MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:285.4 nTPM
HPA Brain:42.0 nTPM
GTEx:285.4 nTPM
FANTOM5:221.0 Scaled Tags Per Million
Pig:267.6 nTPM
Mouse:448.9 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.2
1870 Female, age 42, unknown 38.7
2219 Male, age 76, both hemispheres 37.0
2411 Female, age 72, unknown 34.9
1827 Male, age 72, unknown 34.0
2019 Male, age 18, unknown 29.3
1833 Male, age 53, unknown 28.0
2666 Male, age 74, left hemisphere 27.0
1830 Male, age 51, unknown 26.4
2828 Female, age 72, unknown 23.8
2586 Male, age 75, left hemisphere 22.6
Dorsal raphe nucleus
nTPM: 32.1
1828 Male, age 53, unknown 37.0
2047 Male, age 72, unknown 34.7
2298 Female, age 72, unknown 33.2
2750 Male, age 76, both hemispheres 33.1
2016 Female, age 72, unknown 22.5
Inferior colliculus
nTPM: 36.7
2849 Male, age 72, unknown 40.9
1890 Male, age 53, unknown 37.9
2097 Female, age 72, unknown 35.9
1848 Female, age 42, unknown 32.2
Median raphe nucleus
nTPM: 42.0
2220 Male, age 76, midline 42.0
Periaquaductal grey, anterior
nTPM: 33.3
2502 Female, age 75, unknown 35.3
1795 Male, age 51, unknown 34.1
1947 Male, age 18, unknown 30.3
Periaquaductal grey, dorsal
nTPM: 30.3
2850 Male, age 76, both hemispheres 35.2
1840 Male, age 53, unknown 34.4
1831 Male, age 72, unknown 26.9
2464 Female, age 72, unknown 24.9
Periaquaductal grey, lateral
nTPM: 29.6
2140 Male, age 76, both hemispheres 31.4
2272 Male, age 74, both hemispheres 30.4
2053 Male, age 18, unknown 27.1
Pretectal area
nTPM: 34.8
2007 Male, age 72, unknown 43.1
1816 Male, age 51, unknown 41.8
1944 Female, age 72, unknown 41.1
1817 Female, age 42, unknown 39.5
2667 Female, age 75, unknown 38.5
2224 Female, age 72, unknown 33.9
1815 Male, age 53, unknown 31.3
2825 Male, age 18, unknown 31.3
2407 Male, age 75, both hemispheres 30.7
2273 Male, age 74, both hemispheres 27.8
2316 Male, age 76, right hemisphere 23.7
Red nucleus
nTPM: 31.7
2725 Female, age 75, unknown 39.8
1821 Female, age 72, unknown 37.3
2785 Male, age 18, unknown 32.7
1954 Female, age 42, unknown 32.5
1865 Male, age 51, unknown 31.9
2588 Male, age 74, left hemisphere 31.9
2227 Male, age 72, unknown 31.4
2769 Male, age 72, unknown 30.3
2503 Female, age 72, unknown 29.0
2823 Male, age 76, right hemisphere 28.3
2584 Male, age 75, left hemisphere 28.1
1904 Male, age 53, unknown 27.3
Substantia nigra
nTPM: 35.7
1916 Female, age 42, unknown 48.5
1889 Female, age 72, unknown 45.6
2699 Male, age 18, unknown 41.8
1851 Male, age 51, unknown 39.1
1941 Male, age 53, unknown 38.2
2665 Male, age 74, both hemispheres 33.2
2409 Female, age 72, unknown 32.6
2241 Male, age 72, unknown 31.2
2590 Female, age 75, unknown 26.0
2583 Male, age 75, right hemisphere 21.0
Superior colliculus
nTPM: 29.9
1895 Male, age 76, right hemisphere 39.8
2587 Male, age 74, left hemisphere 36.0
1796 Male, age 53, unknown 33.7
2087 Female, age 72, unknown 32.5
2261 Male, age 18, unknown 31.2
1913 Female, age 42, unknown 26.7
2668 Female, age 75, unknown 25.9
2664 Male, age 75, both hemispheres 25.7
1839 Male, age 51, unknown 25.6
1995 Male, age 72, unknown 21.6
Ventral tegmental area
nTPM: 35.8
2218 Male, age 76, both hemispheres 42.7
2410 Female, age 72, unknown 39.8
1915 Female, age 42, unknown 38.0
2223 Female, age 72, unknown 35.6
1942 Male, age 51, unknown 32.0
2021 Male, age 53, unknown 27.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 285.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 285.4
Samples: 139

Max nTPM: 602.3
Min nTPM: 130.2
Std nTPM: 101.1
Median nTPM: 260.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 602.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 596.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 575.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 562.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 512.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 462.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 458.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 451.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 450.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 449.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 449.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 221.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 221.0
FF:10158-103A5 76 years, female 221.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 267.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 255.9
Samples: 4

Max nTPM: 408.3
Min nTPM: 135.2
Sample A Female 408.3
Sample B Female 205.9
Sample C Male 274.1
Sample D Male 135.2
Midbrain
nTPM: 238.1
Samples: 4

Max nTPM: 260.7
Min nTPM: 213.2
Sample A Female 213.2
Sample B Female 233.3
Sample C Male 260.7
Sample D Male 245.3
Periaqueductal gray
nTPM: 179.6
Samples: 3

Max nTPM: 209.7
Min nTPM: 154.7
Sample B Female 174.3
Sample C Male 209.7
Sample D Male 154.7
Superior colliculi
nTPM: 267.6
Samples: 4

Max nTPM: 328.2
Min nTPM: 206.5
Sample A Female 318.5
Sample B Female 217.0
Sample C Male 328.2
Sample D Male 206.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 448.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 448.9
Samples: 4

Max nTPM: 501.3
Min nTPM: 403.4
Sample A Male 501.3
Sample B Male 423.3
Sample C Female 403.4
Sample D Female 467.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
75774682 Antisense, RP_060530_01_D07, Mouse strain C57BL/6J (56 days, male) 10.9
67978746 Antisense, RP_040923_01_G06, Mouse strain C57BL/6J (56 days, male) 7.4

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