Expression of AFDN in liver cancer - The Human Protein Atlas

LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

AFDN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 19.29

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average TPM

21.9

Number of samples

362

Samples

Sample	Description	TPM
TCGA-CC-5264-01A	0 years, male, asian, stage:Stage IIIA, dead, 102 days	112.3
TCGA-CC-5263-01A	0 years, male, asian, stage:Stage IIIA, dead, 129 days	85.3
TCGA-DD-A1EF-01A	0 years, female, white, stage:Stage I, dead, 394 days	85.1
TCGA-CC-5260-01A	0 years, female, asian, stage:Stage IIIC, dead, 87 days	83.9
TCGA-UB-A7MC-01A	0 years, male, white, stage:Stage IIIA, alive, 500 days	81.3
TCGA-BC-A10Q-01A	0 years, female, white, stage:'--, dead, 1135 days	80.6
TCGA-UB-A7MB-01A	0 years, male, white, stage:Stage II, alive, 601 days	78.8
TCGA-BC-A10Z-01A	0 years, female, white, stage:Stage I, dead, 34 days	77.6
TCGA-ZP-A9D2-01A	0 years, male, white, stage:'--, dead, 765 days	76.7
TCGA-CC-A3MB-01A	0 years, male, asian, stage:Stage IIIA, dead, 315 days	74.9
TCGA-FV-A3I0-01A	0 years, female, white, stage:Stage II, alive, 848 days	74.3
TCGA-QA-A7B7-01A	0 years, male, black or african american, stage:Stage II, alive, 94 days	73.0
TCGA-5C-A9VG-01A	0 years, male, white, stage:Stage II, alive, 328 days	69.4
TCGA-XR-A8TC-01A	0 years, female, white, stage:Stage I, alive, 1339 days	67.5
TCGA-DD-AACN-01A	0 years, male, asian, stage:Stage I, alive, 1302 days	66.6
TCGA-CC-A8HS-01A	0 years, male, asian, stage:Stage IIIC, dead, 300 days	62.9
TCGA-BC-A8YO-01A	0 years, female, white, stage:Stage IIIC, alive, 562 days	62.7
TCGA-BC-A10W-01A	0 years, male, asian, stage:'--, dead, 91 days	58.9
TCGA-G3-A25U-01A	0 years, female, asian, stage:Stage I, alive, 1636 days	58.5
TCGA-CC-5261-01A	0 years, male, asian, stage:Stage II, dead, 97 days	58.3
TCGA-XR-A8TE-01A	0 years, male, white, stage:Stage IIIA, alive, 925 days	57.8
TCGA-XR-A8TF-01A	0 years, male, white, stage:Stage I, dead, 693 days	56.9
TCGA-DD-AACS-01A	0 years, male, asian, stage:Stage I, alive, 1804 days	56.8
TCGA-DD-AAD1-01A	0 years, female, asian, stage:Stage I, alive, 564 days	55.7
TCGA-DD-A4NE-01A	0 years, female, white, stage:Stage IIIA, dead, 660 days	55.0
TCGA-G3-A7M6-01A	0 years, female, white, stage:Stage I, alive, 632 days	54.6
TCGA-BC-A3KG-01A	0 years, female, white, stage:Stage II, alive, 680 days	51.5
TCGA-GJ-A9DB-01A	0 years, male, white, stage:Stage I, dead, 67 days	50.4
TCGA-XR-A8TG-01A	0 years, male, white, stage:Stage I, alive, 898 days	50.3
TCGA-K7-AAU7-01A	0 years, male, white, stage:Stage II, alive, 359 days	48.7
TCGA-ED-A97K-01A	0 years, male, asian, stage:Stage IIIA, alive, 6 days	47.9
TCGA-DD-A73B-01A	0 years, female, white, stage:Stage I, dead, 283 days	47.6
TCGA-DD-A113-01A	0 years, female, white, stage:Stage II, alive, 2425 days	47.4
TCGA-DD-A4NA-01A	0 years, female, white, stage:Stage IIIC, alive, 1008 days	46.3
TCGA-ED-A82E-01A	0 years, female, asian, stage:Stage IIIA, alive, 408 days	44.8
TCGA-2Y-A9GS-01A	0 years, male, white, stage:'--, dead, 724 days	44.5
TCGA-LG-A9QC-01A	0 years, male, white, stage:Stage I, alive, 425 days	44.5
TCGA-DD-A73C-01A	0 years, female, white, stage:Stage IIIA, alive, 701 days	43.9
TCGA-G3-AAV7-01A	0 years, male, asian, stage:Stage II, alive, 361 days	43.2
TCGA-DD-AACV-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	42.5
TCGA-CC-A7IK-01A	0 years, male, asian, stage:Stage IIIA, dead, 262 days	41.6
TCGA-ED-A66X-01A	0 years, male, asian, stage:Stage IIIA, alive, 406 days	41.0
TCGA-2Y-A9GX-01A	0 years, male, white, stage:Stage I, alive, 2442 days	40.6
TCGA-CC-A3MA-01A	0 years, male, asian, stage:Stage IIIA, dead, 303 days	40.0
TCGA-DD-A1EC-01A	0 years, female, white, stage:Stage I, alive, 602 days	39.8
