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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RBM39 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
78.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RBM39 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
98.5
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
246.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
220.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
219.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
205.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
191.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
190.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
188.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
187.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
184.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
169.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
168.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
167.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
166.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
166.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
164.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
156.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
156.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
155.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
155.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
154.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
153.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
153.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
152.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
149.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
144.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
144.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
143.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
143.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
141.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
140.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
140.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
139.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
138.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
134.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
134.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
133.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
132.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
131.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
131.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
127.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
127.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
123.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
123.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
123.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
122.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
121.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
121.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
121.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
120.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
119.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
117.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
117.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
117.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
117.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
116.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
115.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
115.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
114.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
114.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
113.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
113.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
112.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
112.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
112.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
111.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
111.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
111.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
111.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
110.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
110.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
109.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
108.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
107.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
107.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
107.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
107.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
107.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
106.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
105.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
104.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
104.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
104.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
103.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
103.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
103.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
102.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
102.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
102.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
101.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
101.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
101.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
101.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
101.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
101.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
101.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
100.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
99.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
99.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
99.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
98.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
98.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
97.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
97.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
96.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
96.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
96.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
95.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
95.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
95.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
95.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
94.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
93.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
93.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
92.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
92.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
92.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
90.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
90.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
90.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
89.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
89.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
88.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
88.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
87.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
87.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
87.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
87.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
86.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
86.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
85.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
85.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
85.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
85.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
85.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
84.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
84.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
84.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
84.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
84.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
83.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
83.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
83.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
83.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
83.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
83.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
82.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
82.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
81.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
81.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
81.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
81.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
80.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
80.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
80.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
79.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
