We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
470.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
161.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
109.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
98.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
80.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
66.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
66.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
61.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
61.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
58.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
57.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
56.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
48.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
46.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
45.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
44.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
43.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
42.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
41.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
41.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
40.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
35.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
35.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
34.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
34.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
34.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
32.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
31.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
24.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
24.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
24.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
22.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
20.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LSP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.4
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
849.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
403.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
172.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
170.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
155.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
125.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
95.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
94.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
89.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
89.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
88.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
80.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
71.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
67.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
64.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
62.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
60.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
58.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
56.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
53.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
53.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
50.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
44.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
43.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
40.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
39.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
39.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
39.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
38.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
38.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
37.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
36.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
34.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
34.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
32.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
32.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
29.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
26.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
26.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
20.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.8
724
Normal
1.6
375
Tumor
1.6
455
Tumor
1.2
311
Tumor
1.2
917
Tumor
1.2
213
Tumor
1.1
535
Tumor
1.1
1031
Tumor
1.1
661
Tumor
1.0
536
Normal
1.0
966
Normal
0.9
492
Normal
0.9
697
Tumor
0.9
434
Normal
0.9
823
Tumor
0.9
385
Tumor
0.9
975
Tumor
0.8
721
Tumor
0.8
447
Tumor
0.8
963
Tumor
0.8
943
Tumor
0.8
383
Tumor
0.8
478
Normal
0.8
978
Normal
0.8
444