TCGA-DD-A4NV-01A	0 years, male, white, stage:Stage IIIA, alive, 2398 days	39.6
TCGA-EP-A2KC-01A	0 years, male, black or african american, stage:Stage I, dead, 19 days	39.2
TCGA-FV-A3I1-01A	0 years, female, white, stage:Stage II, dead, 247 days	39.2
TCGA-DD-A39W-01A	0 years, female, white, stage:Stage III, dead, 827 days	39.2
TCGA-EP-A26S-01A	0 years, male, white, stage:Stage I, alive, 608 days	38.9
TCGA-FV-A3R3-01A	0 years, female, white, stage:Stage I, dead, 366 days	38.8
TCGA-ZP-A9D0-01A	0 years, female, black or african american, stage:'--, alive, 1091 days	38.2
TCGA-DD-AADW-01A	0 years, male, asian, stage:Stage I, alive, 587 days	38.2
TCGA-DD-AADB-01A	0 years, male, asian, stage:Stage I, alive, 1242 days	38.0
TCGA-UB-A7MA-01A	0 years, female, white, stage:Stage II, alive, 848 days	37.2
TCGA-ZP-A9D1-01A	0 years, female, white, stage:'--, alive, 21 days	37.2
TCGA-DD-AAVW-01A	0 years, male, asian, stage:Stage I, alive, 2317 days	37.1
TCGA-UB-AA0U-01A	0 years, male, white, stage:Stage II, alive, 327 days	37.1
TCGA-DD-A1EB-01A	0 years, female, stage:Stage I, alive, 2017 days	36.9
TCGA-CC-5258-01A	0 years, male, asian, stage:Stage II, dead, 129 days	36.6
TCGA-ZP-A9D4-01A	0 years, female, white, stage:'--, alive, 395 days	36.4
TCGA-DD-A4ND-01A	0 years, female, white, stage:Stage I, alive, 2746 days	36.1
TCGA-DD-AADY-01A	0 years, female, asian, stage:Stage I, alive, 555 days	35.9
TCGA-2Y-A9GV-01A	0 years, female, white, stage:Stage I, dead, 2532 days	35.8
TCGA-DD-A4NI-01A	0 years, male, white, stage:Stage II, alive, 816 days	35.1
TCGA-BC-A10U-01A	0 years, male, white, stage:'--, dead, 837 days	35.0
TCGA-BC-A112-01A	0 years, male, white, stage:'--, dead, 153 days	34.6
TCGA-ZP-A9CV-01A	0 years, male, white, stage:'--, dead, 1088 days	34.5
TCGA-2Y-A9H2-01A	0 years, female, white, stage:Stage I, alive, 1731 days	34.3
TCGA-ED-A7XP-01A	0 years, female, asian, stage:Stage II, alive, 400 days	34.2
TCGA-DD-AADD-01A	0 years, male, asian, stage:Stage I, alive, 1231 days	33.7
TCGA-DD-A4NJ-01A	0 years, female, white, stage:Stage II, alive, 928 days	33.1
TCGA-DD-A1EH-01A	0 years, male, white, stage:Stage III, alive, 1495 days	33.1
TCGA-DD-A1EA-01A	0 years, male, asian, stage:Stage II, alive, 2415 days	32.8
TCGA-ZP-A9CZ-01A	0 years, male, asian, stage:'--, alive, 706 days	32.2
TCGA-DD-A3A4-01A	0 years, male, white, stage:Stage IIIA, dead, 612 days	32.0
TCGA-ED-A4XI-01A	0 years, male, asian, stage:Stage II, alive, 819 days	31.9
TCGA-DD-AADV-01A	0 years, male, asian, stage:Stage I, alive, 574 days	31.7
TCGA-UB-AA0V-01A	0 years, female, white, stage:Stage I, alive, 314 days	31.7
TCGA-DD-AAVZ-01A	0 years, male, asian, stage:Stage I, alive, 1900 days	31.1
TCGA-DD-A4NS-01A	0 years, female, white, stage:Stage I, dead, 2456 days	30.7
TCGA-ED-A7PX-01A	0 years, female, asian, stage:Stage II, alive, 6 days	30.5
TCGA-DD-AACU-01A	0 years, male, asian, stage:Stage I, alive, 1567 days	30.3
TCGA-G3-A7M9-01A	0 years, male, white, stage:Stage IIIB, dead, 56 days	30.2
TCGA-DD-AACA-01A	0 years, male, asian, stage:Stage I, alive, 2301 days	30.1
TCGA-2Y-A9HB-01A	0 years, male, stage:Stage I, alive, 260 days	30.0
TCGA-DD-AACK-01A	0 years, male, asian, stage:Stage I, alive, 9 days	29.9
TCGA-XR-A8TD-01A	0 years, female, white, stage:Stage IIIB, alive, 1030 days	29.6
TCGA-DD-A11D-01A	0 years, female, white, stage:Stage I, dead, 1560 days	29.4
TCGA-DD-A73A-01A	0 years, male, white, stage:Stage I, alive, 728 days	29.2
TCGA-WX-AA46-01A	0 years, male, white, stage:Stage II, alive, 756 days	29.0
TCGA-ED-A627-01A	0 years, male, white, stage:Stage I, alive, 423 days	28.9
TCGA-DD-AADC-01A	0 years, male, asian, stage:Stage I, dead, 425 days	28.3
TCGA-2Y-A9H9-01A	0 years, male, white, stage:Stage I, alive, 697 days	28.2
