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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIM28 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
104.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
698.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
462.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
444.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
400.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
374.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
334.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
332.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
330.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
320.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
296.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
293.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
286.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
270.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
269.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
262.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
251.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
242.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
241.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
239.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
229.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
218.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
214.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
212.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
211.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
199.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
198.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
197.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
191.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
190.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
187.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
185.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
185.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
183.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
183.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
180.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
179.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
176.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
175.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
174.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
171.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
170.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
169.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
167.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
166.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
165.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
165.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
164.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
163.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
162.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
159.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
159.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
157.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
157.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
156.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
153.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
151.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
150.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
150.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
146.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
145.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
145.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
145.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
143.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
143.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
142.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
142.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
141.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
141.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
140.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
140.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
138.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
136.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
136.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
135.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
135.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
135.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
133.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
132.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
131.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
131.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
131.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
128.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
127.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
127.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
126.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
126.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
125.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
125.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
125.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
124.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
123.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
123.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
123.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
122.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
121.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
119.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
119.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
118.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
118.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
117.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
117.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
117.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
116.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
116.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
116.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
115.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
113.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
113.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
113.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
113.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
112.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
112.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
111.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
110.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
110.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
109.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
109.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
108.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
108.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
107.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
107.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
106.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
106.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
105.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
104.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
104.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
103.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
103.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
103.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
103.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
103.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
102.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
102.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
101.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
100.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
100.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
100.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
99.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
99.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
98.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
98.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
98.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
97.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
97.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
96.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
95.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
95.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
95.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
95.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
95.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
94.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
94.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
93.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
93.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
92.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
92.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
91.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
91.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
91.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
90.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
90.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
89.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
89.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
89.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
89.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
88.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
88.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
88.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
88.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
87.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
87.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
87.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
87.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
86.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
86.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
86.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
86.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
86.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
85.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
85.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
85.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
84.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
84.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
84.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
84.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
83.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
83.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
83.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
83.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
83.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
83.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
83.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
83.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
82.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
81.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
81.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
81.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
81.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
80.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
80.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
80.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
80.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
80.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
