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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RFTN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
130.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
114.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
102.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
94.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
77.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
71.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
62.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
62.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
61.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
60.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
57.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
53.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
52.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
52.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
52.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
49.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
46.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
45.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
45.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
44.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
43.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
42.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
40.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
40.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
39.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
39.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
38.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
38.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
38.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
38.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
36.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
34.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
34.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
33.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
32.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
31.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
27.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
27.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
25.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RFTN1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
52.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
50.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
39.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
38.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
31.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
30.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
24.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
523
Tumor
1.1
211
Tumor
1.1
913
Tumor
1.1
617
Tumor
1.0
365
Tumor
1.0
1045
Tumor
0.9
161
Tumor
0.9
884
Normal
0.9
487
Tumor
0.8
528
Normal
0.8
785
Tumor
0.8
477
Tumor
0.8
883
Tumor
0.7
737
Tumor
0.7
863
Tumor
0.7
463
Tumor
0.7
536
Normal
0.7
723
Tumor
0.7
943
Tumor
0.7
537
Tumor
0.6
141
Tumor
0.6
192
Normal
0.6
867
Tumor
0.6
327
Tumor
0.6
218
Normal
0.6
563
Tumor
0.6
481
Tumor
0.6
331
Tumor
0.6
461
Tumor
0.6
786
Normal
0.5
573
Tumor
0.5
393
Tumor
0.5
777
Tumor
0.5
455
Tumor
0.5
921
Tumor
0.5
615
Tumor
0.5
277
Tumor
0.5
852
Normal
0.5
271
Tumor
0.5
964
Normal
0.5
172
Normal
0.5
162
Normal
0.5
721
Tumor
0.5
421
Tumor
0.5
881
Tumor
0.5
125
Tumor
0.5
394
Normal
0.5
482
Normal
0.4
491
Tumor
0.4
484
Normal
0.4
857
Tumor
0.4
742
Normal
0.4
268
Normal
0.4
874
Normal
0.4
126
Normal
0.4
498
Normal
0.4
515
Tumor
0.4
483
Tumor
0.4
525
Tumor
0.4
396
Normal
0.4
386
Normal
0.4
916
Normal
0.4
666
Normal
0.4
145
Tumor
0.3
1014
Normal
0.3
423
Tumor
0.3
647
Tumor
0.3
433
Tumor
0.3
1046
Normal
0.3
464
Normal
0.3
191
Tumor
0.3
387
Tumor
0.3
187
Tumor
0.3
434