TCGA-DD-A4NO-01A	0 years, male, white, stage:Stage I, alive, 2245 days	28.1
TCGA-BC-A216-01A	0 years, female, white, stage:Stage IIIA, alive, 1351 days	27.9
TCGA-G3-A5SJ-01A	0 years, male, white, stage:Stage I, alive, 698 days	27.9
TCGA-5C-A9VH-01A	0 years, male, white, stage:Stage I, alive, 322 days	27.6
TCGA-2Y-A9GU-01A	0 years, female, white, stage:Stage I, alive, 1939 days	27.1
TCGA-BC-A10Y-01A	0 years, male, white, stage:'--, dead, 711 days	27.1
TCGA-RC-A6M5-01A	0 years, female, white, stage:Stage IVA, alive, 15 days	26.9
TCGA-CC-A8HV-01A	0 years, female, asian, stage:Stage II, dead, 279 days	26.7
TCGA-2Y-A9H5-01A	0 years, female, white, stage:Stage I, dead, 555 days	26.4
TCGA-BC-A10X-01A	0 years, female, white, stage:Stage IIIA, dead, 770 days	26.3
TCGA-BC-A10R-01A	0 years, female, white, stage:'--, dead, 308 days	26.2
TCGA-BD-A3EP-01A	0 years, female, black or african american, stage:Stage I, alive, 409 days	26.2
TCGA-ZS-A9CF-01A	0 years, male, white, stage:Stage II, alive, 2412 days	26.1
TCGA-WX-AA44-01A	0 years, female, white, stage:Stage I, alive, 615 days	26.0
TCGA-LG-A6GG-01A	0 years, female, white, stage:Stage II, alive, 387 days	25.9
TCGA-DD-A114-01A	0 years, male, black or african american, stage:Stage II, dead, 1149 days	25.8
TCGA-ZP-A9CY-01A	0 years, female, white, stage:'--, alive, 782 days	25.7
TCGA-2Y-A9GZ-01A	0 years, female, white, stage:Stage II, dead, 848 days	25.7
TCGA-CC-A7IH-01A	0 years, male, asian, stage:Stage IIIA, alive, 365 days	25.7
TCGA-DD-A11B-01A	0 years, male, white, stage:Stage I, dead, 14 days	25.6
TCGA-3K-AAZ8-01A	0 years, male, black or african american, stage:Stage IIIB, alive, 396 days	25.5
TCGA-2Y-A9GT-01A	0 years, male, white, stage:Stage I, dead, 1624 days	25.5
TCGA-G3-A3CH-01A	0 years, male, asian, stage:Stage IIIA, alive, 780 days	25.2
TCGA-DD-A4NB-01A	0 years, male, white, stage:Stage I, alive, 989 days	24.9
TCGA-DD-A73D-01A	0 years, female, white, stage:Stage II, alive, 693 days	24.9
TCGA-RC-A7SH-01A	0 years, male, asian, stage:Stage II, alive, 468 days	24.7
TCGA-G3-A3CG-01A	0 years, male, white, stage:Stage I, alive, 673 days	24.7
TCGA-RC-A7SK-01A	0 years, male, asian, stage:Stage I, alive, 472 days	24.7
TCGA-DD-A4NK-01A	0 years, female, white, stage:Stage IIIA, dead, 1210 days	24.6
TCGA-DD-AACH-01A	0 years, male, asian, stage:Stage II, dead, 195 days	24.2
TCGA-YA-A8S7-01A	0 years, male, white, stage:Stage IIIA, dead, 412 days	24.1
TCGA-G3-AAV1-01A	0 years, male, asian, stage:Stage IIIC, dead, 359 days	23.9
TCGA-ED-A7XO-01A	0 years, male, asian, stage:Stage IIIA, alive, 427 days	23.8
TCGA-DD-AAE2-01A	0 years, male, asian, stage:Stage I, alive, 638 days	23.8
TCGA-DD-AACX-01A	0 years, male, asian, stage:Stage II, alive, 170 days	23.7
TCGA-DD-A1EL-01A	0 years, male, black or african american, stage:Stage II, dead, 415 days	23.6
TCGA-UB-A7MD-01A	0 years, male, black or african american, stage:Stage I, dead, 52 days	23.6
TCGA-G3-A6UC-01A	0 years, male, white, stage:Stage IIIB, alive, 671 days	23.3
TCGA-CC-A5UE-01A	0 years, male, asian, stage:Stage IIIB, dead, 272 days	22.9
TCGA-ED-A66Y-01A	0 years, female, asian, stage:Stage IIIA, dead, 296 days	22.7
TCGA-DD-A1EJ-01A	0 years, female, white, stage:Stage IIIC, dead, 1005 days	22.7
TCGA-DD-AAD2-01A	0 years, male, asian, stage:Stage I, alive, 658 days	22.5
TCGA-DD-AAD3-01A	0 years, male, asian, stage:Stage I, alive, 1295 days	22.4
TCGA-G3-A25Y-01A	0 years, female, asian, stage:Stage I, dead, 452 days	22.4
TCGA-DD-A11C-01A	0 years, male, white, stage:Stage I, alive, 662 days	22.4
TCGA-G3-A3CK-01A	0 years, male, asian, stage:Stage I, alive, 585 days	22.2
TCGA-DD-AADP-01A	0 years, male, asian, stage:Stage I, alive, 458 days	22.1
TCGA-DD-AADL-01A	0 years, male, asian, stage:Stage I, alive, 636 days	21.8
