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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSP1 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
157.3
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
63.9
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
30.1
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
25.9
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
25.3
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
22.3
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
21.8
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
20.3
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
18.8
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
18.2
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
18.1
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
15.4
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
15.1
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
14.9
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
13.4
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
12.3
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
11.9
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
11.6
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
11.1
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
10.9
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
10.4
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
10.1
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
9.5
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
9.3
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
9.2
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
9.2
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
8.8
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
7.6
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
7.5
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
6.7
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
6.6
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
6.0
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
5.7
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
5.6
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
5.3
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
5.2
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
5.1
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
4.8
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
4.2
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
4.2
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
4.2
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
4.0
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
3.9
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
3.6
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
3.5
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
3.3
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
3.0
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
3.0
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
2.9
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
2.7
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
2.6
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
2.6
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
2.6
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
2.5
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
2.4
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
2.3
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
2.3
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
2.2
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
2.0
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
1.8
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
1.4
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
1.0
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
0.4
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSP1 is not prognostic in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.7
Number of samples
521
Samples
Sample
Description
TPM
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
264.1
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
147.7
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
140.0
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
138.1
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
130.8
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
123.9
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
108.2
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
106.9
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
106.7
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
104.6
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
104.0
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
103.0
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
102.8
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
102.6
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
101.0
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
100.8
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
100.7
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
97.2
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
96.8
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
95.7
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
94.9
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
94.3
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
94.2
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
92.7
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
90.6
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
90.3
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
90.0
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
88.7
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
88.6
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
88.5
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
87.9
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
86.7
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
84.0
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
82.8
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
82.6
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
82.6
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
82.1
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
81.9
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
81.4
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
80.7
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
80.0
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
78.2
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
77.7
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
77.6
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
77.6
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
77.5
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
77.4
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
76.8
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
75.3
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
74.7
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
74.2
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
73.8
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
73.5
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
73.5
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
72.0
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
71.9
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
69.5
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
67.9
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
67.7
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
67.7
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
67.7
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
66.9
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
65.5
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
65.1
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
64.9
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
64.9
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
64.4
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
64.2
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
64.0
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
63.2
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
61.9
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
60.5
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
60.2
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
60.0
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
59.7
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
59.3
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
59.2
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
59.2
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
58.8
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
57.9
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
57.8
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
57.8
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
57.5
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
57.4
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
57.3
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
57.0
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
56.9
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
56.4
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
56.1
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
55.9
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
55.7
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
55.6
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
55.2
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
54.9
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
54.5
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
54.4
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
54.4
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
54.4
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
53.9
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
53.9
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
53.6
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
53.5
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
53.4
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
53.4
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
53.3
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
53.2
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
52.1
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
51.8
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
51.3
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
51.1
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
51.1
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
50.9
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
50.1
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
49.9
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
49.9
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
49.7
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
49.6
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
49.6
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
49.5
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
48.6
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
48.4
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
48.1
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
48.1
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
48.1
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
47.9
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
47.9
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
47.5
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
47.5
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
47.4
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
47.4
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
47.1
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
47.1
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
46.8
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
46.8
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
46.6
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
46.6
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
46.4
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
46.3
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
45.7
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
45.6
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
45.6
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
45.4
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
45.4
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