79.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
79.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
79.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
78.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
78.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
78.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
78.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
77.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
77.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
76.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
76.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
76.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
76.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
75.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
75.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
75.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
74.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
74.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
74.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
74.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
73.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
73.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
73.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
73.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
71.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
71.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
71.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
71.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
71.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
71.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
71.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
70.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
70.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
70.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
70.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
70.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
69.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
69.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
69.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
69.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
69.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
69.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
68.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
68.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
68.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
67.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
67.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
67.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
67.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
66.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
66.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
66.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
66.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
66.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
66.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
65.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
65.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
65.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
65.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
65.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
64.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
64.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
64.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
64.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
63.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
63.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
63.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
62.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
62.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
62.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
62.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
61.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
61.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
61.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
61.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
60.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
60.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
60.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
60.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
60.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
60.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
60.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
59.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
59.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
59.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
59.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
59.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
58.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
58.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
58.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
58.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
57.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
57.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
57.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
57.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
57.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
57.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
57.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
57.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
56.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
56.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
56.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
56.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
55.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
54.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
54.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
53.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
52.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
52.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
51.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
51.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
51.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
51.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
51.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
51.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
51.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
50.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
50.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
50.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
49.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
48.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
46.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
46.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
45.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
45.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
44.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
43.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
42.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
42.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
42.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
41.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
41.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
41.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
40.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
40.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
39.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
38.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
38.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
35.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
34.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
33.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
33.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
32.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
32.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
31.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
31.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
30.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
29.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
25.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIM28 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.4
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
229.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
193.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
184.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
183.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
168.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
136.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
127.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
122.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
121.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
118.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
118.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
118.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
117.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
116.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
115.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
114.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
106.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
106.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
105.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
102.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
97.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
95.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
93.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
92.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
90.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
90.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
89.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
89.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
86.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
86.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
86.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
85.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
84.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
84.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
81.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
78.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
76.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
74.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
74.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
74.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
73.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
72.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
72.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
72.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
70.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
70.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
68.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
68.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
66.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
66.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
66.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
65.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
65.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
65.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
65.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
64.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
63.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
63.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