TCGA-DD-A1EI-01A	0 years, male, asian, stage:Stage I, alive, 183 days	21.8
TCGA-DD-A4NQ-01A	0 years, male, white, stage:Stage II, dead, 373 days	21.7
TCGA-DD-AAED-01A	0 years, male, asian, stage:Stage I, alive, 763 days	21.6
TCGA-RG-A7D4-01A	0 years, male, black or african american, stage:Stage II, alive, 1098 days	21.5
TCGA-CC-A5UD-01A	0 years, male, asian, stage:Stage IIIA, dead, 304 days	21.4
TCGA-DD-A1EE-01A	0 years, male, white, stage:Stage IIIA, dead, 349 days	21.1
TCGA-DD-AACE-01A	0 years, male, asian, stage:Stage I, alive, 2184 days	21.1
TCGA-RC-A7SB-01A	0 years, male, asian, stage:Stage II, alive, 588 days	20.8
TCGA-2Y-A9GW-01A	0 years, male, white, stage:Stage I, dead, 1271 days	20.8
TCGA-DD-A73F-01A	0 years, female, white, stage:Stage I, alive, 1085 days	20.7
TCGA-FV-A3R2-01A	0 years, male, white, stage:Stage I, dead, 194 days	20.5
TCGA-K7-A5RG-01A	0 years, male, black or african american, stage:Stage I, alive, 519 days	20.1
TCGA-2Y-A9H6-01A	0 years, female, white, stage:Stage I, alive, 357 days	20.1
TCGA-DD-AACQ-01A	0 years, male, asian, stage:Stage II, dead, 432 days	20.0
TCGA-DD-AAVS-01A	0 years, male, asian, stage:Stage I, alive, 1823 days	19.8
TCGA-BC-A10T-01A	0 years, male, white, stage:'--, dead, 837 days	19.8
TCGA-DD-A4NF-01A	0 years, male, white, stage:Stage I, alive, 942 days	19.7
TCGA-DD-AACT-01A	0 years, female, asian, stage:Stage I, alive, 1562 days	19.7
TCGA-DD-AACZ-01A	0 years, female, asian, stage:Stage I, dead, 171 days	19.4
TCGA-CC-A8HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 140 days	19.3
TCGA-CC-A8HU-01A	0 years, female, asian, stage:Stage IIIA, dead, 344 days	19.3
TCGA-DD-AAEI-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	19.3
TCGA-G3-A5SK-01A	0 years, male, white, stage:Stage I, alive, 744 days	19.0
TCGA-DD-AAVX-01A	0 years, male, asian, stage:Stage II, alive, 1718 days	18.9
TCGA-DD-A118-01A	0 years, female, white, stage:Stage II, alive, 3437 days	18.9
TCGA-DD-AAE1-01A	0 years, male, asian, stage:Stage I, alive, 552 days	18.4
TCGA-DD-A4NL-01A	0 years, male, white, stage:Stage I, alive, 1711 days	18.3
TCGA-PD-A5DF-01A	0 years, female, white, stage:Stage IIIB, dead, 639 days	18.2
TCGA-DD-A4NR-01A	0 years, female, white, stage:Stage I, dead, 9 days	18.0
TCGA-DD-AAE0-01A	0 years, female, asian, stage:Stage IIIA, alive, 555 days	18.0
TCGA-DD-AAW1-01A	0 years, male, asian, stage:Stage IIIA, alive, 1989 days	17.9
TCGA-G3-A5SI-01A	0 years, male, asian, stage:Stage II, dead, 768 days	17.9
TCGA-KR-A7K0-01A	0 years, male, white, stage:Stage I, dead, 65 days	17.8
TCGA-DD-AAVV-01A	0 years, male, asian, stage:Stage II, alive, 2455 days	17.7
TCGA-DD-AAE7-01A	0 years, male, asian, stage:Stage I, alive, 644 days	17.7
TCGA-FV-A23B-01A	0 years, female, white, stage:Stage II, dead, 1852 days	17.6
TCGA-FV-A4ZQ-01A	0 years, male, white, stage:Stage I, alive, 12 days	17.5
TCGA-MR-A520-01A	0 years, male, white, stage:Stage I, alive, 229 days	17.3
TCGA-DD-AA3A-01A	0 years, female, white, stage:Stage I, dead, 410 days	17.2
TCGA-ED-A8O5-01A	0 years, female, asian, stage:Stage IIIA, alive, 406 days	17.2
TCGA-G3-A25T-01A	0 years, female, white, stage:Stage IIIA, alive, 1553 days	17.1
TCGA-ZS-A9CE-01A	0 years, female, white, stage:Stage II, alive, 1241 days	17.0
TCGA-DD-AAW0-01A	0 years, male, asian, stage:Stage I, alive, 2015 days	17.0
TCGA-DD-AAEK-01A	0 years, male, asian, stage:Stage II, alive, 1067 days	16.8
TCGA-DD-A4NH-01A	0 years, female, white, stage:Stage IIIB, alive, 917 days	16.8
TCGA-GJ-A6C0-01A	0 years, female, white, stage:Stage II, dead, 31 days	16.5
TCGA-WJ-A86L-01A	0 years, female, white, stage:Stage I, alive, 345 days	16.5
TCGA-BC-A3KF-01A	0 years, female, white, stage:Stage I, alive, 8 days	16.4
