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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARPC1B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
82.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
457.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
419.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
363.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
318.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
317.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
293.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
290.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
276.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
273.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
263.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
263.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
263.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
260.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
260.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
236.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
231.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
230.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
229.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
222.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
219.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
215.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
213.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
210.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
203.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
201.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
200.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
194.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
194.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
189.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
186.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
181.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
177.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
165.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
163.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
160.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
158.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
157.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
157.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
155.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
153.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
153.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
150.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
148.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
145.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
139.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
137.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
135.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
135.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
135.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
134.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
134.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
133.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
131.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
130.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
130.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
129.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
128.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
128.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
127.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
127.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
125.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
124.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
124.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
122.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
121.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
120.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
119.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
118.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
118.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
118.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
117.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
117.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
116.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
115.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
114.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
114.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
113.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
112.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
112.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
111.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
110.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
109.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
109.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
109.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
108.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
108.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
106.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
105.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
105.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
105.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
104.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
104.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
104.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
102.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
101.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
98.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
97.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
96.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
96.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
96.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
96.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
96.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
95.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
95.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
94.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
94.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
93.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
92.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
92.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
92.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
91.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
91.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
90.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
90.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
89.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
89.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
89.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
88.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
88.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
87.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
87.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
86.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
85.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
85.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
85.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
85.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
85.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
85.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
85.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
84.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
84.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
84.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
83.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
83.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
83.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
81.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
81.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
81.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
81.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
80.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
80.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
80.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
80.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
79.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
78.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
78.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
78.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
78.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
78.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
78.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
78.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
77.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
77.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
77.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
77.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
76.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
75.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
75.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
75.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
74.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
74.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
74.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
73.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
73.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
72.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
71.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
71.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
71.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
70.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
70.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
70.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
70.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
69.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
69.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
69.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
69.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
68.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
67.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
67.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
66.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
66.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
65.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
