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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ASS1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
479.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6127.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5254.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4324.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4178.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4013.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3307.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3102.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2926.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2686.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2463.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2117.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1895.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1859.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1816.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1778.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1613.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1483.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1472.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1403.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1370.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1351.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1333.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1314.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1259.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1258.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1258.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1248.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1223.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1216.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1174.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1063.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1052.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1041.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1001.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
948.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
908.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
867.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
857.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
847.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
846.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
814.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
800.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
796.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
748.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
743.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
739.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
724.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
719.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
715.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
688.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
665.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
664.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
657.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
649.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
647.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
633.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
628.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
621.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
613.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
610.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
609.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
605.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
598.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
595.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
588.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
577.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
569.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
568.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
563.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
554.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
536.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
530.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
526.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
521.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
519.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
518.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
513.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
510.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
488.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
487.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
484.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
483.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
482.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
481.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
479.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
476.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
476.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
472.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
470.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
468.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
459.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
457.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
456.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
455.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
452.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
452.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
451.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
449.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
440.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
439.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
431.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
428.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
427.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
425.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
420.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
419.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
418.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
414.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
412.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
411.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
405.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
396.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
391.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
390.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
390.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
389.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
389.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
388.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
387.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
385.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
385.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
385.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
383.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
379.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
376.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
375.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
374.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
374.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
373.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
369.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
367.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
366.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
366.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
363.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
360.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
358.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
357.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
355.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
351.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
351.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
350.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
349.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
347.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
346.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
346.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
346.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
342.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
339.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
339.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
339.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
337.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
336.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
334.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
333.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
332.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
329.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
327.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
326.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
325.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
322.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
322.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
321.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
321.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
321.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
319.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
319.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
319.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
318.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
317.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
317.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
315.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
314.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
311.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
310.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
307.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
307.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
306.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
305.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
304.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
301.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
301.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
300.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
300.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
298.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
297.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
296.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
295.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
294.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
293.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
290.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
288.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
287.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
286.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
285.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
283.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
282.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
280.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
279.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
278.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
275.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
272.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
268.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
266.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
266.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
264.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
263.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
263.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
263.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
261.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
258.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
257.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
257.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
257.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
254.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
254.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
253.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
253.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
252.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
251.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
251.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