TCGA-DD-AAD0-01A	0 years, female, asian, stage:Stage I, alive, 137 days	16.1
TCGA-K7-A5RF-01A	0 years, male, white, stage:Stage I, alive, 631 days	16.0
TCGA-2Y-A9HA-01A	0 years, male, white, stage:Stage II, dead, 36 days	16.0
TCGA-ZS-A9CD-01A	0 years, male, white, stage:Stage II, dead, 1386 days	15.7
TCGA-G3-A3CI-01A	0 years, male, white, stage:Stage I, alive, 180 days	15.7
TCGA-DD-AAD6-01A	0 years, male, asian, stage:Stage IIIA, alive, 672 days	15.6
TCGA-DD-A1ED-01A	0 years, male, white, stage:Stage I, alive, 2301 days	15.5
TCGA-CC-A7IE-01A	0 years, male, asian, stage:Stage IIIA, dead, 217 days	15.4
TCGA-G3-A7M8-01A	0 years, male, asian, stage:Stage I, alive, 430 days	15.4
TCGA-DD-AAD8-01A	0 years, female, asian, stage:Stage I, alive, 1219 days	15.1
TCGA-DD-A73E-01A	0 years, male, white, stage:Stage I, alive, 44 days	15.0
TCGA-DD-AADG-01A	0 years, male, asian, stage:Stage IIIA, alive, 1145 days	14.8
TCGA-BD-A2L6-01A	0 years, male, white, stage:'--, alive, 1363 days	14.8
TCGA-DD-AAE6-01A	0 years, female, asian, stage:Stage I, alive, 141 days	14.5
TCGA-MR-A8JO-01A	0 years, male, white, stage:Stage I, alive, 330 days	14.5
TCGA-BW-A5NO-01A	0 years, male, black or african american, stage:Stage IIIA, alive, 20 days	14.4
TCGA-ED-A5KG-01A	0 years, female, asian, stage:Stage II, alive, 854 days	14.4
TCGA-FV-A2QR-01A	0 years, male, white, stage:Stage I, dead, 581 days	14.4
TCGA-WQ-A9G7-01A	0 years, female, white, stage:'--, alive, 30 days	14.2
TCGA-EP-A2KB-01A	0 years, female, white, stage:Stage I, dead, 596 days	14.1
TCGA-ZS-A9CG-01A	0 years, male, white, stage:Stage II, alive, 341 days	14.1
TCGA-2Y-A9H4-01A	0 years, male, black or african american, stage:Stage I, alive, 1452 days	14.1
TCGA-G3-A25V-01A	0 years, male, white, stage:Stage I, alive, 860 days	14.1
TCGA-RC-A7SF-01A	0 years, male, asian, stage:Stage I, alive, 579 days	14.0
TCGA-NI-A8LF-01A	0 years, male, white, stage:Stage I, alive, 799 days	13.9
TCGA-HP-A5MZ-01A	0 years, male, stage:Stage I, dead, 91 days	13.8
TCGA-BD-A3ER-01A	0 years, male, white, stage:Stage II, alive, 1115 days	13.8
TCGA-EP-A12J-01A	0 years, male, black or african american, stage:Stage I, alive, 570 days	13.7
TCGA-DD-A4NN-01A	0 years, female, white, stage:Stage I, dead, 899 days	13.7
TCGA-BC-A217-01A	0 years, female, white, stage:Stage II, dead, 1397 days	13.5
TCGA-GJ-A3OU-01A	0 years, male, white, stage:Stage I, alive, 879 days	13.5
TCGA-MI-A75G-01A	0 years, male, white, stage:Stage II, alive, 698 days	13.4
TCGA-DD-AAVQ-01A	0 years, male, asian, stage:Stage I, alive, 2728 days	13.3
TCGA-DD-AACF-01A	0 years, male, asian, stage:Stage I, dead, 365 days	13.3
TCGA-4R-AA8I-01A	0 years, male, white, stage:Stage II, dead, 262 days	13.0
TCGA-DD-AAW3-01A	0 years, male, asian, stage:Stage I, alive, 1633 days	13.0
TCGA-ED-A7PY-01A	0 years, female, asian, stage:Stage II, alive, 390 days	13.0
TCGA-DD-AACP-01A	0 years, male, asian, stage:Stage I, alive, 415 days	12.9
TCGA-G3-AAV4-01A	0 years, female, white, stage:Stage I, dead, 27 days	12.8
TCGA-CC-A9FS-01A	0 years, male, asian, stage:Stage II, alive, 211 days	12.7
TCGA-G3-A5SM-01A	0 years, male, white, stage:Stage II, alive, 520 days	12.7
TCGA-DD-A4NG-01A	0 years, male, white, stage:Stage IIIA, dead, 802 days	12.7
TCGA-G3-A7M7-01A	0 years, male, white, stage:Stage I, alive, 361 days	12.6
TCGA-5R-AA1D-01A	0 years, female, white, stage:Stage IIIA, alive, 449 days	12.6
TCGA-DD-A115-01A	0 years, male, white, stage:Stage IIIA, dead, 2542 days	12.5
TCGA-DD-AADA-01A	0 years, female, asian, stage:Stage I, alive, 1233 days	12.4
TCGA-CC-A1HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 101 days	12.3
TCGA-KR-A7K2-01A	0 years, male, white, stage:Stage I, alive, 829 days	12.2
TCGA-LG-A9QD-01A	0 years, male, white, stage:Stage IIIA, alive, 366 days	12.1