Normal
0.3
267
Tumor
0.3
664
Normal
0.3
456
Normal
0.3
222
Normal
0.3
966
Normal
0.3
146
Normal
0.3
353
Tumor
0.3
662
Normal
0.3
917
Tumor
0.3
472
Normal
0.3
262
Normal
0.3
628
Normal
0.3
882
Normal
0.3
526
Normal
0.3
524
Normal
0.3
375
Tumor
0.3
298
Normal
0.3
518
Normal
0.2
212
Normal
0.2
312
Normal
0.2
478
Normal
0.2
746
Normal
0.2
627
Tumor
0.2
467
Tumor
0.2
352
Normal
0.2
978
Normal
0.2
567
Tumor
0.2
968
Normal
0.2
926
Normal
0.2
814
Normal
0.2
195
Tumor
0.2
533
Tumor
0.2
395
Tumor
0.2
436
Normal
0.2
952
Normal
0.2
416
Normal
0.2
257
Tumor
0.2
132
Normal
0.2
937
Tumor
0.2
492
Normal
0.2
111
Normal
0.2
188
Normal
0.2
314
Normal
0.2
963
Tumor
0.2
1044
Normal
0.2
471
Tumor
0.2
357
Tumor
0.2
817
Tumor
0.2
422
Normal
0.2
414
Normal
0.2
1026
Normal
0.2
444
Normal
0.2
918
Normal
0.2
546
Normal
0.2
224
Normal
0.2
878
Normal
0.2
755
Tumor
0.2
342
Normal
0.2
716
Normal
0.2
185
Tumor
0.2
137
Tumor
0.2
778
Normal
0.1
297
Tumor
0.1
136
Normal
0.1
426
Normal
0.1
272
Normal
0.1
1015
Tumor
0.1
488
Normal
0.1
284
Normal
0.1
538
Normal
0.1
641
Tumor
0.1
1016
Normal
0.1
355
Tumor
0.1
572
Normal
0.1
635
Tumor
0.1
954
Normal
0.1
361
Tumor
0.1
148
Normal
0.1
824
Normal
0.1
648
Normal
0.1
448
Normal
0.1
127
Tumor
0.1
311
Tumor
0.1
574
Normal
0.1
186
Normal
0.1
938
Normal
0.1
392
Normal
0.1
873
Tumor
0.1
362
Normal
0.1
976
Normal
0.1
924
Normal
0.1
366
Normal
0.1
447
Tumor
0.1
953
Tumor
0.1
516
Normal
0.1
384
Normal
0.1
756
Normal
0.1
955
Tumor
0.1
618
Normal
0.1
923
Tumor
0.0
914
Normal
0.0
958
Normal
0.0
922
Normal
0.0
818
Normal
0.0
286
Normal
0.0
217
Tumor
0.0
642
Normal
0.0
446
Normal
0.0
452
Normal
0.0
142
Normal
0.0
424
Normal
0.0
364
Normal
0.0
332
Normal
0.0
868
Normal
0.0
745
Tumor
0.0
214
Normal
0.0
368
Normal
0.0
714
Normal
0.0
435
Tumor
0.0
468
Normal
0.0
1042
Normal
0.0
278
Normal
0.0
862
Normal
0.0
213
Tumor
0.0
196
Normal
0.0
462
Normal
0.0
545
Tumor
0.0
138
Normal
0.0
1032
Normal
0.0
858
Normal
0.0
982
Normal
0.0
465
Tumor
0.0
912
Normal
0.0
984
Normal
0.0
412
Normal
0.0
698
Normal
0.0
534
Normal
0.0
385
Tumor
0.0
258
Normal
0.0
956
Normal
0.0
866
Normal
0.0
672
Normal
-0.1
283
Tumor
-0.1
823
Tumor
-0.1
744
Normal
-0.1
616
Normal
-0.1
1028
Normal
-0.1
428
Normal
-0.1
228
Normal
-0.1
686
Normal
-0.1
636
Normal
-0.1
358
Normal
-0.1
474
Normal
-0.1
388
Normal
-0.1
513
Tumor
-0.1
113
Tumor
-0.1
975
Tumor
-0.1
816
Normal
-0.1
514
Normal
-0.1
864
Normal
-0.1
951
Tumor
-0.1
554
Normal
-0.1
415
Tumor
-0.1
344
Normal
-0.1
558
Normal
-0.1
383
Tumor
-0.1
494
Normal
-0.1
124
Normal
-0.1
432
Normal
-0.1
466
Normal
-0.1
564
Normal
-0.2
313
Tumor
-0.2
944
Normal
-0.2
1022
Normal
-0.2
738
Normal
-0.2
695
Tumor
-0.2
147
Tumor
-0.2
443
Tumor
-0.2
1021
Tumor
-0.2
696
Normal
-0.2
114
Normal
-0.2
343
Tumor
-0.2
376
Normal
-0.2
356
Normal
-0.2
232
Normal
-0.2
568
Normal
-0.2
328
Normal
-0.3
861
Tumor
-0.3
697
Tumor
-0.3
223
Tumor
-0.3
977
Tumor
-0.3
728
Normal
-0.3
813
Tumor
-0.3
724
Normal
-0.3
722
Normal
-0.3
661
Tumor
-0.3
493
Tumor
-0.3
925
Tumor
-0.3
535
Tumor
-0.3
1025
Tumor
-0.4
663
Tumor
-0.4
741
Tumor
-0.4
354
Normal
-0.4
413
Tumor
-0.4
553
Tumor
-0.4
128
Normal
-0.4
451
Tumor
-0.5
391
Tumor
-0.5
427
Tumor
-0.5
425
Tumor
-0.5
527
Tumor
-0.5
135
Tumor
-0.6
727
Tumor
-0.6
517
Tumor
-0.6
965
Tumor
-0.6
1031
Tumor
-0.6
363
Tumor
-0.6
445
Tumor
-0.6
865
Tumor
-0.7
713
Tumor
-0.7
671
Tumor
-0.7
497
Tumor
-0.7
571
Tumor
-0.8
557
Tumor
-0.8
341
Tumor
-0.8
221
Tumor
-0.8
431
Tumor
-0.8
285
Tumor
-0.8
715
Tumor
-0.8
367
Tumor
-0.9
877
Tumor
-0.9
1027
Tumor
-0.9
261
Tumor
-0.9
1041
Tumor
-0.9
981
Tumor
-0.9
983
Tumor
-1.0
1043
Tumor
-1.0
227
Tumor
-1.0
473
Tumor
-1.0
957
Tumor
-1.0
131
Tumor
-1.1
1013
Tumor
-1.1
915
Tumor
-1.1
743
Tumor
-1.1
911
Tumor
-1.1
665
Tumor
-1.1
171
Tumor
-1.2
815
Tumor
-1.3
967
Tumor
-1.3
851
Tumor
-1.4
231
Tumor
-1.4
685
Tumor
-1.4
411
Tumor
-1.5
351
Tumor
-1.6
123
Tumor
-1.7
112
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