62.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
62.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
61.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
61.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
61.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
59.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
59.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
58.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
58.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
58.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
57.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
57.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
57.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
57.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
57.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
56.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
56.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
56.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
56.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
55.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
55.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
55.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
55.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
55.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
54.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
54.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
53.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
53.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
53.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
53.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
52.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
52.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
51.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
51.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
51.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
51.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
51.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
50.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
50.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
50.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
50.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
50.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
49.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
48.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
48.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
48.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
48.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
48.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
48.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
47.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
47.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
47.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
46.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
46.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
46.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
45.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
45.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
45.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
45.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
45.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
45.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
45.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
45.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
45.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
45.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
44.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
44.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
44.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
43.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
42.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
42.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
42.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
42.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
41.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
41.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
41.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
40.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
40.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
40.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
40.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
39.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
39.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
39.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
38.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
38.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
38.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
38.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
37.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
37.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
37.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
37.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
36.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
36.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
36.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
36.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
36.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
36.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
36.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
35.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
35.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
34.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
34.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
34.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
33.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
33.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
33.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
33.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
33.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
33.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
33.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
32.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
31.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
31.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
31.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
30.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
30.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
29.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
28.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
28.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
28.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
27.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
2.2
983
Tumor
1.4
661
Tumor
1.3
951
Tumor
1.3
1025
Tumor
1.3
517
Tumor
1.3
967
Tumor
1.3
131
Tumor
1.2
425
Tumor
1.1
497
Tumor
1.1
285
Tumor
1.1
473
Tumor
1.0
567
Tumor
1.0
817
Tumor
1.0
877
Tumor
1.0
331
Tumor
1.0
865
Tumor
1.0
351
Tumor
0.9
921
Tumor
0.9
413
Tumor
0.8
385
Tumor
0.8
1021
Tumor
0.7
975
Tumor
0.7
545
Tumor
0.7
881
Tumor
0.7
277
Tumor
0.7
463
Tumor
0.7
297
Tumor
0.6
695
Tumor
0.6
355
Tumor
0.6
411
Tumor
0.6
211
Tumor
0.6
671
Tumor
0.6
917
Tumor
0.6
1031
Tumor
0.6
367
Tumor
0.5
963
Tumor
0.5
427
Tumor
0.5
112
Tumor
0.5
813
Tumor
0.5
283
Tumor
0.5
363
Tumor
0.5
431
Tumor
0.5
391
Tumor
0.5
737
Tumor
0.5
447
Tumor
0.4
451
Tumor
0.4
393
Tumor
0.4
977
Tumor
0.4
523
Tumor
0.4
1013
Tumor
0.4
213
Tumor
0.4
647
Tumor
0.4
387
Tumor
0.4
715
Tumor
0.4
573
Tumor
0.4
341
Tumor
0.4
271
Tumor
0.4
883
Tumor
0.4
467
Tumor
0.4
161
Tumor
0.3
815
Tumor
0.3
727
Tumor
0.3
641
Tumor
0.3
635
Tumor
0.3
375
Tumor
0.3
851
Tumor
0.3
147
Tumor
0.3
465
Tumor
0.3
383
Tumor
0.3
433
Tumor
0.3
221
Tumor
0.3
663
Tumor
0.3
965
Tumor
0.3
445
Tumor
0.3
814
Normal
0.3
227
Tumor
0.3
171
Tumor
0.2
483
Tumor
0.2
533
Tumor
0.2
923
Tumor
0.2
357
Tumor
0.2
435
Tumor
0.2
617
Tumor
0.2
231
Tumor
0.2
493
Tumor
0.2
535
Tumor
0.2
537
Tumor
0.2
525
Tumor
0.2
943
Tumor
0.2
697
Tumor
0.2
455
Tumor
0.2
267
Tumor
0.1
415
Tumor
0.1
957
Tumor
0.1
571
Tumor
0.1
515
Tumor
0.1
1043
Tumor
0.1
471
Tumor
0.1
125
Tumor
0.1
744
Normal
0.1
557
Tumor
0.1
113
Tumor
0.1
491
Tumor
0.1
141
Tumor
0.1
492
Normal
0.1
724
Normal
0.1
713
Tumor
0.1
444
Normal
0.1
498
Normal
0.1
191
Tumor
0.1
937
Tumor
0.1
361
Tumor
0.1
553
Tumor
0.1
217
Tumor
0.0
123
Tumor
0.0
721
Tumor
0.0
823
Tumor
0.0
395
Tumor
0.0
135
Tumor
0.0
421
Tumor
0.0
1041
Tumor
0.0
192
Normal
0.0
343
Tumor
0.0
311
Tumor
0.0
861
Tumor
0.0
478
Normal
0.0
313
Tumor
0.0
527
Tumor
0.0
185
Tumor
0.0
195
Tumor
0.0
536
Normal
0.0
257
Tumor
0.0
916
Normal
-0.1
538
Normal
-0.1
873
Tumor
-0.1
423
Tumor
-0.1
461
Tumor
-0.1
268
Normal
-0.1
524
Normal
-0.1
352
Normal
-0.1
384
Normal
-0.1
878
Normal
-0.1
477
Tumor
-0.1
223
Tumor
-0.1
312
Normal
-0.1
915
Tumor
-0.1
1015
Tumor
-0.1
1032
Normal
-0.1
327
Tumor
-0.1
978
Normal
-0.1
863
Tumor
-0.1
434
Normal
-0.1
685
Tumor
-0.1
984
Normal
-0.1
224
Normal
-0.1
188
Normal
-0.1
468
Normal
-0.1
126
Normal
-0.1
146
Normal
-0.1
857
Tumor
-0.1
953
Tumor
-0.2
386
Normal
-0.2
884
Normal
-0.2
966
Normal
-0.2
955
Tumor
-0.2
563
Tumor
-0.2
672
Normal
-0.2
954
Normal
-0.2
1028
Normal
-0.2
332
Normal
-0.2
686
Normal
-0.2
665
Tumor
-0.2
365
Tumor
-0.2
344
Normal
-0.2
716
Normal
-0.2
723
Tumor
-0.2
443
Tumor
-0.2
362
Normal
-0.2
785
Tumor
-0.2
376
Normal
-0.2
298
Normal
-0.2
127
Tumor
-0.2
145
Tumor
-0.2
513
Tumor
-0.2
284
Normal
-0.2
742
Normal
-0.2
212
Normal
-0.2
368
Normal
-0.2
278
Normal
-0.2
662
Normal
-0.2
874
Normal
-0.2
261
Tumor
-0.2
958
Normal
-0.2
353
Tumor
-0.2
488
Normal
-0.2
464
Normal
-0.2
741
Tumor
-0.2
554
Normal
-0.2
664
Normal
-0.2
456
Normal
-0.2
124
Normal
-0.2
786
Normal
-0.2
516
Normal
-0.2
852
Normal
-0.2
534
Normal
-0.2
938
Normal
-0.2
777
Tumor
-0.2
366
Normal
-0.2
494
Normal
-0.2
342
Normal
-0.3
412
Normal
-0.3
187
Tumor
-0.3
952
Normal
-0.3
918
Normal
-0.3
262
Normal
-0.3
358
Normal
-0.3
968
Normal
-0.3
867
Tumor
-0.3
666
Normal
-0.3
944
Normal
-0.3
926
Normal
-0.3
1042
Normal
-0.3
755
Tumor
-0.3
1022
Normal
-0.3
396
Normal
-0.3
466
Normal
-0.3
738
Normal
-0.3
286
Normal
-0.3
728
Normal
-0.3
546
Normal
-0.3
452
Normal
-0.3
696
Normal
-0.3
142
Normal
-0.3
472
Normal
-0.3
364
Normal
-0.3
138
Normal
-0.3
1014
Normal
-0.3
528
Normal
-0.3
912
Normal
-0.3
745
Tumor
-0.3
778
Normal
-0.3
484
Normal
-0.3
424
Normal
-0.3
1044
Normal
-0.3
148
Normal
-0.3
474
Normal
-0.3
1027
Tumor
-0.3
354
Normal
-0.3
446
Normal
-0.3
1045
Tumor
-0.3
976
Normal
-0.3
816
Normal
-0.3
636
Normal
-0.3
714
Normal
-0.3
956
Normal
-0.3
628
Normal
-0.3
824
Normal
-0.3
136
Normal
-0.3
982
Normal
-0.3
356
Normal
-0.3
866
Normal
-0.3
426
Normal
-0.3
756
Normal
-0.3
422
Normal
-0.3
214
Normal
-0.3
858
Normal
-0.3
526
Normal
-0.3
514
Normal
-0.3
448
Normal
-0.3
574
Normal
-0.3
416
Normal
-0.3
228
Normal
-0.3
392
Normal
-0.3
648
Normal
-0.3
114
Normal
-0.3
272
Normal
-0.3
314
Normal
-0.3
818
Normal
-0.3
428
Normal
-0.3
922
Normal
-0.3
218
Normal
-0.3
722
Normal
-0.3
111
Normal
-0.3
1026
Normal
-0.3
132
Normal
-0.4
128
Normal
-0.4
913
Tumor
-0.4
572
Normal
-0.4
232
Normal
-0.4
258
Normal
-0.4
882
Normal
-0.4
518
Normal
-0.4
568
Normal
-0.4
481
Tumor
-0.4
186
Normal
-0.4
868
Normal
-0.4
196
Normal
-0.4
924
Normal
-0.4
1046
Normal
-0.4
862
Normal
-0.4
328
Normal
-0.4
558
Normal
-0.4
864
Normal
-0.4
746
Normal
-0.4
914
Normal
-0.4
388
Normal
-0.4
1016
Normal
-0.4
698
Normal
-0.4
618
Normal
-0.4
642
Normal
-0.4
925
Tumor
-0.4
564
Normal
-0.4
436
Normal
-0.4
482
Normal
-0.4
414
Normal
-0.4
432
Normal
-0.4
162
Normal
-0.4
394
Normal
-0.4
616
Normal
-0.5
137
Tumor
-0.5
462
Normal
-0.5
964
Normal
-0.5
222
Normal
-0.5
172
Normal
-0.5
627
Tumor
-0.5
981
Tumor
-0.5
911
Tumor
-0.6
615
Tumor
-0.6
487
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