79.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
79.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
78.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
77.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
77.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
76.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
76.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
76.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
75.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
75.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
75.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
75.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
74.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
74.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
73.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
73.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
73.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
72.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
72.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
72.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
72.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
72.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
72.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
71.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
71.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
70.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
70.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
70.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
70.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
69.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
69.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
69.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
69.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
69.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
69.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
69.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
68.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
67.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
67.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
67.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
67.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
67.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
67.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
67.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
66.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
64.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
64.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
64.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
64.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
63.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
63.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
63.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
62.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
61.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
61.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
61.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
60.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
60.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
59.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
58.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
58.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
56.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
56.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
55.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
52.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
50.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
48.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
48.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
45.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
44.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
42.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
40.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
38.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
33.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
32.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
0.8
411
Tumor
0.7
351
Tumor
0.6
385
Tumor
0.6
131
Tumor
0.6
877
Tumor
0.6
983
Tumor
0.5
331
Tumor
0.5
313
Tumor
0.5
727
Tumor
0.5
661
Tumor
0.5
123
Tumor
0.5
967
Tumor
0.5
425
Tumor
0.5
367
Tumor
0.5
523
Tumor
0.4
537
Tumor
0.4
865
Tumor
0.4
965
Tumor
0.4
463
Tumor
0.4
285
Tumor
0.4
211
Tumor
0.4
413
Tumor
0.4
497
Tumor
0.4
647
Tumor
0.3
695
Tumor
0.3
443
Tumor
0.3
161
Tumor
0.3
355
Tumor
0.3
567
Tumor
0.3
431
Tumor
0.3
737
Tumor
0.3
545
Tumor
0.3
227
Tumor
0.3
921
Tumor
0.3
813
Tumor
0.3
671
Tumor
0.3
977
Tumor
0.3
271
Tumor
0.3
724
Normal
0.3
221
Tumor
0.3
391
Tumor
0.3
267
Tumor
0.3
357
Tumor
0.3
571
Tumor
0.3
277
Tumor
0.3
881
Tumor
0.3
112
Tumor
0.3
1031
Tumor
0.3
814
Normal
0.3
975
Tumor
0.2
527
Tumor
0.2
815
Tumor
0.2
685
Tumor
0.2
665
Tumor
0.2
467
Tumor
0.2
663
Tumor
0.2
963
Tumor
0.2
535
Tumor
0.2
171
Tumor
0.2
297
Tumor
0.2
343
Tumor
0.2
1021
Tumor
0.2
471
Tumor
0.2
1013
Tumor
0.2
375
Tumor
0.2
923
Tumor
0.2
943
Tumor
0.2
1025
Tumor
0.2
383
Tumor
0.2
957
Tumor
0.2
465
Tumor
0.2
715
Tumor
0.2
785
Tumor
0.2
533
Tumor
0.2
427
Tumor
0.2
455
Tumor
0.1
185
Tumor
0.1
553
Tumor
0.1
435
Tumor
0.1
817
Tumor
0.1
477
Tumor
0.1
487
Tumor
0.1
641
Tumor
0.1
883
Tumor
0.1
557
Tumor
0.1
283
Tumor
0.1
261
Tumor
0.1
217
Tumor
0.1
937
Tumor
0.1
517
Tumor
0.1
635
Tumor
0.1
393
Tumor
0.1
191
Tumor
0.1
231
Tumor
0.1
213
Tumor
0.1
491
Tumor
0.1
232
Normal
0.1
777
Tumor
0.1
395
Tumor
0.1
135
Tumor
0.1
721
Tumor
0.1
951
Tumor
0.1
125
Tumor
0.1
617
Tumor
0.1
433
Tumor
0.1
473
Tumor
0.1
451
Tumor
0.1
447
Tumor
0.1
341
Tumor
0.1
525
Tumor
0.1
187
Tumor
0.1
483
Tumor
0.0
113
Tumor
0.0
384
Normal
0.0
1041
Tumor
0.0
493
Tumor
0.0
192
Normal
0.0
478
Normal
0.0
445
Tumor
0.0
481
Tumor
0.0
515
Tumor
0.0
352
Normal
0.0
461
Tumor
0.0
563
Tumor
0.0
127
Tumor
0.0
554
Normal
0.0
482
Normal
0.0
513
Tumor
0.0
964
Normal
0.0
141
Tumor
0.0
387
Tumor
0.0
861
Tumor
0.0
148
Normal
0.0
713
Tumor
0.0
147
Tumor
0.0
376
Normal
0.0
188
Normal
0.0
618
Normal
0.0
755
Tumor
0.0
1015
Tumor
0.0
363
Tumor
0.0
574
Normal
0.0
364
Normal
0.0
223
Tumor
0.0
262
Normal
0.0
172
Normal
0.0
878
Normal
0.0
851
Tumor
0.0
186
Normal
0.0
524
Normal
0.0
564
Normal
0.0
286
Normal
0.0
915
Tumor
0.0
444
Normal
0.0
421
Tumor
-0.1
423
Tumor
-0.1
446
Normal
-0.1
328
Normal
-0.1
917
Tumor
-0.1
298
Normal
-0.1
912
Normal
-0.1
361
Tumor
-0.1
882
Normal
-0.1
573
Tumor
-0.1
162
Normal
-0.1
422
Normal
-0.1
412
Normal
-0.1
145
Tumor
-0.1
132
Normal
-0.1
1016
Normal
-0.1
627
Tumor
-0.1
867
Tumor
-0.1
1043
Tumor
-0.1
284
Normal
-0.1
568
Normal
-0.1
953
Tumor
-0.1
344
Normal
-0.1
195
Tumor
-0.1
365
Tumor
-0.1
388
Normal
-0.1
426
Normal
-0.1
534
Normal
-0.1
911
Tumor
-0.1
386
Normal
-0.1
332
Normal
-0.1
368
Normal
-0.1
268
Normal
-0.1
966
Normal
-0.1
396
Normal
-0.1
741
Tumor
-0.1
272
Normal
-0.1
664
Normal
-0.1
976
Normal
-0.1
642
Normal
-0.1
327
Tumor
-0.1
448
Normal
-0.1
698
Normal
-0.1
354
Normal
-0.1
415
Tumor
-0.1
873
Tumor
-0.1
146
Normal
-0.1
672
Normal
-0.1
224
Normal
-0.1
697
Tumor
-0.1
228
Normal
-0.1
538
Normal
-0.1
498
Normal
-0.1
546
Normal
-0.1
366
Normal
-0.1
1027
Tumor
-0.1
311
Tumor
-0.1
744
Normal
-0.1
484
Normal
-0.1
218
Normal
-0.1
258
Normal
-0.1
394
Normal
-0.1
786
Normal
-0.1
353
Tumor
-0.1
137
Tumor
-0.1
863
Tumor
-0.1
462
Normal
-0.1
114
Normal
-0.1
278
Normal
-0.1
492
Normal
-0.1
636
Normal
-0.1
778
Normal
-0.1
488
Normal
-0.1
922
Normal
-0.1
528
Normal
-0.1
432
Normal
-0.1
925
Tumor
-0.1
536
Normal
-0.1
884
Normal
-0.1
416
Normal
-0.1
472
Normal
-0.1
312
Normal
-0.1
1026
Normal
-0.1
136
Normal
-0.1
428
Normal
-0.1
424
Normal
-0.1
314
Normal
-0.1
1045
Tumor
-0.1
756
Normal
-0.1
128
Normal
-0.1
257
Tumor
-0.1
356
Normal
-0.1
436
Normal
-0.1
392
Normal
-0.1
913
Tumor
-0.1
558
Normal
-0.1
362
Normal
-0.1
628
Normal
-0.1
138
Normal
-0.1
968
Normal
-0.1
126
Normal
-0.1
342
Normal
-0.1
1014
Normal
-0.1
944
Normal
-0.1
434
Normal
-0.1
196
Normal
-0.2
823
Tumor
-0.2
212
Normal
-0.2
142
Normal
-0.2
572
Normal
-0.2
926
Normal
-0.2
954
Normal
-0.2
981
Tumor
-0.2
615
Tumor
-0.2
984
Normal
-0.2
666
Normal
-0.2
648
Normal
-0.2
955
Tumor
-0.2
452
Normal
-0.2
938
Normal
-0.2
742
Normal
-0.2
518
Normal
-0.2
464
Normal
-0.2
918
Normal
-0.2
866
Normal
-0.2
474
Normal
-0.2
1028
Normal
-0.2
982
Normal
-0.2
214
Normal
-0.2
516
Normal
-0.2
124
Normal
-0.2
924
Normal
-0.2
824
Normal
-0.2
466
Normal
-0.2
526
Normal
-0.2
858
Normal
-0.2
494
Normal
-0.2
914
Normal
-0.2
468
Normal
-0.2
414
Normal
-0.2
738
Normal
-0.2
222
Normal
-0.2
978
Normal
-0.2
874
Normal
-0.2
1046
Normal
-0.2
662
Normal
-0.2
514
Normal
-0.2
686
Normal
-0.2
616
Normal
-0.2
696
Normal
-0.2
1042
Normal
-0.2
857
Tumor
-0.2
1032
Normal
-0.2
722
Normal
-0.2
916
Normal
-0.2
864
Normal
-0.2
456
Normal
-0.2
958
Normal
-0.2
111
Normal
-0.3
746
Normal
-0.3
1022
Normal
-0.3
862
Normal
-0.3
358
Normal
-0.3
723
Tumor
-0.3
818
Normal
-0.3
728
Normal
-0.3
716
Normal
-0.3
745
Tumor
-0.3
868
Normal
-0.3
956
Normal
-0.3
816
Normal
-0.3
714
Normal
-0.3
952
Normal
-0.4
852
Normal
-0.4
1044
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
