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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COX4I1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
495.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2046.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1601.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1331.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1325.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1130.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1105.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1099.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1093.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1032.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1028.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1017.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1016.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1014.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
989.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
987.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
985.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
978.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
972.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
936.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
936.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
933.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
918.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
907.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
884.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
870.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
821.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
820.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
808.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
798.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
798.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
784.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
774.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
758.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
754.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
741.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
730.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
730.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
723.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
722.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
718.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
712.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
708.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
703.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
702.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
701.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
697.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
696.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
695.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
692.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
689.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
687.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
685.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
684.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
680.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
679.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
678.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
662.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
662.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
661.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
660.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
656.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
652.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
651.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
648.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
642.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
640.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
639.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
639.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
638.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
637.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
636.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
631.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
625.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
625.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
624.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
623.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
617.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
617.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
612.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
610.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
606.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
605.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
604.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
603.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
603.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
602.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
602.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
601.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
596.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
595.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
595.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
591.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
583.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
583.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
580.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
578.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
574.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
573.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
571.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
571.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
570.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
569.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
568.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
567.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
566.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
566.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
564.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
562.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
561.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
558.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
550.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
549.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
549.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
547.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
546.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
546.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
546.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
545.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
544.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
540.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
540.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
539.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
539.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
538.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
532.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
526.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
526.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
524.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
523.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
519.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
519.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
516.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
514.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
514.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
514.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
512.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
510.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
510.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
510.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
508.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
507.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
507.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
507.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
506.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
503.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
503.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
502.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
500.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
499.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
498.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
497.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
497.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
496.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
496.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
494.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
490.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
488.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
488.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
486.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
483.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
482.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
482.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
480.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
475.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
471.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
469.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
469.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
467.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
467.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
465.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
464.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
464.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
461.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
461.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
459.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
459.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
458.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
458.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
458.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
456.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
454.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
447.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
447.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
446.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
445.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
445.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
443.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
442.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
442.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
442.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
440.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
440.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
438.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
437.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
437.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
436.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
436.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
435.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
435.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
434.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
432.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
431.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
428.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
426.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
422.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
421.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
420.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
419.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
416.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
414.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
413.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
412.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
411.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
407.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
406.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
406.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
400.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
399.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
397.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
396.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
396.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
395.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
395.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
395.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