250.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
245.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
245.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
241.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
240.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
240.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
240.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
235.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
234.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
233.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
232.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
230.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
228.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
226.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
226.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
226.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
224.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
224.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
224.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
219.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
218.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
217.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
217.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
217.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
216.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
216.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
215.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
214.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
212.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
211.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
211.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
209.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
209.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
207.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
207.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
207.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
206.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
205.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
202.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
199.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
198.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
197.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
197.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
197.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
195.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
194.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
193.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
190.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
188.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
186.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
185.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
185.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
184.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
182.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
181.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
181.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
181.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
180.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
178.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
177.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
176.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
176.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
175.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
173.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
170.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
169.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
169.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
166.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
165.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
165.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
164.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
164.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
164.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
161.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
160.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
159.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
159.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
158.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
158.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
158.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
158.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
157.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
155.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
153.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
153.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
150.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
149.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
148.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
147.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
147.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
147.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
144.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
140.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
140.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
140.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
139.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
138.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
136.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
136.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
136.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
135.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
135.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
134.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
131.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
130.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
130.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
130.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
127.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
127.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
126.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
121.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
120.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
120.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
120.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
118.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
116.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
115.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
112.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
109.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
108.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
108.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
103.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
93.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
90.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
80.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
78.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
77.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
76.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
73.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
72.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
69.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
67.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
60.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
58.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
55.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
52.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
50.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
42.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
31.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ASS1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
342.7
Number of samples
231
Samples
Sample
Description
TPM
DO23550
0 years, male, NA, stage:1, alive, 990 days
2851.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
2193.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
1715.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1711.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1608.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
1349.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
1274.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1233.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
1149.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
1135.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1067.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
988.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
917.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
865.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
829.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
828.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
797.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
763.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
759.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
753.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
744.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
735.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
727.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
720.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
692.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
687.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
685.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
654.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
649.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
644.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
605.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
599.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
594.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
587.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
573.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
573.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
561.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
553.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
522.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
519.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
517.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
514.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
499.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
481.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
466.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
463.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
452.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
435.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
422.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
406.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
405.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
400.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
399.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
398.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
390.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
383.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
380.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
379.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
379.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
375.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
374.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
374.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
371.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
370.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
369.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
369.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
363.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
362.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
360.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
356.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
345.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
342.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
340.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
338.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
335.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
334.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
332.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
331.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
326.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
325.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
324.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
322.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
