.7
Min nTPM: 11.5
Std nTPM: 34.5
Median nTPM: 46.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 222.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 201.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 159.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 147.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 138.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 137.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 135.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 122.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 119.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 112.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 111.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 15.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.6
FF:10158-103A5 76 years, female 15.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 228.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 228.0
Samples: 4

Max nTPM: 272.9
Min nTPM: 196.9
Sample A Female 235.0
Sample B Female 272.9
Sample C Male 207.1
Sample D Male 196.9
Midbrain
nTPM: 189.0
Samples: 4

Max nTPM: 253.6
Min nTPM: 142.4
Sample A Female 201.4
Sample B Female 253.6
Sample C Male 142.4
Sample D Male 158.6
Periaqueductal gray
nTPM: 214.1
Samples: 3

Max nTPM: 255.5
Min nTPM: 187.2
Sample B Female 199.5
Sample C Male 255.5
Sample D Male 187.2
Superior colliculi
nTPM: 214.9
Samples: 4

Max nTPM: 245.5
Min nTPM: 159.2
Sample A Female 240.4
Sample B Female 245.5
Sample C Male 159.2
Sample D Male 214.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.6
Samples: 4

Max nTPM: 8.2
Min nTPM: 3.9
Sample A Male 8.2
Sample B Male 7.8
Sample C Female 3.9
Sample D Female 6.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
71378504 Antisense, RP_050510_04_A10, Mouse strain C57BL/6J (56 days, male) 2.9

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