394.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
393.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
393.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
393.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
392.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
390.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
389.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
388.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
388.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
388.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
387.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
387.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
386.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
386.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
386.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
385.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
383.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
383.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
383.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
381.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
380.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
379.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
378.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
377.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
376.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
375.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
374.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
371.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
369.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
368.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
367.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
366.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
364.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
361.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
360.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
360.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
357.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
356.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
354.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
353.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
350.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
350.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
350.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
349.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
349.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
345.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
341.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
341.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
341.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
340.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
339.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
338.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
337.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
336.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
335.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
333.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
331.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
330.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
327.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
327.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
324.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
324.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
322.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
322.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
322.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
320.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
319.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
319.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
318.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
317.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
316.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
316.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
315.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
314.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
311.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
311.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
306.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
306.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
306.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
305.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
304.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
303.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
302.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
300.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
299.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
295.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
291.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
285.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
284.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
283.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
282.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
280.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
277.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
276.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
276.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
274.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
274.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
273.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
271.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
271.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
270.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
270.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
269.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
269.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
268.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
267.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
267.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
267.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
266.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
264.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
262.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
262.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
260.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
258.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
257.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
255.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
253.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
251.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
250.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
249.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
249.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
238.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
237.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
237.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
233.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
233.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
226.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
220.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
219.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
218.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
213.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
212.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
210.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
207.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
206.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
200.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
191.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COX4I1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
326.1
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
1296.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
955.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
908.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
904.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
847.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
839.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
755.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
712.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
705.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
692.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
640.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
636.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
621.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
618.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
576.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
574.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
570.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
561.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
558.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
551.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
551.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
544.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
541.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
532.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
525.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
519.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
518.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
505.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
504.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
486.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
480.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
470.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
469.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
464.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
463.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
440.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
439.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
437.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
436.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
434.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
433.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
431.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
425.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
425.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
422.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
416.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
408.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
400.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
393.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
393.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
389.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
388.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
382.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
381.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
380.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
376.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
376.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
374.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
372.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
369.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
367.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
361.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
360.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
351.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
348.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
347.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
347.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
347.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
345.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
344.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
344.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
344.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
340.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
339.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
338.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
338.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
335.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
335.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
334.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
332.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
331.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
327.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
326.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
325.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
323.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
323.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
321.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
321.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
316.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