TCGA-DD-AAEA-01A	0 years, male, asian, stage:Stage I, alive, 575 days	12.1
TCGA-5R-AAAM-01A	0 years, female, white, stage:Stage II, dead, 46 days	12.1
TCGA-RC-A6M6-01A	0 years, male, white, stage:Stage II, alive, 9 days	11.9
TCGA-BC-A10S-01A	0 years, male, white, stage:'--, dead, 1423 days	11.6
TCGA-UB-A7ME-01A	0 years, male, asian, stage:Stage I, alive, 486 days	11.6
TCGA-G3-A5SL-01A	0 years, male, white, stage:Stage II, alive, 621 days	11.5
TCGA-CC-A7IL-01A	0 years, male, asian, stage:Stage IIIA, dead, 278 days	11.4
TCGA-G3-AAV5-01A	0 years, male, white, stage:Stage II, alive, 354 days	11.4
TCGA-2Y-A9H0-01A	0 years, male, white, stage:Stage IIIA, alive, 3675 days	11.2
TCGA-RC-A7S9-01A	0 years, female, asian, stage:Stage I, alive, 640 days	11.1
TCGA-HP-A5N0-01A	0 years, female, stage:'--, dead, 752 days	11.1
TCGA-DD-A1EG-01A	0 years, male, white, stage:Stage I, dead, 1372 days	11.1
TCGA-DD-A1EK-01A	0 years, female, white, stage:Stage IVB, dead, 558 days	10.8
TCGA-FV-A2QQ-01A	0 years, male, white, stage:Stage I, alive, 729 days	10.6
TCGA-2Y-A9GY-01A	0 years, female, white, stage:Stage II, dead, 757 days	10.4
TCGA-DD-A3A2-01A	0 years, female, white, stage:Stage I, dead, 2131 days	10.3
TCGA-ED-A8O6-01A	0 years, female, asian, stage:Stage IIIA, dead, 56 days	10.3
TCGA-DD-AAC8-01A	0 years, male, asian, stage:Stage I, dead, 16 days	10.3
TCGA-DD-AAVR-01A	0 years, male, asian, stage:Stage I, alive, 2513 days	10.2
TCGA-CC-A3MC-01A	0 years, male, asian, stage:Stage IIIA, alive, 363 days	10.2
TCGA-DD-A39Y-01A	0 years, male, asian, stage:Stage I, dead, 171 days	10.2
TCGA-T1-A6J8-01A	0 years, male, white, stage:'--, alive, 23 days	10.1
TCGA-DD-AAEG-01A	0 years, female, asian, stage:Stage I, alive, 719 days	10.1
TCGA-5R-AA1C-01A	0 years, male, white, stage:Stage II, alive, 520 days	10.1
TCGA-KR-A7K8-01A	0 years, male, stage:Stage I, alive, 906 days	10.0
TCGA-NI-A4U2-01A	0 years, male, white, stage:Stage IIIA, dead, 1791 days	9.9
TCGA-MI-A75I-01A	0 years, male, black or african american, stage:'--, alive, 630 days	9.8
TCGA-ED-A459-01A	0 years, male, asian, stage:Stage II, alive, 910 days	9.8
TCGA-CC-A5UC-01A	0 years, male, asian, stage:Stage IIIA, dead, 347 days	9.6
TCGA-O8-A75V-01A	0 years, male, stage:Stage I, alive, 538 days	9.6
TCGA-DD-AAW2-01A	0 years, male, asian, stage:Stage I, alive, 1855 days	9.6
TCGA-K7-A6G5-01A	0 years, male, white, stage:Stage I, alive, 512 days	9.4
TCGA-2Y-A9H8-01A	0 years, female, white, stage:'--, dead, 633 days	9.4
TCGA-DD-AACJ-01A	0 years, male, asian, stage:Stage II, alive, 2102 days	9.3
TCGA-EP-A2KA-01A	0 years, female, white, stage:Stage IIIA, dead, 627 days	9.3
TCGA-UB-A7MF-01A	0 years, male, white, stage:Stage IIIA, dead, 214 days	9.2
TCGA-CC-A7IF-01A	0 years, male, asian, stage:Stage IIIA, dead, 649 days	8.8
TCGA-DD-A3A5-01A	0 years, female, white, stage:Stage III, dead, 3125 days	8.8
TCGA-DD-AADI-01A	0 years, female, asian, stage:Stage I, alive, 1085 days	8.5
TCGA-CC-5262-01A	0 years, male, asian, stage:Stage IIIC, dead, 103 days	8.5
TCGA-DD-A3A9-01A	0 years, female, white, stage:Stage IVB, dead, 931 days	8.5
TCGA-BC-A110-01A	0 years, female, black or african american, stage:'--, dead, 2116 days	8.4
TCGA-DD-AACW-01A	0 years, male, asian, stage:Stage I, alive, 1424 days	8.4
TCGA-G3-A25Z-01A	0 years, male, asian, stage:Stage I, alive, 655 days	8.3
TCGA-DD-A4NP-01A	0 years, male, white, stage:Stage I, alive, 3308 days	8.2
TCGA-CC-A7IJ-01A	0 years, male, asian, stage:Stage II, alive, 382 days	8.0
TCGA-DD-AAD5-01A	0 years, male, asian, stage:Stage I, alive, 1345 days	8.0
TCGA-MI-A75E-01A	0 years, male, white, stage:Stage IIIC, alive, 507 days	7.9
TCGA-G3-AAV2-01A	0 years, male, white, stage:Stage I, alive, 372 days	7.9
TCGA-DD-AADK-01A	0 years, female, asian, stage:Stage II, alive, 1049 days	7.8