Normal
0.8
188
Normal
0.7
498
Normal
0.7
195
Tumor
0.7
573
Tumor
0.7
467
Tumor
0.7
223
Tumor
0.7
857
Tumor
0.6
471
Tumor
0.6
814
Normal
0.6
817
Tumor
0.6
268
Normal
0.6
391
Tumor
0.6
713
Tumor
0.6
192
Normal
0.6
141
Tumor
0.6
524
Normal
0.6
463
Tumor
0.6
563
Tumor
0.5
716
Normal
0.5
916
Normal
0.5
976
Normal
0.5
861
Tumor
0.5
525
Tumor
0.5
185
Tumor
0.5
384
Normal
0.5
262
Normal
0.5
386
Normal
0.4
983
Tumor
0.4
628
Normal
0.4
493
Tumor
0.4
191
Tumor
0.4
1043
Tumor
0.4
365
Tumor
0.4
125
Tumor
0.4
881
Tumor
0.4
516
Normal
0.4
362
Normal
0.4
662
Normal
0.4
217
Tumor
0.3
413
Tumor
0.3
284
Normal
0.3
187
Tumor
0.3
427
Tumor
0.3
686
Normal
0.3
297
Tumor
0.3
146
Normal
0.3
851
Tumor
0.3
415
Tumor
0.3
715
Tumor
0.3
224
Normal
0.3
212
Normal
0.3
126
Normal
0.3
272
Normal
0.3
491
Tumor
0.3
567
Tumor
0.3
343
Tumor
0.2
366
Normal
0.2
538
Normal
0.2
145
Tumor
0.2
367
Tumor
0.2
852
Normal
0.2
883
Tumor
0.2
328
Normal
0.2
135
Tumor
0.2
461
Tumor
0.2
312
Normal
0.2
685
Tumor
0.2
958
Normal
0.2
815
Tumor
0.2
874
Normal
0.2
355
Tumor
0.2
363
Tumor
0.1
813
Tumor
0.1
617
Tumor
0.1
951
Tumor
0.1
953
Tumor
0.1
161
Tumor
0.1
474
Normal
0.1
421
Tumor
0.1
387
Tumor
0.1
858
Normal
0.1
738
Normal
0.1
468
Normal
0.1
451
Tumor
0.1
331
Tumor
0.1
914
Normal
0.1
396
Normal
0.1
364
Normal
0.1
1015
Tumor
0.0
494
Normal
0.0
424
Normal
0.0
968
Normal
0.0
954
Normal
0.0
755
Tumor
0.0
1044
Normal
0.0
1042
Normal
0.0
666
Normal
0.0
921
Tumor
0.0
456
Normal
0.0
395
Tumor
0.0
114
Normal
0.0
778
Normal
0.0
868
Normal
0.0
967
Tumor
0.0
537
Tumor
0.0
428
Normal
0.0
423
Tumor
0.0
696
Normal
0.0
663
Tumor
0.0
671
Tumor
-0.1
714
Normal
-0.1
867
Tumor
-0.1
574
Normal
-0.1
952
Normal
-0.1
722
Normal
-0.1
984
Normal
-0.1
816
Normal
-0.1
955
Tumor
-0.1
138
Normal
-0.1
924
Normal
-0.1
124
Normal
-0.1
1016
Normal
-0.1
545
Tumor
-0.1
443
Tumor
-0.1
394
Normal
-0.1
877
Tumor
-0.1
558
Normal
-0.1
918
Normal
-0.1
913
Tumor
-0.1
664
Normal
-0.1
956
Normal
-0.2
938
Normal
-0.2
723
Tumor
-0.2
514
Normal
-0.2
884
Normal
-0.2
925
Tumor
-0.2
1028
Normal
-0.2
452
Normal
-0.2
482
Normal
-0.2
142
Normal
-0.2
432
Normal
-0.2
785
Tumor
-0.2
483
Tumor
-0.2
412
Normal
-0.2
756
Normal
-0.2
283
Tumor
-0.2
926
Normal
-0.2
965
Tumor
-0.2
426
Normal
-0.2
518
Normal
-0.2
472
Normal
-0.2
388
Normal
-0.2
416
Normal
-0.2
641
Tumor
-0.2
488
Normal
-0.2
923
Tumor
-0.2
1045
Tumor
-0.3
882
Normal
-0.3
466
Normal
-0.3
728
Normal
-0.3
818
Normal
-0.3
277
Tumor
-0.3
332
Normal
-0.3
523
Tumor
-0.3
786
Normal
-0.3
464
Normal
-0.3
433
Tumor
-0.3
878
Normal
-0.3
376
Normal
-0.3
698
Normal
-0.3
136
Normal
-0.3
672
Normal
-0.3
866
Normal
-0.3
922
Normal
-0.3
1032
Normal
-0.3
228
Normal
-0.3
824
Normal
-0.3
137
Tumor
-0.3
393
Tumor
-0.3
214
Normal
-0.4
258
Normal
-0.4
546
Normal
-0.4
352
Normal
-0.4
446
Normal
-0.4
865
Tumor
-0.4
864
Normal
-0.4
528
Normal
-0.4
298
Normal
-0.4
648
Normal
-0.4
727
Tumor
-0.4
361
Tumor
-0.4
278
Normal
-0.4
368
Normal
-0.4
1025
Tumor
-0.4
356
Normal
-0.4
414
Normal
-0.4
462
Normal
-0.4
257
Tumor
-0.5
517
Tumor
-0.5
162
Normal
-0.5
473
Tumor
-0.5
742
Normal
-0.5
481
Tumor
-0.5
353
Tumor
-0.5
392
Normal
-0.5
1014
Normal
-0.5
221
Tumor
-0.5
1026
Normal
-0.5
534
Normal
-0.5
937
Tumor
-0.5
448
Normal
-0.5
554
Normal
-0.5
111
Normal
-0.5
526
Normal
-0.5
425
Tumor
-0.5
354
Normal
-0.5
862
Normal
-0.6
132
Normal
-0.6
982
Normal
-0.6
285
Tumor
-0.6
1046
Normal
-0.6
863
Tumor
-0.6
964
Normal
-0.6
222
Normal
-0.6
196
Normal
-0.6
422
Normal
-0.6
172
Normal
-0.6
912
Normal
-0.6
572
Normal
-0.6
351
Tumor
-0.6
286
Normal
-0.6
327
Tumor
-0.6
341
Tumor
-0.6
744
Normal
-0.6
665
Tumor
-0.6
647
Tumor
-0.6
873
Tumor
-0.6
218
Normal
-0.6
148
Normal
-0.6
358
Normal
-0.7
564
Normal
-0.7
636
Normal
-0.7
186
Normal
-0.7
527
Tumor
-0.7
497
Tumor
-0.7
487
Tumor
-0.7
344
Normal
-0.7
227
Tumor
-0.7
431
Tumor
-0.7
1022
Normal
-0.7
147
Tumor
-0.7
436
Normal
-0.7
571
Tumor
-0.8
533
Tumor
-0.8
313
Tumor
-0.8
553
Tumor
-0.8
484
Normal
-0.8
271
Tumor
-0.8
977
Tumor
-0.8
232
Normal
-0.8
267
Tumor
-0.8
944
Normal
-0.8
113
Tumor
-0.8
1027
Tumor
-0.8
515
Tumor
-0.9
445
Tumor
-0.9
568
Normal
-0.9
695
Tumor
-0.9
131
Tumor
-0.9
261
Tumor
-0.9
127
Tumor
-0.9
1021
Tumor
-0.9
737
Tumor
-0.9
128
Normal
-0.9
915
Tumor
-0.9
618
Normal
-0.9
746
Normal
-1.0
616
Normal
-1.0
642
Normal
-1.0
411
Tumor
-1.0
627
Tumor
-1.0
957
Tumor
-1.0
513
Tumor
-1.0
465
Tumor
-1.0
342
Normal
-1.0
635
Tumor
-1.0
1041
Tumor
-1.1
911
Tumor
-1.1
357
Tumor
-1.1
314
Normal
-1.1
477
Tumor
-1.1
777
Tumor
-1.2
557
Tumor
-1.2
171
Tumor
-1.2
745
Tumor
-1.2
112
Tumor
-1.3
1013
Tumor
-1.3
435
Tumor
-1.3
981
Tumor
-1.5
231
Tumor
-1.5
615
Tumor
-1.5
123
Tumor
-1.6
741
Tumor
-1.6
743
Tumor
-1.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
