We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MGAT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
69.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
312.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
189.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
184.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
184.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
170.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
151.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
148.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
140.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
126.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
126.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
122.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
122.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
121.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
120.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
119.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
117.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
116.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
116.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
115.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
114.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
111.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
111.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
109.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
109.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
108.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
106.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
106.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
105.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
104.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
103.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
102.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
101.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
101.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
101.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
101.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
100.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
98.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
96.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
95.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
95.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
95.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
94.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
93.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
93.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
93.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
93.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
92.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
92.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
91.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
91.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
91.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
91.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
90.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
89.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
88.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
87.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
87.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
86.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
86.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
86.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
86.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
86.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
86.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
86.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
85.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
85.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
85.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
85.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
84.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
84.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
84.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
84.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
84.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
83.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
83.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
83.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
83.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
83.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
82.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
82.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
82.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
82.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
82.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
82.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
82.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
82.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
82.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
81.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
81.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
81.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
81.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
81.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
81.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
81.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
81.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
81.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
80.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
80.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
80.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
80.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
80.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
80.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
80.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
80.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
80.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
80.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
79.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
79.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
79.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
78.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
78.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
78.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
78.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
78.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
78.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
77.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
77.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
77.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
76.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
76.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
76.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
76.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
75.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
75.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
75.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
75.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
75.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
75.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
74.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
74.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
74.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
73.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
73.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
73.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
73.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
72.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
72.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
72.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
72.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
72.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
71.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
71.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
71.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
71.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
71.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
71.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
71.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
71.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
70.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
70.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
70.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
69.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
69.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
69.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
68.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
68.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
68.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
68.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
67.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
67.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
67.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
67.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
67.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
67.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
66.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
66.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
66.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
66.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
66.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
66.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
65.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
65.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
65.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
65.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
65.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
64.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
64.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
64.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
64.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
64.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
64.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
64.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
63.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
63.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
63.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
63.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
63.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
63.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
63.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
63.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
63.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
62.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
62.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
62.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
62.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
62.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
62.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
62.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
61.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
61.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
61.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
61.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
61.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
61.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
61.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
61.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
61.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
60.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
60.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
60.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
60.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
60.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
60.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
60.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
60.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
60.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
59.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