45.4
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
45.2
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
45.2
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
44.4
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
44.2
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
43.8
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
43.8
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
43.0
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
43.0
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
43.0
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
42.8
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
42.8
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
42.7
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
42.7
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
42.5
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
42.5
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
42.5
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
42.3
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
42.2
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
42.2
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
42.1
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
41.7
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
41.4
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
41.3
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
41.1
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
41.1
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
41.0
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
41.0
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
40.9
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
40.8
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
40.7
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
40.5
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
40.5
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
40.4
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
40.3
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
40.2
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
40.0
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
39.9
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
39.9
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
39.8
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
39.5
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
39.4
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
39.3
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
38.6
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
38.5
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
38.5
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
38.4
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
38.3
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
38.0
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
37.9
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
37.9
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
37.5
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
37.4
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
37.3
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
37.3
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
37.3
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
37.1
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
37.0
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
37.0
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
36.8
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
36.7
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
36.6
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
36.6
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
36.4
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
36.4
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
36.4
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
36.4
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
36.4
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
36.3
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
36.3
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
36.3
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
36.2
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
35.9
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
35.8
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
35.8
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
35.8
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
35.7
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
35.6
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
35.5
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
35.5
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
35.4
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
35.3
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
35.3
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
35.3
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
35.3
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
35.0
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
34.9
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
34.9
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
34.9
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
34.7
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
34.7
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
34.5
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
34.3
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
34.3
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
34.1
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
34.0
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
34.0
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
34.0
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
33.7
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
33.4
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
33.3
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
33.2
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
33.1
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
32.8
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
32.7
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
32.7
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
32.5
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
32.2
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
32.1
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
32.1
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
32.1
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
32.1
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
32.1
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
32.0
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
31.8
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
31.8
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
31.8
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
31.8
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
31.6
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
31.5
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
31.2
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
31.0
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
30.9
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
30.9
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
30.8
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
30.8
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
30.6
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
30.5
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
30.4
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
30.3
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
30.3
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
30.2
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
30.1
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
30.1
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
30.1
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
30.0
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
30.0
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
30.0
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
30.0
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
29.9
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
29.9
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
29.7
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
29.6
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
29.5
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
29.5
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
29.4
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
29.4
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
28.9
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
28.8
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
28.3
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
28.2
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
28.1
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
28.1
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
28.1
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
28.0
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
28.0
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
28.0
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
28.0
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
27.9
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
27.9
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
27.8
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
27.7
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
27.6
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
27.5
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
27.4
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
27.4
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
27.4
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
27.3
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
27.3
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
27.3
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
27.0
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
27.0
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
26.9
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
26.8
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
26.8
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
26.8
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
26.7
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
26.7
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
26.7
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
26.5
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
26.4
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
26.3
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
26.2
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
26.1
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
25.9
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
25.8
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
25.6
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
25.5
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
25.5
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
25.4
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
25.2
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
25.2
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
25.1
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
25.0
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
25.0
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
24.8
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
24.7
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
24.7
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
24.6
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
24.3
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
24.2
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
24.0
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
24.0
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
24.0
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
23.9
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
23.9
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
23.7
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
23.7
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
23.6
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
23.6
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
23.6
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