TCGA-DD-AACY-01A	0 years, male, asian, stage:Stage I, alive, 1450 days	7.7
TCGA-2Y-A9H7-01A	0 years, female, white, stage:Stage I, alive, 1168 days	7.7
TCGA-MI-A75C-01A	0 years, male, white, stage:Stage I, alive, 291 days	7.7
TCGA-FV-A496-01A	0 years, female, white, stage:Stage I, alive, 10 days	7.4
TCGA-G3-AAV3-01A	0 years, female, white, stage:Stage II, alive, 412 days	7.4
TCGA-CC-A9FW-01A	0 years, male, asian, stage:Stage IIIA, alive, 248 days	7.4
TCGA-DD-AAEE-01A	0 years, male, asian, stage:Stage I, alive, 810 days	7.4
TCGA-RC-A6M4-01A	0 years, female, white, stage:Stage IIIA, alive, 22 days	7.3
TCGA-DD-A3A8-01A	0 years, male, white, stage:Stage II, dead, 11 days	7.0
TCGA-WX-AA47-01A	0 years, female, white, stage:Stage IIIA, dead, 556 days	7.0
TCGA-ED-A7PZ-01A	0 years, male, asian, stage:Stage II, alive, 6 days	6.8
TCGA-DD-AAVY-01A	0 years, male, asian, stage:Stage IIIA, alive, 1970 days	6.4
TCGA-5C-AAPD-01A	0 years, male, asian, stage:Stage II, alive, 20 days	6.3
TCGA-CC-A7II-01A	0 years, male, asian, stage:Stage IIIA, alive, 399 days	6.3
TCGA-DD-AAEB-01A	0 years, male, asian, stage:Stage I, alive, 478 days	6.2
TCGA-DD-AAC9-01A	0 years, male, asian, stage:Stage I, alive, 347 days	6.1
TCGA-G3-AAV6-01A	0 years, female, white, stage:Stage IIIA, dead, 65 days	6.0
TCGA-DD-AACG-01A	0 years, male, asian, stage:Stage II, dead, 469 days	5.9
TCGA-DD-AAVP-01A	0 years, male, asian, stage:Stage I, alive, 2752 days	5.8
TCGA-DD-AADR-01A	0 years, male, asian, stage:Stage I, alive, 2028 days	5.6
TCGA-KR-A7K7-01A	0 years, female, white, stage:Stage II, alive, 951 days	5.5
TCGA-DD-AAEH-01A	0 years, male, asian, stage:Stage I, alive, 784 days	5.5
TCGA-DD-AACL-01A	0 years, female, asian, stage:Stage I, dead, 107 days	5.5
TCGA-G3-A7M5-01A	0 years, male, asian, stage:Stage I, alive, 447 days	5.4
TCGA-WQ-AB4B-01A	0 years, male, white, stage:Stage II, alive, 395 days	5.3
TCGA-EP-A3JL-01A	0 years, male, white, stage:Stage I, alive, 303 days	5.3
TCGA-BC-A69I-01A	0 years, male, white, stage:Stage I, alive, 387 days	5.3
TCGA-DD-AADU-01A	0 years, male, asian, stage:Stage II, alive, 554 days	5.2
TCGA-DD-AACC-01A	0 years, male, asian, stage:Stage I, dead, 1685 days	5.2
TCGA-DD-AADJ-01A	0 years, female, asian, stage:Stage I, alive, 1066 days	5.1
TCGA-G3-AAUZ-01A	0 years, male, stage:Stage I, alive, 480 days	5.0
TCGA-CC-A7IG-01A	0 years, male, asian, stage:Stage II, dead, 299 days	5.0
TCGA-DD-A116-01A	0 years, male, asian, stage:Stage IIIA, dead, 1622 days	5.0
TCGA-DD-AADM-01A	0 years, male, asian, stage:Stage II, dead, 12 days	5.0
TCGA-G3-AAV0-01A	0 years, male, asian, stage:Stage I, alive, 476 days	4.9
TCGA-FV-A495-01A	0 years, female, white, stage:Stage II, alive, 1 days	4.8
TCGA-EP-A3RK-01A	0 years, male, white, stage:Stage IIIA, alive, 363 days	4.6
TCGA-BC-A69H-01A	0 years, male, white, stage:Stage II, alive, 444 days	4.6
TCGA-2Y-A9H3-01A	0 years, male, white, stage:Stage II, alive, 1516 days	4.4
TCGA-DD-AACO-01A	0 years, male, asian, stage:Stage I, alive, 1876 days	4.4
TCGA-DD-AAE4-01A	0 years, female, asian, stage:Stage I, alive, 608 days	4.0
TCGA-DD-AAE9-01A	0 years, male, asian, stage:Stage I, alive, 722 days	4.0
TCGA-CC-A3M9-01A	0 years, male, asian, stage:Stage IIIA, dead, 300 days	3.9
TCGA-DD-AADO-01A	0 years, male, asian, stage:Stage I, alive, 453 days	3.8
TCGA-G3-A3CJ-01A	0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days	3.7
TCGA-DD-AADF-01A	0 years, female, asian, stage:Stage I, dead, 115 days	3.7
TCGA-BC-A5W4-01A	0 years, male, white, stage:Stage IIIA, dead, 547 days	3.7
TCGA-DD-A39X-01A	0 years, female, white, stage:Stage I, dead, 1694 days	3.7
TCGA-MI-A75H-01A	0 years, male, white, stage:'--, alive, 747 days	3.4
TCGA-G3-A25X-01A	0 years, male, asian, stage:Stage II, alive, 1779 days	3.4
