MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.5 nTPM
HPA Brain:16.9 nTPM
GTEx:22.5 nTPM
FANTOM5:42.0 Scaled Tags Per Million
Pig:34.5 nTPM
Mouse:8.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.6
2586 Male, age 75, left hemisphere 23.9
2411 Female, age 72, unknown 17.4
1827 Male, age 72, unknown 16.1
2019 Male, age 18, unknown 16.0
1830 Male, age 51, unknown 15.0
2828 Female, age 72, unknown 15.0
2666 Male, age 74, left hemisphere 14.2
1833 Male, age 53, unknown 14.0
2219 Male, age 76, both hemispheres 12.9
1870 Female, age 42, unknown 11.4
Dorsal raphe nucleus
nTPM: 16.1
2047 Male, age 72, unknown 17.6
2298 Female, age 72, unknown 17.3
2750 Male, age 76, both hemispheres 16.4
2016 Female, age 72, unknown 15.6
1828 Male, age 53, unknown 13.7
Inferior colliculus
nTPM: 12.3
1890 Male, age 53, unknown 13.7
1848 Female, age 42, unknown 13.1
2097 Female, age 72, unknown 13.1
2849 Male, age 72, unknown 9.3
Median raphe nucleus
nTPM: 15.5
2220 Male, age 76, midline 15.5
Periaquaductal grey, anterior
nTPM: 16.5
2502 Female, age 75, unknown 16.7
1795 Male, age 51, unknown 16.5
1947 Male, age 18, unknown 16.2
Periaquaductal grey, dorsal
nTPM: 14.0
2464 Female, age 72, unknown 16.7
1840 Male, age 53, unknown 14.8
1831 Male, age 72, unknown 14.1
2850 Male, age 76, both hemispheres 10.6
Periaquaductal grey, lateral
nTPM: 13.4
2053 Male, age 18, unknown 16.6
2140 Male, age 76, both hemispheres 12.5
2272 Male, age 74, both hemispheres 11.3
Pretectal area
nTPM: 16.9
2007 Male, age 72, unknown 21.7
1944 Female, age 72, unknown 18.2
2667 Female, age 75, unknown 18.1
1817 Female, age 42, unknown 17.3
1815 Male, age 53, unknown 16.9
1816 Male, age 51, unknown 16.8
2273 Male, age 74, both hemispheres 16.5
2407 Male, age 75, both hemispheres 16.3
2825 Male, age 18, unknown 15.4
2224 Female, age 72, unknown 15.3
2316 Male, age 76, right hemisphere 13.1
Red nucleus
nTPM: 16.5
2588 Male, age 74, left hemisphere 19.2
2769 Male, age 72, unknown 18.7
2503 Female, age 72, unknown 17.6
1821 Female, age 72, unknown 17.3
2725 Female, age 75, unknown 16.7
1904 Male, age 53, unknown 16.4
1954 Female, age 42, unknown 16.3
2227 Male, age 72, unknown 16.3
2823 Male, age 76, right hemisphere 16.1
2584 Male, age 75, left hemisphere 15.1
1865 Male, age 51, unknown 14.6
2785 Male, age 18, unknown 13.7
Substantia nigra
nTPM: 16.5
1916 Female, age 42, unknown 24.3
1851 Male, age 51, unknown 24.2
2665 Male, age 74, both hemispheres 19.7
1889 Female, age 72, unknown 16.8
2241 Male, age 72, unknown 15.5
2699 Male, age 18, unknown 14.3
1941 Male, age 53, unknown 14.0
2590 Female, age 75, unknown 13.3
2409 Female, age 72, unknown 11.5
2583 Male, age 75, right hemisphere 11.2
Superior colliculus
nTPM: 15.0
1895 Male, age 76, right hemisphere 21.1
1796 Male, age 53, unknown 18.0
2087 Female, age 72, unknown 17.4
2261 Male, age 18, unknown 16.7
2668 Female, age 75, unknown 15.8
1839 Male, age 51, unknown 12.9
2587 Male, age 74, left hemisphere 12.5
2664 Male, age 75, both hemispheres 12.4
1913 Female, age 42, unknown 11.4
1995 Male, age 72, unknown 11.4
Ventral tegmental area
nTPM: 16.4
2410 Female, age 72, unknown 25.4
1915 Female, age 42, unknown 16.0
2021 Male, age 53, unknown 15.6
2218 Male, age 76, both hemispheres 15.2
1942 Male, age 51, unknown 13.6
2223 Female, age 72, unknown 12.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.5
Samples: 139

Max nTPM: 41.5
Min nTPM: 10.9
Std nTPM: 5.9
Median nTPM: 21.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 41.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 38.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 37.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 35.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 35.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 35.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 34.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 34.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 33.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 32.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 31.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.0
FF:10158-103A5 76 years, female 42.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.3
Samples: 4

Max nTPM: 43.5
Min nTPM: 17.6
Sample A Female 43.5
Sample B Female 24.0
Sample C Male 31.9
Sample D Male 17.6
Midbrain
nTPM: 29.9
Samples: 4

Max nTPM: 35.9
Min nTPM: 25.9
Sample A Female 35.9
Sample B Female 26.0
Sample C Male 31.8
Sample D Male 25.9
Periaqueductal gray
nTPM: 22.9
Samples: 3

Max nTPM: 29.3
Min nTPM: 19.4
Sample B Female 19.9
Sample C Male 29.3
Sample D Male 19.4
Superior colliculi
nTPM: 34.5
Samples: 4

Max nTPM: 45.0
Min nTPM: 24.5
Sample A Female 36.0
Sample B Female 32.6
Sample C Male 45.0
Sample D Male 24.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 8.7
Min nTPM: 7.7
Sample A Male 8.2
Sample B Male 8.7
Sample C Female 7.7
Sample D Female 8.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70546215 Antisense, RP_050623_03_G06, Mouse strain C57BL/6J (56 days, male) 0.2

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