59.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
59.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
59.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
58.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
58.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
58.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
58.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
58.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
58.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
58.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
57.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
57.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
57.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
57.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
57.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
57.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
57.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
56.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
56.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
56.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
56.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
56.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
56.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
56.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
55.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
55.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
55.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
55.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
55.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
55.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
54.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
54.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
54.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
54.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
54.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
54.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
54.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
53.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
53.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
53.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
53.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
53.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
53.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
53.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
53.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
53.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
53.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
52.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
52.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
52.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
51.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
51.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
51.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
51.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
51.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
51.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
51.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
51.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
51.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
50.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
50.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
50.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
50.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
50.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
50.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
50.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
49.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
49.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
49.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
49.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
49.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
49.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
48.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
48.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
48.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
48.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
47.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
47.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
47.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
47.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
47.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
47.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
46.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
46.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
46.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
46.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
46.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
46.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
45.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
45.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
45.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
45.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
44.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
44.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
44.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
44.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
43.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
42.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
42.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
42.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
41.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
41.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
41.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
41.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
41.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
41.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
40.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
40.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
40.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
40.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
39.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
39.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
39.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
38.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
38.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
38.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
37.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
36.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
36.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
35.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
34.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
34.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
34.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
34.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
31.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
31.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
31.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
29.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
29.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
27.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
27.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
25.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MGAT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
62.4
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
225.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
207.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
161.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
147.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
140.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
125.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
120.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
116.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
107.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
107.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
104.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
103.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
101.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
100.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
96.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
95.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
90.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
90.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
89.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
89.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
88.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
87.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
86.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
86.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
85.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
85.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
83.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
83.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
81.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
81.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
80.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
80.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
80.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
80.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
80.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
79.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
79.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
78.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
78.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
77.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
76.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
76.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
76.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
76.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
75.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
75.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
74.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
74.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
73.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
73.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
73.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
73.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
73.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
72.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
72.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
72.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
72.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
71.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
71.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
71.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
71.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
70.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
70.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
70.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
70.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
70.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
70.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
69.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
69.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
69.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
69.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
68.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
68.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
68.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
67.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
66.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
66.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
65.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
65.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
65.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
65.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
65.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
65.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
65.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
64.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
