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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HABP4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
40.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
39.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
37.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HABP4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.7
Number of samples
231
Samples
Sample
Description
TPM
DO23529
0 years, male, NA, stage:4, alive, 930 days
39.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
29.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
715
Tumor
2.2
665
Tumor
1.3
537
Tumor
1.0
851
Tumor
0.9
451
Tumor
0.9
915
Tumor
0.8
815
Tumor
0.8
861
Tumor
0.8
965
Tumor
0.7
863
Tumor
0.7
867
Tumor
0.7
513
Tumor
0.7
981
Tumor
0.7
817
Tumor
0.7
557
Tumor
0.6
533
Tumor
0.6
724
Normal
0.6
785
Tumor
0.6
911
Tumor
0.6
413
Tumor
0.6
427
Tumor
0.6
913
Tumor
0.5
1041
Tumor
0.5
187
Tumor
0.5
487
Tumor
0.5
545
Tumor
0.5
535
Tumor
0.5
127
Tumor
0.5
852
Normal
0.4
745
Tumor
0.4
635
Tumor
0.4
975
Tumor
0.4
473
Tumor
0.4
538
Normal
0.4
641
Tumor
0.4
483
Tumor
0.4
285
Tumor
0.4
685
Tumor
0.4
477
Tumor
0.4
553
Tumor
0.4
967
Tumor
0.4
661
Tumor
0.4
351
Tumor
0.3
963
Tumor
0.3
525
Tumor
0.3
327
Tumor
0.3
494
Normal
0.3
421
Tumor
0.3
868
Normal
0.3
937
Tumor
0.3
777
Tumor
0.3
524
Normal
0.3
954
Normal
0.3
493
Tumor
0.3
492
Normal
0.3
478
Normal
0.3
916
Normal
0.3
415
Tumor
0.3
1015
Tumor
0.3
567
Tumor
0.3
516
Normal
0.3
823
Tumor
0.3
355
Tumor
0.3
536
Normal
0.3
455
Tumor
0.2
671
Tumor
0.2
123
Tumor
0.2
923
Tumor
0.2
1031
Tumor
0.2
514
Normal
0.2
741
Tumor
0.2
918
Normal
0.2
395
Tumor
0.2
647
Tumor
0.2
498
Normal
0.2
983
Tumor
0.2
698
Normal
0.2
924
Normal
0.2
444
Normal
0.2
474
Normal
0.2
284
Normal
0.2
955
Tumor
0.2
958
Normal
0.2
448
Normal
0.2
727
Tumor
0.2
261
Tumor
0.2
755
Tumor
0.2
357
Tumor
0.2
463
Tumor
0.2
615
Tumor
0.2
515
Tumor
0.2
968
Normal
0.2
471
Tumor
0.2
517
Tumor
0.2
365
Tumor
0.2
387
Tumor
0.2
978
Normal
0.1
488
Normal
0.1
883
Tumor
0.1
452
Normal
0.1
145
Tumor
0.1
944
Normal
0.1
497
Tumor
0.1
523
Tumor
0.1
228
Normal
0.1
231
Tumor
0.1
943
Tumor
0.1
1021
Tumor
0.1
617
Tumor
0.1
212
Normal
0.1
361
Tumor
0.1
926
Normal
0.1
484
Normal
0.1
422
Normal
0.1
283
Tumor
0.1
922
Normal
0.1
375
Tumor
0.1
367
Tumor
0.1
953
Tumor
0.1
481
Tumor
0.1
376
Normal
0.1
697
Tumor
0.1
546
Normal
0.1
362
Normal
0.1
112
Tumor
0.1
257
Tumor
0.1
925
Tumor
0.1
554
Normal
0.1
857
Tumor
0.1
1028
Normal
0.1
113
Tumor
0.1
268
Normal
0.1
1025
Tumor
0.1
465
Tumor
0.1
728
Normal
0.1
976
Normal
0.1
211
Tumor
0.1
714
Normal
0.1
627
Tumor
0.1
433
Tumor
0.1
461
Tumor
0.1
723
Tumor
0.1
385
Tumor
0.1
864
Normal
0.1
135
Tumor
0.1
526
Normal
0.1
393
Tumor
0.1
696
Normal
0.1
271
Tumor
0.1
424
Normal
0.1
966
Normal
0.1
447