65.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
64.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
64.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
64.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
63.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
62.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
62.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
62.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
61.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
61.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
60.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
58.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
58.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
58.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
58.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
57.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
57.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
57.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
57.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
56.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
56.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
56.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
56.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
56.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
55.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
55.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
55.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
55.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
55.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
54.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
54.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
54.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
53.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
53.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
52.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
52.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
52.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
52.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
52.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
51.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
51.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
51.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
50.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
50.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
50.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
50.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
50.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
49.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
48.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
48.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
48.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
48.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
48.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
47.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
47.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
47.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
46.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
46.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
46.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
45.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
45.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
44.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
44.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
44.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
44.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
44.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
44.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
43.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
43.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
43.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
42.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
42.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
41.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
41.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
41.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
41.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
41.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
41.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
40.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
40.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
40.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
39.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
39.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
39.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
39.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
38.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
38.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
38.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
38.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
36.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
36.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
35.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
35.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
35.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
35.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
35.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
34.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
34.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
33.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
32.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
31.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
31.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
30.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
30.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
30.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
30.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
29.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
29.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
27.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
25.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
22.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARPC1B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
79.8
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
1131.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
573.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
336.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
323.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
315.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
290.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
279.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
266.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
239.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
228.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
210.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
194.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
172.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
163.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
161.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
157.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
156.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
154.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
152.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
149.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
148.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
145.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
145.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
144.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
144.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
144.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
143.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
139.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
136.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
134.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
132.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
130.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
128.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
128.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
126.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
121.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
119.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
118.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
117.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
115.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
114.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
112.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
111.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
110.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
108.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
108.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
108.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
108.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
105.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
103.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
102.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
102.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
100.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
99.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
98.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
97.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
97.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
95.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
93.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
93.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
92.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
91.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
90.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
90.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
89.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
89.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
89.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
87.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
86.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
85.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
84.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
84.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
84.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