23.3
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
23.2
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
23.2
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
23.1
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
23.1
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
23.1
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
23.0
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
23.0
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
22.9
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
22.9
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
22.8
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
22.8
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
22.6
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
22.5
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
22.5
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
22.3
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
22.3
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
22.2
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
22.1
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
22.1
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
22.1
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
22.1
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
22.0
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
22.0
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
21.8
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
21.8
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
21.6
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
21.6
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
21.4
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
21.4
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
21.2
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
21.2
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
21.0
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
21.0
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
20.9
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
20.9
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
20.9
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
20.9
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
20.7
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
20.7
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
20.4
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
20.4
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
20.0
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
19.9
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
19.5
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
19.4
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
19.3
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
19.3
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
19.1
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
19.1
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
19.1
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
19.1
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
19.1
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
19.0
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
19.0
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
19.0
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
19.0
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
19.0
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
19.0
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
19.0
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
18.9
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
18.9
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
18.9
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
18.8
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
18.7
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
18.6
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
18.6
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
18.5
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
18.3
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
18.3
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
18.2
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
18.2
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
18.1
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
18.0
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
17.9
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
17.9
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
17.8
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
17.4
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
17.1
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
17.0
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
16.8
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
16.7
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
16.7
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
16.6
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
16.4
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
16.4
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
16.4
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
16.4
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
16.4
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
16.1
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
16.0
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
15.9
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
15.8
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
15.8
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
15.8
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
15.8
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
15.7
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
15.6
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
15.5
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
15.3
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
15.3
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
15.1
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
15.1
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
14.7
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
14.7
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
14.4
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
14.3
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
14.3
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
14.2
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
14.2
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
14.2
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
14.0
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
13.9
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
13.8
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
13.8
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
13.7
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
13.6
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
13.4
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
13.4
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
13.3
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
13.3
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
13.1
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
13.0
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
12.9
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
12.7
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
12.6
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
12.5
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
12.3
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
11.8
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
11.8
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
11.8
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
11.5
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
11.2
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
10.6
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
10.5
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
10.4
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
10.2
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
10.2
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
10.1
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
10.0
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
9.9
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
9.6
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
9.2
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
9.0
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
8.6
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
7.6
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
7.6
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
7.4
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
7.1
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
7.1
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
6.6
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
6.6
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
6.4
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
4.8
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
4.5
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
4.4
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
4.3
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
4.2
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
3.9
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
3.8
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
3.7
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
2.9
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
2.8
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
1.1
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
0.8
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
0.8
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSP1 is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.7
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
130.2
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
112.5
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
112.4
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
106.6
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
91.3
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
84.5
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
83.4
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
82.1
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
73.7
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
70.1
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
66.6
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
65.0
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
64.1
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
63.3
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
63.1
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
59.7
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
58.8
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
57.3
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
56.2
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
55.0
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
53.8
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
50.8
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
49.7
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
49.2
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
48.9
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
48.1
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
47.7
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
46.1
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
45.5
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
45.4
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
44.5
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
44.1
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
43.2
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
42.4
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
42.0
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
40.8
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
40.2
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
37.4
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
37.0
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
36.4
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
35.3
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
34.9
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
33.7
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
33.6