Tumor
0.1
298
Normal
0.1
518
Normal
0.1
468
Normal
0.1
528
Normal
0.1
884
Normal
0.1
426
Normal
0.0
267
Tumor
0.0
224
Normal
0.0
984
Normal
0.0
366
Normal
0.0
952
Normal
0.0
957
Tumor
0.0
866
Normal
0.0
312
Normal
0.0
912
Normal
0.0
858
Normal
0.0
414
Normal
0.0
666
Normal
0.0
191
Tumor
0.0
1026
Normal
0.0
1014
Normal
0.0
464
Normal
0.0
877
Tumor
0.0
527
Tumor
0.0
1044
Normal
0.0
462
Normal
0.0
878
Normal
0.0
311
Tumor
0.0
816
Normal
0.0
131
Tumor
0.0
223
Tumor
0.0
171
Tumor
0.0
873
Tumor
0.0
881
Tumor
0.0
642
Normal
0.0
147
Tumor
0.0
1043
Tumor
0.0
917
Tumor
N/A
232
Normal
0.0
1045
Tumor
0.0
672
Normal
0.0
977
Tumor
0.0
716
Normal
0.0
686
Normal
0.0
874
Normal
0.0
558
Normal
0.0
472
Normal
0.0
391
Tumor
0.0
1032
Normal
0.0
388
Normal
0.0
1016
Normal
0.0
862
Normal
0.0
141
Tumor
0.0
328
Normal
0.0
416
Normal
0.0
818
Normal
0.0
137
Tumor
0.0
882
Normal
0.0
331
Tumor
0.0
722
Normal
0.0
213
Tumor
0.0
744
Normal
0.0
778
Normal
-0.1
482
Normal
-0.1
368
Normal
-0.1
386
Normal
-0.1
956
Normal
-0.1
435
Tumor
-0.1
574
Normal
-0.1
982
Normal
-0.1
278
Normal
-0.1
951
Tumor
-0.1
384
Normal
-0.1
286
Normal
-0.1
616
Normal
-0.1
534
Normal
-0.1
1042
Normal
-0.1
432
Normal
-0.1
456
Normal
-0.1
664
Normal
-0.1
814
Normal
-0.1
628
Normal
-0.1
423
Tumor
-0.1
662
Normal
-0.1
564
Normal
-0.1
332
Normal
-0.1
142
Normal
-0.1
434
Normal
-0.1
425
Tumor
-0.1
161
Tumor
-0.1
363
Tumor
-0.1
364
Normal
-0.1
636
Normal
-0.1
1022
Normal
-0.1
742
Normal
-0.1
356
Normal
-0.1
964
Normal
-0.1
648
Normal
-0.1
297
Tumor
-0.1
314
Normal
-0.1
1046
Normal
-0.1
136
Normal
-0.1
695
Tumor
-0.1
865
Tumor
-0.1
214
Normal
-0.1
914
Normal
-0.1
396
Normal
-0.1
443
Tumor
-0.1
563
Tumor
-0.1
746
Normal
-0.1
467
Tumor
-0.1
938
Normal
-0.1
192
Normal
-0.1
412
Normal
-0.1
921
Tumor
-0.1
114
Normal
-0.1
217
Tumor
-0.1
466
Normal
-0.1
824
Normal
-0.1
221
Tumor
-0.1
738
Normal
-0.1
572
Normal
-0.1
1013
Tumor
-0.2
353
Tumor
-0.2
341
Tumor
-0.2
392
Normal
-0.2
195
Tumor
-0.2
128
Normal
-0.2
185
Tumor
-0.2
272
Normal
-0.2
1027
Tumor
-0.2
431
Tumor
-0.2
446
Normal
-0.2
227
Tumor
-0.2
125
Tumor
-0.2
124
Normal
-0.2
132
Normal
-0.2
258
Normal
-0.2
146
Normal
-0.2
138
Normal
-0.2
737
Tumor
-0.2
568
Normal
-0.2
352
Normal
-0.2
786
Normal
-0.2
126
Normal
-0.2
262
Normal
-0.2
394
Normal
-0.2
188
Normal
-0.2
721
Tumor
-0.2
743
Tumor
-0.2
172
Normal
-0.3
343
Tumor
-0.3
491
Tumor
-0.3
383
Tumor
-0.3
813
Tumor
-0.3
428
Normal
-0.3
436
Normal
-0.3
756
Normal
-0.3
186
Normal
-0.3
573
Tumor
-0.3
313
Tumor
-0.3
342
Normal
-0.3
218
Normal
-0.3
148
Normal
-0.3
277
Tumor
-0.3
663
Tumor
-0.3
618
Normal
-0.3
354
Normal
-0.3
344
Normal
-0.3
111
Normal
-0.4
222
Normal
-0.4
358
Normal
-0.4
196
Normal
-0.4
411
Tumor
-0.4
162
Normal
-0.4
445
Tumor
-0.4
571
Tumor
-0.5
713
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