321.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
318.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
317.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
315.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
311.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
294.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
293.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
288.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
282.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
281.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
279.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
277.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
276.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
274.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
274.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
274.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
272.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
270.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
267.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
267.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
266.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
264.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
262.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
256.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
254.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
254.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
252.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
248.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
246.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
246.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
244.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
242.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
242.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
241.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
240.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
239.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
238.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
236.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
232.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
227.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
227.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
226.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
226.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
219.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
219.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
216.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
216.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
216.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
216.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
215.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
214.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
213.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
211.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
210.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
207.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
207.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
203.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
202.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
197.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
197.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
196.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
195.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
195.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
194.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
192.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
191.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
189.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
189.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
188.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
188.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
187.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
187.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
184.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
182.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
181.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
178.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
176.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
174.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
170.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
168.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
165.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
163.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
163.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
158.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
155.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
150.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
148.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
148.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
148.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
147.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
147.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
145.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
143.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
143.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
143.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
141.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
140.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
139.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
138.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
137.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
135.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
132.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
131.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
131.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
130.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
129.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
128.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
124.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
124.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
122.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
121.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
118.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
117.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
116.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
115.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
114.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
111.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
99.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
97.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
94.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
92.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
91.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
84.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
82.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
80.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
80.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
75.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
75.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
75.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
65.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
64.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
62.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
58.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
55.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
47.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
37.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
33.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
1.7
465
Tumor
1.5
128
Normal
1.4
924
Normal
1.4
342
Normal
1.2
698
Normal
1.1
366
Normal
1.1
196
Normal
1.1
448
Normal
1.1
1044
Normal
1.1
227
Tumor
1.1
568
Normal
1.0
228
Normal
1.0
954
Normal
1.0
132
Normal
1.0
722
Normal
1.0
695
Tumor
1.0
648
Normal
1.0
862
Normal
1.0
298
Normal
1.0
114
Normal
1.0
944
Normal
0.9
742
Normal
0.9
222
Normal
0.9
388
Normal
0.9
546
Normal
0.9
616
Normal
0.9
744
Normal
0.9
344
Normal
0.9
914
Normal
0.9
1014
Normal
0.9
816
Normal
0.9
172
Normal
0.9
356
Normal
0.9
878
Normal
0.9
332
Normal
0.9
1022
Normal
0.9
426
Normal
0.9
982
Normal
0.8
882
Normal
0.8
912
Normal
0.8
824
Normal
0.8
358
Normal
0.8
518
Normal
0.8
278
Normal
0.8
412
Normal
0.8
314
Normal
0.8
484
Normal
0.8
456
Normal
0.8
364
Normal
0.8
564
Normal
0.8
756
Normal
0.8
738
Normal
0.8
728
Normal
0.8
472
Normal
0.7
214
Normal
0.7
436
Normal
0.7
111
Normal
0.7
666
Normal
0.7
628
Normal
0.7
232
Normal
0.7
1032
Normal
0.7
866
Normal
0.7
1046
Normal
0.7
958
Normal
0.7
138
Normal
0.7
723
Tumor
0.7
786
Normal
0.7
554
Normal
0.6
186
Normal
0.6
746
Normal
0.6
818
Normal
0.6
976
Normal
0.6
922
Normal
0.6
938
Normal
0.6
636
Normal
0.6
462
Normal
0.6
864
Normal
0.6
714
Normal
0.6
446
Normal
0.6
468
Normal
0.6
424
Normal
0.6
572
Normal
0.6
428
Normal
0.6
618
Normal
0.6
414
Normal
0.6
286
Normal
0.6
466
Normal
0.6
642
Normal
0.5
376
Normal
0.5
148
Normal
0.5
396
Normal
0.5
258
Normal
0.5
146
Normal
0.5
452
Normal
0.5
272
Normal
0.5
858
Normal
0.5
874
Normal
0.5
136
Normal
0.5
162
Normal
0.5
534
Normal
0.5
394
Normal
0.5
686
Normal
0.5
474
Normal
0.5
328
Normal
0.5
1028
Normal
0.5
716
Normal
0.5
432
Normal
0.5
964
Normal
0.4
352
Normal
0.4
423
Tumor
0.4
464
Normal
0.4
984
Normal
0.4
778
Normal
0.4
966
Normal
0.4
981
Tumor
0.4
494
Normal
0.4
526
Normal
0.4
488
Normal
0.4
1026
Normal
0.4
868
Normal
0.4
956
Normal
0.4
516
Normal
0.4
967
Tumor
0.3
362
Normal
0.3
538
Normal
0.3
1042
Normal
0.3
926
Normal
0.3
112
Tumor
0.3
514
Normal
0.3
574
Normal
0.3
386
Normal
0.3
672
Normal
0.2
218
Normal
0.2
422
Normal
0.2
664
Normal
0.2
662
Normal
0.2
142
Normal
0.2
1016
Normal
0.2
482
Normal
0.2
558
Normal
0.2
852
Normal
0.2
354
Normal
0.2
312
Normal
0.1
478
Normal
0.1
498
Normal
0.1
384
Normal
0.1
284
Normal
0.1
696
Normal
0.1
188
Normal
0.1
126
Normal
0.1
528
Normal
0.1
968
Normal
0.1
918
Normal
0.1
513
Tumor
0.1
212
Normal
0.1
713
Tumor
0.1
368
Normal
0.0
884
Normal
0.0
952
Normal
0.0
978
Normal
-0.1
224
Normal
-0.1
392
Normal
-0.1
416
Normal
-0.1
434
Normal
-0.1
262
Normal
-0.1
124
Normal
-0.2
268
Normal
-0.2
361
Tumor
-0.2
916
Normal
-0.3
192
Normal
-0.3
923
Tumor
-0.3
627
Tumor
-0.3
444
Normal
-0.3
363
Tumor
-0.3
524
Normal
-0.4
217
Tumor
-0.4
492
Normal
-0.4
536
Normal
-0.5
873
Tumor
-0.5
697
Tumor
-0.5
867
Tumor
-0.5
127
Tumor
-0.5
355
Tumor
-0.6
147
Tumor
-0.6
411
Tumor
-0.6
963
Tumor
-0.6
365
Tumor
-0.6
955
Tumor
-0.6
937
Tumor
-0.6
617
Tumor
-0.6
195
Tumor
-0.7
327
Tumor
-0.7
1043
Tumor
-0.7
145
Tumor
-0.7
745
Tumor
-0.7
537
Tumor
-0.7
1027
Tumor
-0.8
727
Tumor
-0.8
721
Tumor
-0.8
447
Tumor
-0.8
113
Tumor
-0.9
435
Tumor
-0.9
953
Tumor
-0.9
857
Tumor
-0.9
615
Tumor
-0.9
741
Tumor
-0.9
515
Tumor
-0.9
755
Tumor
-1.0
481
Tumor
-1.0
915
Tumor
-1.0
427
Tumor
-1.0
353
Tumor
-1.0
357
Tumor
-1.0
125
Tumor
-1.0
257
Tumor
-1.0
851
Tumor
-1.0
517
Tumor
-1.1
957
Tumor
-1.1
785
Tumor
-1.1
823
Tumor
-1.1
141
Tumor
-1.1
415
Tumor
-1.1
567
Tumor
-1.1
487
Tumor
-1.1
943
Tumor
-1.1
863
Tumor
-1.1
191
Tumor
-1.1
477
Tumor
-1.2
185
Tumor
-1.2
413
Tumor
-1.2
1015
Tumor
-1.2
341
Tumor
-1.2
137
Tumor
-1.2
393
Tumor
-1.2
1045
Tumor
-1.2
261
Tumor
-1.2
861
Tumor
-1.2
123
Tumor
-1.2
557
Tumor
-1.2
187
Tumor
-1.2
171
Tumor
-1.2
777
Tumor
-1.2
814
Normal
-1.2
491
Tumor
-1.3
1021
Tumor
-1.3
451
Tumor
-1.3
1013
Tumor
-1.3
221
Tumor
-1.3
983
Tumor
-1.3
911
Tumor
-1.3
917
Tumor
-1.3
277
Tumor
-1.3
563
Tumor
-1.3
313
Tumor
-1.3
685
Tumor
-1.4
267
Tumor
-1.4
461
Tumor
-1.4
223
Tumor
-1.4
421
Tumor
-1.4
523
Tumor
-1.4
161
Tumor
-1.4
1025
Tumor
-1.4
391
Tumor
-1.4
881
Tumor
-1.4
665
Tumor
-1.4
715
Tumor
-1.4
271
Tumor
-1.4
913
Tumor
-1.4
213
Tumor
-1.5
445
Tumor
-1.5
573
Tumor
-1.5
647
Tumor
-1.5
135
Tumor
-1.5
231
Tumor
-1.5
493
Tumor
-1.5
387
Tumor
-1.5
877
Tumor
-1.5
1041
Tumor
-1.5
395
Tumor
-1.5
921
Tumor
-1.5
471
Tumor
-1.5
545
Tumor
-1.5
467
Tumor
-1.5
553
Tumor
-1.5
483
Tumor
-1.5
433
Tumor
-1.6
975
Tumor
-1.6
343
Tumor
-1.6
883
Tumor
-1.6
383
Tumor
-1.7
297
Tumor
-1.7
131
Tumor
-1.7
641
Tumor
-1.7
737
Tumor
-1.7
463
Tumor
-1.7
375
Tumor
-1.7
533
Tumor
-1.7
977
Tumor
-1.7
965
Tumor
-1.7
425
Tumor
-1.7
285
Tumor
-1.7
635
Tumor
-1.8
525
Tumor
-1.8
951
Tumor
-1.8
367
Tumor
-1.8
663
Tumor
-1.8
743
Tumor
-1.8
443
Tumor
-1.8
455
Tumor
-1.8
813
Tumor
-1.8
671
Tumor
-1.8
331
Tumor
-1.8
351
Tumor
-1.8
283
Tumor
-1.9
431
Tumor
-1.9
817
Tumor
-1.9
724
Normal
-1.9
527
Tumor
-1.9
311
Tumor
-1.9
815
Tumor
-1.9
497
Tumor
-2.0
1031
Tumor
-2.0
925
Tumor
-2.0
865
Tumor
-2.0
473
Tumor
-2.0
535
Tumor
-2.3
211
Tumor
-2.3
385
Tumor
-2.4
661
Tumor
-2.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.