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
33.5
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
31.7
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
31.2
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
31.2
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
30.8
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
30.6
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
30.2
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
29.9
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
28.9
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
28.3
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
27.1
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
26.9
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
25.7
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
25.1
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
24.1
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
24.1
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
24.0
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
23.4
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
22.7
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
22.6
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
22.4
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
21.4
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
21.4
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
20.6
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
20.4
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
19.9
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
19.9
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
19.8
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
19.6
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
19.4
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
19.3
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
19.1
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
19.1
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
19.0
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
18.9
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
18.3
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
18.2
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
16.7
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
16.2
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
14.5
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
14.4
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
14.0
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
13.9
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
13.9
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
13.2
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
12.1
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
9.5
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
9.0
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
8.9
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
8.9
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
8.6
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
5.9
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
5.7
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
5.5
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
4.0
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSP1 is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.8
Number of samples
282
Samples
Sample
Description
TPM
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
288.5
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
274.4
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
235.1
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
218.4
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
197.3
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
175.1
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
173.0
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
168.0
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
161.9
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
151.8
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
124.3
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
121.5
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
117.2
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
115.9
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
114.1
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
112.4
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
111.6
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
111.1
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
106.2
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
103.6
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
99.8
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
99.4
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
97.1
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
96.9
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
94.3
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
91.3
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
89.8
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
88.8
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
88.5
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
88.3
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
87.8
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
87.7
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
84.5
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
82.6
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
82.4
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
79.3
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
78.1
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
78.1
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
77.5
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
76.7
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
71.4
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
71.4
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
70.5
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
69.6
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
69.6
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
68.1
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
65.7
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
65.1
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
64.0
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
63.0
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
62.8
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
62.0
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
61.9
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
61.8
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
61.6
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
60.7
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
60.4
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
60.3
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
60.2
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
59.5
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
58.5
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
58.3
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
58.1
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
57.9
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
57.1
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
56.2
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
56.1
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
56.1
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
55.9
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
55.8
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
54.8
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
54.2
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
53.0
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
52.8
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
52.5
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
52.4
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
51.3
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
50.9
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
50.5
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
48.8
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
48.8
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
48.5
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
47.5
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
47.4
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
46.9
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
46.3
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
46.1
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
45.4
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
45.4
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
45.4
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
45.0
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
44.9
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
44.7
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
43.7
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
42.8
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
42.3
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
42.0
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
41.7
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
41.0
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
40.6
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
39.4
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
39.3
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
39.0
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
38.9
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
38.9
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
38.8
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
38.3
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
38.2
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
37.9
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
37.8
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
37.2
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
37.1
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
36.8
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
36.6
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
36.5
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
36.3
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
36.2
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
36.2
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
36.0
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
35.7
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
35.1
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
34.8
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
34.7
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
34.4
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
34.0
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
33.5
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
33.1
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
32.9
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
32.8
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
32.4
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
32.4
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
32.3
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
32.3
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
32.2
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
31.9
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
31.8
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
31.7
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
31.7
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
31.4
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
31.3
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
31.2
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
30.9
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
30.7
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
30.6
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
30.5
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
30.4
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
30.3
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
30.2
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
29.8
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
29.7
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
29.6
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
29.5
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
29.3