83.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
83.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
81.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
81.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
81.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
80.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
79.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
79.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
79.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
77.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
77.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
76.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
75.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
74.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
72.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
71.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
71.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
70.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
70.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
69.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
69.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
68.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
68.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
68.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
67.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
67.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
66.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
66.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
65.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
65.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
65.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
62.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
61.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
60.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
60.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
60.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
60.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
59.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
59.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
59.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
59.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
59.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
59.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
57.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
56.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
56.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
56.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
55.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
55.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
54.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
54.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
54.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
54.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
53.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
53.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
53.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
52.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
52.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
52.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
52.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
51.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
50.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
48.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
47.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
47.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
47.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
47.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
46.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
46.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
46.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
43.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
43.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
43.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
43.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
42.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
41.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
40.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
40.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
40.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
40.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
39.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
39.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
38.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
38.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
38.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
38.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
36.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
36.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
36.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
35.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
34.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
34.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
34.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
33.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
32.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
32.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
31.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
31.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
28.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
0.7
661
Tumor
0.6
455
Tumor
0.6
492
Normal
0.6
434
Normal
0.6
311
Tumor
0.5
185
Tumor
0.5
471
Tumor
0.5
213
Tumor
0.5
917
Tumor
0.5
975
Tumor
0.4
1031
Tumor
0.4
943
Tumor
0.4
283
Tumor
0.4
525
Tumor
0.4
823
Tumor
0.4
141
Tumor
0.4
724
Normal
0.4
223
Tumor
0.4
375
Tumor
0.4
217
Tumor
0.4
343
Tumor
0.4
535
Tumor
0.4
813
Tumor
0.3
135
Tumor
0.3
538
Normal
0.3
491
Tumor
0.3
925
Tumor
0.3
192
Normal
0.3
963
Tumor
0.3
817
Tumor
0.3
1015
Tumor
0.3
125
Tumor
0.3
461
Tumor
0.3
952
Normal
0.3
385
Tumor
0.3
297
Tumor
0.3
881
Tumor
0.3
697
Tumor
0.3
966
Normal
0.3
983
Tumor
0.3
271
Tumor
0.2
951
Tumor
0.2
861
Tumor
0.2
124
Normal
0.2
126
Normal
0.2
395
Tumor
0.2
137
Tumor
0.2
755
Tumor
0.2
387
Tumor
0.2
188
Normal
0.2
146
Normal
0.2
363
Tumor
0.2
421
Tumor
0.2
383
Tumor
0.1
743
Tumor
0.1
573
Tumor
0.1
493
Tumor
0.1
444
Normal
0.1
567
Tumor
0.1
483
Tumor
0.1
883
Tumor
0.1
367
Tumor
0.1
195
Tumor
0.1
524
Normal
0.1
138
Normal
0.1
355
Tumor
0.1
937
Tumor
0.1
362
Normal
0.1
713
Tumor
0.1
851
Tumor
0.1
721
Tumor
0.1
218
Normal
0.1
914
Normal
0.1
516
Normal
0.1
425
Tumor
0.1
545
Tumor
0.1
268
Normal
0.1
921
Tumor
0.1
214
Normal
0.1
557
Tumor
0.1
1028
Normal
0.1
262
Normal
0.1
536
Normal
0.1
114
Normal
0.1
814
Normal
0.1
685
Tumor
0.1
715
Tumor
0.0
1021
Tumor
0.0
956
Normal
0.0
452
Normal
0.0
537
Tumor
0.0
191
Tumor
0.0
662
Normal
0.0
136
Normal
0.0
386
Normal
0.0
131
Tumor
0.0
312
Normal
0.0
976
Normal
0.0
867
Tumor
0.0
366
Normal
0.0
671
Tumor
0.0
272
Normal
0.0
745
Tumor
0.0
563
Tumor
0.0
451
Tumor
0.0
778
Normal
0.0
474
Normal
0.0
515
Tumor
0.0
1043
Tumor
0.0
874
Normal
0.0
467
Tumor
0.0
468
Normal
0.0
518
Normal
0.0
443
Tumor
0.0
477
Tumor
0.0
171
Tumor
0.0
344
Normal
0.0
142
Normal
0.0
447
Tumor
0.0
147
Tumor
0.0
415
Tumor
0.0
331
Tumor
0.0
744
Normal
0.0
923
Tumor
-0.1
365
Tumor
-0.1
915
Tumor
-0.1
553
Tumor
-0.1
257
Tumor
-0.1
327
Tumor
-0.1
1025
Tumor
-0.1
392
Normal
-0.1
384
Normal
-0.1
953
Tumor
-0.1
728
Normal
-0.1
498
Normal
-0.1
368
Normal
-0.1
527
Tumor
-0.1
686
Normal
-0.1
221
Tumor
-0.1
478
Normal
-0.1
433
Tumor
-0.1
456
Normal
-0.1
278
Normal
-0.1
427
Tumor
-0.1
738
Normal
-0.1
574
Normal
-0.1
737
Tumor
-0.1
877
Tumor
-0.1
815
Tumor
-0.1
913
Tumor
-0.1
161
Tumor
-0.1
412
Normal
-0.1
977
Tumor
-0.1
432
Normal
-0.1
145
Tumor
-0.1
878
Normal
-0.2
746
Normal
-0.2
212
Normal
-0.2
172
Normal
-0.2
187
Tumor
-0.2
422
Normal
-0.2
463
Tumor
-0.2
364
Normal
-0.2
111
Normal
-0.2
284
Normal
-0.2
517
Tumor
-0.2
967
Tumor
-0.2
957
Tumor
-0.2
955
Tumor
-0.2
978
Normal
-0.2
1016
Normal
-0.2
396
Normal
-0.2
497
Tumor
-0.2
864
Normal
-0.2
258
Normal
-0.2
416
Normal
-0.2
554
Normal
-0.2
916
Normal
-0.2
285
Tumor
-0.2
617
Tumor
-0.2
391
Tumor
-0.2
388
Normal
-0.2
445
Tumor
-0.2
435
Tumor
-0.2
982
Normal
-0.2
716
Normal
-0.2
533
Tumor
-0.2
394
Normal
-0.2
224
Normal
-0.2
376
Normal
-0.2
186
Normal
-0.2
863
Tumor
-0.2
113
Tumor
-0.2
857
Tumor
-0.2
261
Tumor
-0.2
356
Normal
-0.3
487
Tumor
-0.3
128
Normal
-0.3
332
Normal
-0.3
426
Normal
-0.3
981
Tumor
-0.3
1026
Normal
-0.3
641
Tumor
-0.3
924
Normal
-0.3
727
Tumor
-0.3
464
Normal
-0.3
816
Normal
-0.3
672
Normal
-0.3
227
Tumor
-0.3
342
Normal
-0.3
785
Tumor
-0.3
328
Normal
-0.3
526
Normal
-0.3
968
Normal
-0.3
1013
Tumor
-0.3
231
Tumor
-0.3
642
Normal
-0.3
558
Normal
-0.3
413
Tumor
-0.3
358
Normal
-0.3
313
Tumor
-0.3
424
Normal
-0.3
298
Normal
-0.3
664
Normal
-0.3
984
Normal
-0.3
228
Normal
-0.3
866
Normal
-0.3
698
Normal
-0.3
446
Normal
-0.3
494
Normal
-0.3
357
Tumor
-0.3
414
Normal
-0.3
1044
Normal
-0.3
448
Normal
-0.3
148
Normal
-0.3
423
Tumor
-0.3
132
Normal
-0.3
628
Normal
-0.3
873
Tumor
-0.3
361
Tumor
-0.3
635
Tumor
-0.3
564
Normal
-0.3
523
Tumor
-0.3
926
Normal
-0.3
696
Normal
-0.3
232
Normal
-0.3
162
Normal
-0.3
918
Normal
-0.3
528
Normal
-0.3
911
Tumor
-0.3
123
Tumor
-0.3
222
Normal
-0.4
352
Normal
-0.4
286
Normal
-0.4
462
Normal
-0.4
466
Normal
-0.4
958
Normal
-0.4
742
Normal
-0.4
472
Normal
-0.4
1041
Tumor
-0.4
196
Normal
-0.4
546
Normal
-0.4
488
Normal
-0.4
1027
Tumor
-0.4
615
Tumor
-0.4
722
Normal
-0.4
954
Normal
-0.4
568
Normal
-0.4
341
Tumor
-0.4
868
Normal
-0.4
267
Tumor
-0.4
964
Normal
-0.4
353
Tumor
-0.4
1045
Tumor
-0.4
723
Tumor
-0.4
277
Tumor
-0.4
756
Normal
-0.4
112
Tumor
-0.4
571
Tumor
-0.4
618
Normal
-0.4
882
Normal
-0.4
436
Normal
-0.4
666
Normal
-0.5
428
Normal
-0.5
714
Normal
-0.5
1022
Normal
-0.5
1014
Normal
-0.5
1032
Normal
-0.5
944
Normal
-0.5
572
Normal
-0.5
865
Tumor
-0.5
777
Tumor
-0.5
127
Tumor
-0.5
636
Normal
-0.5
1042
Normal
-0.5
354
Normal
-0.5
922
Normal
-0.5
786
Normal
-0.5
824
Normal
-0.5
665
Tumor
-0.5
351
Tumor
-0.5
482
Normal
-0.5
852
Normal
-0.5
938
Normal
-0.5
411
Tumor
-0.5
314
Normal
-0.5
393
Tumor
-0.5
534
Normal
-0.5
663
Tumor
-0.6
473
Tumor
-0.6
627
Tumor
-0.6
514
Normal
-0.6
648
Normal
-0.6
965
Tumor
-0.6
884
Normal
-0.6
647
Tumor
-0.6
818
Normal
-0.6
858
Normal
-0.6
431
Tumor
-0.6
741
Tumor
-0.6
862
Normal
-0.6
484
Normal
-0.7
481
Tumor
-0.7
912
Normal
-0.7
616
Normal
-0.7
1046
Normal
-0.8
465
Tumor
-0.8
695
Tumor
-0.9
513
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