316.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
315.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
315.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
314.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
314.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
313.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
313.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
312.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
311.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
311.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
310.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
308.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
307.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
301.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
300.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
299.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
298.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
298.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
298.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
297.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
297.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
296.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
296.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
294.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
293.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
293.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
292.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
292.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
291.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
290.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
290.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
289.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
288.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
286.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
286.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
284.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
282.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
282.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
280.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
279.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
278.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
274.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
274.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
272.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
270.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
270.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
268.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
268.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
267.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
267.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
266.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
266.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
265.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
264.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
261.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
261.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
260.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
259.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
258.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
255.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
255.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
255.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
252.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
252.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
251.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
248.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
247.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
246.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
245.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
243.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
243.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
241.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
239.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
238.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
237.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
236.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
235.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
234.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
227.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
227.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
227.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
226.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
226.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
225.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
223.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
222.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
222.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
221.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
220.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
220.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
218.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
216.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
215.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
215.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
212.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
210.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
210.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
210.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
209.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
206.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
205.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
204.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
202.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
198.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
195.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
193.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
191.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
191.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
190.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
189.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
184.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
182.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
175.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
174.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
174.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
174.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
170.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
168.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
165.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
165.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
165.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
164.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
164.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
163.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
162.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
159.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
158.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
158.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
155.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
155.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
154.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
145.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
139.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
138.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
131.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
122.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
118.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
115.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
113.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
112.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
105.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
88.9
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LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.1
227
Tumor
1.0
571
Tumor
0.9
745
Tumor
0.8
981
Tumor
0.8
944
Normal
0.8
713
Tumor
0.8
824
Normal
0.8
514
Normal
0.8
484
Normal
0.7
698
Normal
0.7
868
Normal
0.7
912
Normal
0.7
915
Tumor
0.7
964
Normal
0.7
958
Normal
0.7
534
Normal
0.7
448
Normal
0.7
862
Normal
0.7
231
Tumor
0.6
557
Tumor
0.6
1046
Normal
0.6
482
Normal
0.6
616
Normal
0.6
1032
Normal
0.6
416
Normal
0.6
926
Normal
0.6
728
Normal
0.6
1014
Normal
0.6
328
Normal
0.6
472
Normal
0.6
356
Normal
0.6
867
Tumor
0.6
922
Normal
0.6
864
Normal
0.6
918
Normal
0.6
866
Normal
0.6
714
Normal
0.6
695
Tumor
0.6
723
Tumor
0.6
938
Normal
0.6
916
Normal
0.6
636
Normal
0.6
411
Tumor
0.6
1025
Tumor
0.6
818
Normal
0.6
1026
Normal
0.6
516
Normal
0.5
882
Normal
0.5
982
Normal
0.5
955
Tumor
0.5
546
Normal
0.5
327
Tumor
0.5
1042
Normal
0.5
696
Normal
0.5
462
Normal
0.5
858
Normal
0.5
364
Normal
0.5
528
Normal
0.5
412
Normal
0.5
554
Normal
0.5
722
Normal
0.5
738
Normal
0.5
1022
Normal
0.5
984
Normal
0.5
564
Normal
0.5
924
Normal
0.5
488
Normal
0.5
686
Normal
0.5
878
Normal
0.5
816
Normal
0.5
212
Normal
0.5
1028
Normal
0.5
526
Normal
0.5
473
Tumor
0.5
756
Normal
0.5
518
Normal
0.5
494
Normal
0.4
618
Normal
0.4
978
Normal
0.4
952
Normal
0.4
128
Normal
0.4
628
Normal
0.4
746
Normal
0.4
1045
Tumor
0.4
477
Tumor
0.4
572
Normal
0.4
914
Normal
0.4
954
Normal
0.4
483
Tumor
0.4
716
Normal
0.4
742
Normal
0.4
278
Normal
0.4
956
Normal
0.4
474
Normal
0.4
428
Normal
0.4
553
Tumor
0.4
648
Normal
0.4
642
Normal
0.4
1044
Normal
0.4
1013
Tumor
0.4
228
Normal
0.4
436
Normal
0.4
196
Normal
0.3
957
Tumor
0.3
284
Normal
0.3
641
Tumor
0.3
968
Normal
0.3
478
Normal
0.3
1016
Normal
0.3
162
Normal
0.3
464
Normal
0.3
911
Tumor
0.3
148
Normal
0.3
172
Normal
0.3
852
Normal
0.3
286
Normal
0.3
537
Tumor
0.3
778
Normal
0.3
466
Normal
0.3
923
Tumor
0.3
513
Tumor
0.3
1031
Tumor
0.3
976
Normal
0.3
786
Normal
0.3
214
Normal
0.3
697
Tumor
0.3
432
Normal
0.3
874
Normal
0.3
261
Tumor
0.3
524
Normal
0.3
222
Normal
0.3
1015
Tumor
0.3
861
Tumor
0.3
314
Normal
0.3
558
Normal
0.3
132
Normal
0.3
664
Normal
0.3
358
Normal
0.3
525
Tumor
0.3
741
Tumor
0.3
362
Normal
0.2
568
Normal
0.2
258
Normal
0.2
426
Normal
0.2
424
Normal
0.2
538
Normal
0.2
685
Tumor
0.2
446
Normal
0.2
966
Normal
0.2
114
Normal
0.2
884
Normal
0.2
171
Tumor
0.2
224
Normal
0.2
272
Normal
0.2
312
Normal
0.2
414
Normal
0.2
662
Normal
0.2
481
Tumor
0.2
376
Normal
0.2
388
Normal
0.2
937
Tumor
0.2
666
Normal
0.2
422
Normal
0.2
344
Normal
0.2
232
Normal
0.2
396
Normal
0.2
823
Tumor
0.2
298
Normal
0.2
953
Tumor
0.1
423
Tumor
0.1
394
Normal
0.1
342
Normal
0.1
111
Normal
0.1
136
Normal
0.1
617
Tumor
0.1
785
Tumor
0.1
627
Tumor
0.1
392
Normal
0.1
221
Tumor
0.1
777
Tumor
0.1
857
Tumor
0.1
145
Tumor
0.1
393
Tumor
0.1
354
Normal
0.1
126
Normal
0.1
456
Normal
0.1
142
Normal
0.1
366
Normal
0.1
188
Normal
0.1
755
Tumor
0.1
138
Normal
0.1
113
Tumor
0.1
951
Tumor
0.1
715
Tumor
0.0
262
Normal
0.0
865
Tumor
0.0
536
Normal
0.0
468
Normal
0.0
491
Tumor
0.0
268
Normal
0.0
873
Tumor
0.0
363
Tumor
0.0
352
Normal
0.0
498
Normal
0.0
127
Tumor
0.0
492
Normal
0.0
635
Tumor
0.0
574
Normal
0.0
332
Normal
0.0
186
Normal
0.0
493
Tumor
0.0
523
Tumor
0.0
744
Normal
0.0
452
Normal
0.0
191
Tumor
0.0
341
Tumor
0.0
218
Normal
0.0
451
Tumor
0.0
487
Tumor
0.0
434
Normal
-0.1
386
Normal
-0.1
223
Tumor
-0.1
146
Normal
-0.1
672
Normal
-0.1
361
Tumor
-0.1
415
Tumor
-0.1
647
Tumor
-0.1
533
Tumor
-0.1
444
Normal
-0.1
925
Tumor
-0.1
384
Normal
-0.2
663
Tumor
-0.2
355
Tumor
-0.2
913
Tumor
-0.2
257
Tumor
-0.2
433
Tumor
-0.2
977
Tumor
-0.2
267
Tumor
-0.2
863
Tumor
-0.2
517
Tumor
-0.2
1027
Tumor
-0.2
967
Tumor
-0.2
192
Normal
-0.2
851
Tumor
-0.3
431
Tumor
-0.3
975
Tumor
-0.3
353
Tumor
-0.3
461
Tumor
-0.3
567
Tumor
-0.3
124
Normal
-0.3
721
Tumor
-0.3
368
Normal
-0.3
965
Tumor
-0.3
817
Tumor
-0.3
1021
Tumor
-0.3
963
Tumor
-0.3
195
Tumor
-0.3
435
Tumor
-0.3
217
Tumor
-0.3
161
Tumor
-0.3
465
Tumor
-0.3
497
Tumor
-0.3
447
Tumor
-0.3
112
Tumor
-0.3
471
Tumor
-0.3
467
Tumor
-0.3
285
Tumor
-0.3
187
Tumor
-0.4
1043
Tumor
-0.4
881
Tumor
-0.4
665
Tumor
-0.4
277
Tumor
-0.4
185
Tumor
-0.4
213
Tumor
-0.4
515
Tumor
-0.4
727
Tumor
-0.4
147
Tumor
-0.4
563
Tumor
-0.4
743
Tumor
-0.4
943
Tumor
-0.4
313
Tumor
-0.4
917
Tumor
-0.4
527
Tumor
-0.4
983
Tumor
-0.4
535
Tumor
-0.4
357
Tumor
-0.4
137
Tumor
-0.5
135
Tumor
-0.5
545
Tumor
-0.5
387
Tumor
-0.5
815
Tumor
-0.5
615
Tumor
-0.5
427
Tumor
-0.5
737
Tumor
-0.5
883
Tumor
-0.5
311
Tumor
-0.5
573
Tumor
-0.5
814
Normal
-0.5
367
Tumor
-0.6
413
Tumor
-0.6
813
Tumor
-0.6
383
Tumor
-0.6
271
Tumor
-0.6
211
Tumor
-0.6
724
Normal
-0.6
125
Tumor
-0.7
671
Tumor
-0.7
123
Tumor
-0.7
463
Tumor
-0.7
921
Tumor
-0.7
455
Tumor
-0.7
425
Tumor
-0.7
421
Tumor
-0.7
375
Tumor
-0.7
351
Tumor
-0.7
141
Tumor
-0.7
395
Tumor
-0.7
661
Tumor
-0.8
297
Tumor
-0.8
365
Tumor
-0.8
131
Tumor
-0.8
385
Tumor
-0.9
283
Tumor
-0.9
331
Tumor
-0.9
343
Tumor
-0.9
443
Tumor
-0.9
877
Tumor
-0.9
391
Tumor
-1.0
445
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.