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
29.2
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
29.2
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
28.4
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
28.3
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
28.0
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
27.8
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
27.4
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
27.3
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
27.2
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
27.1
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
27.0
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
27.0
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
26.6
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
26.4
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
25.9
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
25.9
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
25.7
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
25.5
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
25.4
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
24.8
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
24.6
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
24.2
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
23.8
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
23.8
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
23.7
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
23.6
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
23.3
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
22.6
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
22.4
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
22.1
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
22.0
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
21.9
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
21.8
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
21.4
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
21.2
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
21.0
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
20.8
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
20.8
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
20.5
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
20.4
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
20.3
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
20.2
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
20.1
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
20.0
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
20.0
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
19.6
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
19.1
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
19.0
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
19.0
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
18.9
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
18.6
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
18.3
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
18.0
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
17.8
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
17.7
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
17.5
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
17.4
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
17.2
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
17.0
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
16.6
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
16.5
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
16.4
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
16.4
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
16.4
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
16.1
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
15.9
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
15.8
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
15.7
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
15.7
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
15.6
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
15.0
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
15.0
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
14.9
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
14.7
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
14.6
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
14.3
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
14.1
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
14.0
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
13.9
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
13.6
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
13.6
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.3
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
12.7
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
12.4
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
11.9
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
11.7
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
11.7
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
11.6
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
11.6
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
11.5
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
11.4
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
11.4
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
11.4
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
11.2
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
11.0
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
11.0
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
10.9
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
10.8
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
10.7
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
10.3
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
10.2
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
9.6
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
9.5
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
9.4
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
9.4
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
9.1
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
9.1
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
8.9
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
8.8
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
8.5
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
8.3
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
8.1
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
7.7
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
7.5
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
7.3
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
7.2
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
7.0
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
6.8
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
6.2
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
6.0
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
6.0
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
4.7
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
3.6
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
2.2
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
2.0
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
1.5
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
0.6
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
0.0
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0088550004
Tumor
2.6
CPT0012180003
Tumor
1.6
CPT0079380003
Tumor
1.5
CPT0084560003
Tumor
1.5
CPT0017410003
Tumor
1.4
CPT0078990003
Tumor
1.4
CPT0001540009
Tumor
1.2
CPT0017850003
Tumor
1.2
CPT0075560003
Tumor
1.1
CPT0086360003
Tumor
1.1
CPT0092730003
Tumor
1.1
CPT0010110003
Tumor
1.1
CPT0092160003
Tumor
1.0
CPT0076330003
Tumor
1.0
CPT0077320001
Normal
1.0
CPT0081990003
Tumor
1.0
CPT0025290003
Tumor
1.0
CPT0020120003
Tumor
1.0
CPT0026410003
Tumor
0.9
CPT0023350003
Tumor
0.9
CPT0078800003
Tumor
0.8
CPT0065430003
Tumor
0.8
CPT0025050003
Tumor
0.8
CPT0066480003
Tumor
0.8
CPT0002350011
Tumor
0.8
CPT0023690003
Tumor
0.8
CPT0092190003
Normal
0.8
CPT0007860003
Tumor
0.8
CPT0015730003
Tumor
0.8
CPT0063630003
Tumor
0.7
CPT0009060003
Tumor
0.7
CPT0007320003
Tumor
0.7
CPT0012280003
Tumor
0.7
CPT0064370003
Tumor
0.6
CPT0001260009
Tumor
0.6
CPT0006900003
Tumor
0.6
CPT0065810003
Tumor
0.6
CPT0065870003
Tumor
0.6
CPT0075170001
Normal
0.5
CPT0079410003
Tumor
0.5
CPT0025880003
Tumor
0.5
CPT0001180009
Tumor
0.5
CPT0012670003
Tumor
0.5
CPT0088690003
Tumor
0.5
CPT0011240003
Tumor
0.5
CPT0077110003
Tumor
0.5
CPT0019990003
Tumor
0.4
CPT0081600003
Tumor
0.4
CPT0014160003
Tumor
0.4
CPT0086950003
Tumor
0.4
CPT0087040003
Tumor
0.4
CPT0065690003
Tumor
0.4
CPT0086820003
Tumor
0.4
CPT0088480003
Tumor
0.3
CPT0081880003
Tumor
0.3
CPT0086870003
Tumor
0.3
CPT0001220008
Tumor
0.3
CPT0075720003
Tumor
0.3
CPT0024670003
Tumor
0.3
CPT0001270001
Normal
0.3
CPT0084590001
Normal
0.3
CPT0025230003
Tumor
0.3
CPT0088570001
Normal
0.2
CPT0012370003
Tumor
0.2
CPT0014370004
Tumor
0.2
CPT0015910003
Tumor
0.2
CPT0014450004
Tumor
0.2
CPT0078930003
Tumor
0.2
CPT0079230003
Tumor
0.2
CPT0000870016
Tumor
0.2
CPT0012550003
Tumor
0.2
CPT0001500009
Tumor
0.2
CPT0014470001
Normal
0.2
CPT0088970003
Tumor
0.2
CPT0077310003
Tumor
0.2
CPT0065750003
Tumor
0.2
CPT0088630003
Tumor
0.2
CPT0021240003
Tumor
0.2
CPT0000640003
Tumor
0.2
CPT0069160003
Tumor
0.2
CPT0085670003
Tumor
0.1
CPT0069000003
Tumor
0.1
CPT0065820001
Normal
0.1
CPT0019130003
Tumor
0.1
CPT0079270003
Tumor
0.1
CPT0012080003
Tumor
0.1
CPT0009000003
Tumor
0.1
CPT0075570001
Normal
0.1
CPT0075130003
Tumor
0.1
CPT0078510003
Tumor
0.0
CPT0011410003
Tumor
0.0
CPT0025170003
Tumor
0.0
CPT0092290003
Tumor
0.0
CPT0000780007
Tumor
0.0
CPT0071150004
Tumor
-0.1
CPT0025110003
Tumor
-0.1
CPT0086030003
Tumor
-0.1
CPT0002270011
Tumor
-0.1
CPT0015810003
Tumor
-0.1
CPT0012290003
Normal
-0.1
CPT0088900003
Tumor
-0.2
CPT0006630003
Tumor
-0.2
CPT0012900004
Tumor
-0.2
CPT0025580004
Tumor
-0.2
CPT0065930003
Tumor
-0.2
CPT0010120001
Normal
-0.2
CPT0066520001
Normal
-0.2
CPT0088760003
Tumor
-0.2
CPT0079480003
Tumor
-0.2
CPT0089460004
Tumor
-0.2
CPT0012920003
Normal
-0.3
CPT0089020003
Tumor
-0.3
CPT0092790003
Tumor
-0.3
CPT0078660003
Tumor
-0.3
CPT0063320003
Tumor
-0.3
CPT0079300001
Normal
-0.3
CPT0006440003
Tumor
-0.3
CPT0013790003
Normal
-0.3
CPT0066470004
Tumor
-0.4
CPT0078830003
Tumor
-0.4
CPT0018250001
Normal
-0.4
CPT0088710001
Normal
-0.5
CPT0000660001
Normal
-0.5
CPT0006530001
Normal
-0.5
CPT0010160003
Tumor
-0.5
CPT0024680001
Normal
-0.5
CPT0069190001
Normal
-0.5
CPT0025350003
Tumor
-0.5
CPT0077490003
Tumor
-0.6
CPT0012640003
Normal
-0.6
CPT0082010001
Normal
-0.6
CPT0000890001
Normal
-0.6
CPT0009020003
Normal
-0.6
CPT0014130001
Normal
-0.6
CPT0001190001
Normal
-0.6
CPT0023360001
Normal
-0.7
CPT0001550001
Normal
-0.7
CPT0025060001
Normal
-0.7
CPT0063330001
Normal
-0.8
CPT0077500001
Normal
-0.8
CPT0017450001
Normal
-0.8
CPT0088920001
Normal
-0.8
CPT0001230001
Normal
-0.8
CPT0012090003
Normal
-0.9
CPT0019160001
Normal
-0.9
CPT0092310003
Normal
-0.9
CPT0086830003
Normal
-0.9
CPT0001510001
Normal
-0.9
CPT0002370001
Normal
-1.0
CPT0076350001
Normal
-1.0
CPT0086970003
Normal
-1.0
CPT0078530001
Normal
-1.0
CPT0079430001
Normal
-1.1
CPT0089040001
Normal
-1.1
CPT0078940001
Normal
-1.1
CPT0079180003
Tumor
-1.1
CPT0086370003
Normal
-1.1
CPT0001340003
Tumor
-1.1
CPT0079510001
Normal
-1.1
CPT0025610001
Normal
-1.1
CPT0077140001
Normal
-1.1
CPT0081620001
Normal
-1.1
CPT0006730001
Normal
-1.2
CPT0088780001
Normal
-1.2
CPT0025920001
Normal
-1.2
CPT0020020001
Normal
-1.2
CPT0092800003
Normal
-1.2
CPT0069010001
Normal
-1.2
CPT0078840001
Normal
-1.2
CPT0079000001
Normal
-1.2
CPT0088640003
Normal
-1.3
CPT0012570003
Normal
-1.3
CPT0014350001
Normal
-1.3
CPT0092740003
Normal
-1.3
CPT0087050003
Normal
-1.3
CPT0063640001
Normal
-1.3
CPT0026420001
Normal
-1.3
CPT0088500001
Normal
-1.3
CPT0078670001
Normal
-1.3
CPT0020130001
Normal
-1.4
CPT0010170001
Normal
-1.4
CPT0089480003
Normal
-1.4
CPT0007870001
Normal
-1.4
CPT0001350001
Normal
-1.4
CPT0065450001
Normal
-1.5
CPT0086890003
Normal
-1.5
CPT0023710001
Normal
-1.5
CPT0006950001
Normal
-1.6
CPT0000790001
Normal
-1.6
CPT0007470001
Normal
-1.6
CPT0012770003
Normal
-1.7
CPT0009080003
Normal
-1.7
CPT0064400001
Normal
-1.8
CPT0066430001
Normal
-1.8
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.