64.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
64.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
64.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
64.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
64.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
64.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
63.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
63.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
63.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
63.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
63.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
62.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
62.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
62.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
62.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
62.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
62.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
62.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
62.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
61.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
61.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
61.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
60.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
60.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
60.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
60.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
59.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
58.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
58.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
58.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
58.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
58.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
57.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
57.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
57.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
56.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
56.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
56.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
56.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
56.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
56.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
56.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
55.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
55.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
55.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
55.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
55.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
55.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
55.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
54.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
54.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
54.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
54.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
54.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
54.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
54.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
54.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
53.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
53.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
53.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
52.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
52.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
52.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
51.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
51.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
51.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
51.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
50.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
50.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
50.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
50.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
50.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
49.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
49.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
49.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
49.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
49.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
48.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
48.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
47.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
47.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
47.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
47.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
47.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
47.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
47.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
46.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
46.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
46.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
46.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
46.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
46.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
45.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
45.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
45.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
45.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
44.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
44.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
44.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
44.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
44.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
44.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
43.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
43.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
43.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
43.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
42.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
42.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
42.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
42.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
41.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
41.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
41.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
40.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
40.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
40.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
40.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
40.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
39.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
39.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
39.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
38.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
38.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
38.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
38.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
38.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
37.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
37.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
36.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
35.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
33.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
33.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
33.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
28.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
1.0
383
Tumor
0.9
353
Tumor
0.9
223
Tumor
0.9
123
Tumor
0.9
113
Tumor
0.8
191
Tumor
0.7
641
Tumor
0.7
413
Tumor
0.7
937
Tumor
0.7
257
Tumor
0.7
351
Tumor
0.7
557
Tumor
0.7
665
Tumor
0.6
861
Tumor
0.6
724
Normal
0.6
145
Tumor
0.6
527
Tumor
0.6
213
Tumor
0.6
635
Tumor
0.5
713
Tumor
0.5
414
Normal
0.5
617
Tumor
0.5
913
Tumor
0.5
187
Tumor
0.5
232
Normal
0.5
911
Tumor
0.5
195
Tumor
0.5
423
Tumor
0.5
647
Tumor
0.5
467
Tumor
0.5
261
Tumor
0.5
426
Normal
0.5
523
Tumor
0.5
125
Tumor
0.5
283
Tumor
0.5
368
Normal
0.5
428
Normal
0.5
387
Tumor
0.4
221
Tumor
0.4
268
Normal
0.4
258
Normal
0.4
422
Normal
0.4
218
Normal
0.4
277
Tumor
0.4
262
Normal
0.4
147
Tumor
0.4
851
Tumor
0.4
217
Tumor
0.4
124
Normal
0.4
424
Normal
0.4
141
Tumor
0.4
743
Tumor
0.4
172
Normal
0.3
114
Normal
0.3
666
Normal
0.3
136
Normal
0.3
272
Normal
0.3
162
Normal
0.3
452
Normal
0.3
231
Tumor
0.3
391
Tumor
0.3
1043
Tumor
0.3
491
Tumor
0.3
111
Normal
0.3
127
Tumor
0.3
332
Normal
0.3
126
Normal
0.3
951
Tumor
0.3
1031
Tumor
0.3
361
Tumor
0.3
862
Normal
0.3
138
Normal
0.3
1025
Tumor
0.3
313
Tumor
0.3
132
Normal
0.3
392
Normal
0.3
755
Tumor
0.3
285
Tumor
0.3
267
Tumor
0.3
636
Normal
0.3
186
Normal
0.3
161
Tumor
0.3
526
Normal
0.2
463
Tumor
0.2
344
Normal
0.2
314
Normal
0.2
188
Normal
0.2
662
Normal
0.2
451
Tumor
0.2
721
Tumor
0.2
664
Normal
0.2
571
Tumor
0.2
443
Tumor
0.2
227
Tumor
0.2
497
Tumor
0.2
411
Tumor
0.2
214
Normal
0.2
1041
Tumor
0.2
558
Normal
0.2
384
Normal
0.2
487
Tumor
0.2
388
Normal
0.2
327
Tumor
0.2
146
Normal
0.2
427
Tumor
0.2
271
Tumor
0.2
1028
Normal
0.2
863
Tumor
0.2
148
Normal
0.2
331
Tumor
0.2
357
Tumor
0.2
536
Normal
0.2
564
Normal
0.2
642
Normal
0.2
224
Normal
0.2
376
Normal
0.2
616
Normal
0.2
697
Tumor
0.2
456
Normal
0.2
573
Tumor
0.2
366
Normal
0.2
465
Tumor
0.2
672
Normal
0.2
648
Normal
0.2
396
Normal
0.2
433
Tumor
0.2
431
Tumor
0.2
394
Normal
0.2
464
Normal
0.2
137
Tumor
0.2
358
Normal
0.2
222
Normal
0.1
434
Normal
0.1
436
Normal
0.1
983
Tumor
0.1
192
Normal
0.1
1045
Tumor
0.1
352
Normal
0.1
468
Normal
0.1
563
Tumor
0.1
446
Normal
0.1
568
Normal
0.1
628
Normal
0.1
867
Tumor
0.1
553
Tumor
0.1
432
Normal
0.1
278
Normal
0.1
1044
Normal
0.1
572
Normal
0.1
362
Normal
0.1
528
Normal
0.1
686
Normal
0.1
574
Normal
0.1
286
Normal
0.1
813
Tumor
0.1
728
Normal
0.1
866
Normal
0.1
514
Normal
0.1
312
Normal
0.1
461
Tumor
0.1
884
Normal
0.1
196
Normal
0.1
444
Normal
0.1
661
Tumor
0.1
142
Normal
0.1
814
Normal
0.1
663
Tumor
0.1
393
Tumor
0.1
524
Normal
0.1
466
Normal
0.1
386
Normal
0.1
425
Tumor
0.1
1026
Normal
0.1
912
Normal
0.1
722
Normal
0.1
953
Tumor
0.1
128
Normal
0.1
742
Normal
0.1
298
Normal
0.1
375
Tumor
0.1
185
Tumor
0.0
341
Tumor
0.0
627
Tumor
0.0
823
Tumor
0.0
354
Normal
0.0
365
Tumor
0.0
864
Normal
0.0
618
Normal
0.0
447
Tumor
0.0
494
Normal
0.0
448
Normal
0.0
696
Normal
0.0
342
Normal
0.0
926
Normal
0.0
395
Tumor
0.0
746
Normal
0.0
738
Normal
0.0
615
Tumor
0.0
517
Tumor
0.0
284
Normal
0.0
824
Normal
0.0
488
Normal
0.0
914
Normal
0.0
955
Tumor
0.0
385
Tumor
0.0
212
Normal
0.0
518
Normal
0.0
363
Tumor
0.0
816
Normal
0.0
1027
Tumor
0.0
882
Normal
0.0
297
Tumor
0.0
493
Tumor
0.0
671
Tumor
0.0
778
Normal
0.0
1021
Tumor
0.0
356
Normal
0.0
857
Tumor
0.0
873
Tumor
0.0
786
Normal
0.0
534
Normal
0.0
964
Normal
0.0
412
Normal
0.0
484
Normal
0.0
112
Tumor
0.0
938
Normal
-0.1
228
Normal
-0.1
367
Tumor
-0.1
328
Normal
-0.1
535
Tumor
-0.1
756
Normal
-0.1
364
Normal
-0.1
922
Normal
-0.1
878
Normal
-0.1
1032
Normal
-0.1
858
Normal
-0.1
723
Tumor
-0.1
421
Tumor
-0.1
966
Normal
-0.1
714
Normal
-0.1
716
Normal
-0.1
695
Tumor
-0.1
1013
Tumor
-0.1
515
Tumor
-0.1
462
Normal
-0.1
492
Normal
-0.1
554
Normal
-0.1
852
Normal
-0.1
533
Tumor
-0.1
952
Normal
-0.1
1016
Normal
-0.1
355
Tumor
-0.1
968
Normal
-0.1
984
Normal
-0.1
698
Normal
-0.1
171
Tumor
-0.1
868
Normal
-0.1
874
Normal
-0.1
343
Tumor
-0.2
546
Normal
-0.2
474
Normal
-0.2
1046
Normal
-0.2
944
Normal
-0.2
745
Tumor
-0.2
516
Normal
-0.2
416
Normal
-0.2
1022
Normal
-0.2
883
Tumor
-0.2
982
Normal
-0.2
727
Tumor
-0.2
954
Normal
-0.2
881
Tumor
-0.2
963
Tumor
-0.2
923
Tumor
-0.2
967
Tumor
-0.2
415
Tumor
-0.2
877
Tumor
-0.2
445
Tumor
-0.2
135
Tumor
-0.2
498
Normal
-0.2
976
Normal
-0.2
567
Tumor
-0.2
918
Normal
-0.2
744
Normal
-0.2
311
Tumor
-0.3
1042
Normal
-0.3
1014
Normal
-0.3
211
Tumor
-0.3
435
Tumor
-0.3
977
Tumor
-0.3
956
Normal
-0.3
817
Tumor
-0.3
483
Tumor
-0.3
525
Tumor
-0.3
737
Tumor
-0.3
921
Tumor
-0.3
741
Tumor
-0.3
455
Tumor
-0.3
915
Tumor
-0.3
925
Tumor
-0.3
965
Tumor
-0.3
513
Tumor
-0.3
777
Tumor
-0.4
818
Normal
-0.4
472
Normal
-0.4
471
Tumor
-0.4
981
Tumor
-0.4
958
Normal
-0.4
715
Tumor
-0.4
916
Normal
-0.4
478
Normal
-0.4
473
Tumor
-0.4
957
Tumor
-0.4
815
Tumor
-0.4
131
Tumor
-0.4
917
Tumor
-0.4
538
Normal
-0.5
924
Normal
-0.5
482
Normal
-0.5
978
Normal
-0.5
943
Tumor
-0.5
975
Tumor
-0.5
685
Tumor
-0.5
477
Tumor
-0.6
1015
Tumor
-0.6
785
Tumor
-0.7
481
Tumor
-0.7
537
Tumor
-0.8
545
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