TCGA-DD-AADQ-01A	0 years, male, asian, stage:Stage II, alive, 436 days	3.3
TCGA-DD-AACB-01A	0 years, female, asian, stage:Stage I, alive, 2324 days	3.1
TCGA-DD-AACI-01A	0 years, male, asian, stage:Stage II, alive, 1618 days	3.1
TCGA-CC-A123-01A	0 years, female, asian, stage:Stage IIIA, alive, 219 days	3.0
TCGA-DD-AAVU-01A	0 years, male, asian, stage:Stage II, alive, 2202 days	3.0
TCGA-ES-A2HT-01A	0 years, male, black or african american, stage:Stage I, dead, 438 days	3.0
TCGA-DD-AAE3-01A	0 years, male, asian, stage:Stage I, alive, 566 days	2.9
TCGA-DD-A3A7-01A	0 years, male, stage:Stage IIIB, dead, 419 days	2.9
TCGA-DD-A39V-01A	0 years, male, white, stage:Stage II, dead, 643 days	2.8
TCGA-DD-A3A3-01A	0 years, male, asian, stage:Stage I, dead, 535 days	2.6
TCGA-DD-A119-01A	0 years, male, asian, stage:Stage IV, dead, 223 days	2.6
TCGA-DD-A73G-01A	0 years, female, white, stage:Stage I, alive, 3478 days	2.5
TCGA-2Y-A9H1-01A	0 years, male, white, stage:Stage I, dead, 1229 days	2.5
TCGA-DD-A3A1-01A	0 years, male, stage:Stage IIIA, dead, 233 days	2.4
TCGA-FV-A4ZP-01A	0 years, male, white, stage:Stage IIIA, dead, 2486 days	2.4
TCGA-G3-A25S-01A	0 years, male, white, stage:Stage I, dead, 416 days	2.3
TCGA-DD-AADS-01A	0 years, male, asian, stage:Stage I, alive, 474 days	2.3
TCGA-DD-AACD-01A	0 years, male, asian, stage:Stage I, dead, 381 days	1.8
TCGA-ES-A2HS-01A	0 years, male, white, stage:Stage I, dead, 688 days	1.7
TCGA-CC-5259-01A	0 years, female, asian, stage:Stage IIIC, alive, 250 days	1.1
TCGA-DD-A39Z-01A	0 years, female, stage:Stage II, dead, 601 days	1.0
TCGA-DD-A3A6-01A	0 years, female, white, stage:Stage II, dead, 3258 days	1.0
TCGA-DD-AADN-01A	0 years, male, asian, stage:Stage I, alive, 898 days	0.8
Show allShow less

LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter plotⁱ The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red. The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off". Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation. Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient. & Survival analysisⁱ Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.

LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)

Number of samples

330

Samples

Sample ID	Sample type	nRPX
937	Tumor	0.8
131	Tumor	0.8
425	Tumor	0.8
663	Tumor	0.6
743	Tumor	0.6
497	Tumor	0.6
221	Tumor	0.6
227	Tumor	0.5
925	Tumor	0.5
387	Tumor	0.5
353	Tumor	0.5
473	Tumor	0.5
431	Tumor	0.4
745	Tumor	0.4
363	Tumor	0.4
755	Tumor	0.4
445	Tumor	0.4
967	Tumor	0.4
1021	Tumor	0.4
487	Tumor	0.4
777	Tumor	0.4
341	Tumor	0.4
285	Tumor	0.4
554	Normal	0.4
865	Tumor	0.4
746	Normal	0.4
553	Tumor	0.3
786	Normal	0.3
147	Tumor	0.3
1022	Normal	0.3
636	Normal	0.3
944	Normal	0.3
951	Tumor	0.3
737	Tumor	0.3
665	Tumor	0.3
984	Normal	0.3
277	Tumor	0.3
518	Normal	0.3
533	Tumor	0.3
954	Normal	0.3
1046	Normal	0.3
968	Normal	0.3
957	Tumor	0.3
1028	Normal	0.3
698	Normal	0.3
477	Tumor	0.3
723	Tumor	0.3
778	Normal	0.3
527	Tumor	0.3
617	Tumor	0.3
714	Normal	0.3
955	Tumor	0.3
924	Normal	0.3
616	Normal	0.3
462	Normal	0.3
271	Tumor	0.3
484	Normal	0.3
858	Normal	0.3
1014	Normal	0.3
472	Normal	0.3
298	Normal	0.3
538	Normal	0.3
1015	Tumor	0.3
867	Tumor	0.3
327	Tumor	0.3
488	Normal	0.3
448	Normal	0.3
953	Tumor	0.3
695	Tumor	0.3
546	Normal	0.2
824	Normal	0.2
563	Tumor	0.2
313	Tumor	0.2
344	Normal	0.2
958	Normal	0.2
528	Normal	0.2
868	Normal	0.2
964	Normal	0.2
664	Normal	0.2
498	Normal	0.2
416	Normal	0.2
534	Normal	0.2
1026	Normal	0.2
728	Normal	0.2
818	Normal	0.2
738	Normal	0.2
756	Normal	0.2
742	Normal	0.2
436	Normal	0.2
618	Normal	0.2
641	Tumor	0.2
482	Normal	0.2
218	Normal	0.2
912	Normal	0.2
722	Normal	0.2
286	Normal	0.2
1045	Tumor	0.2
866	Normal	0.2
918	Normal	0.2
975	Tumor	0.2
686	Normal	0.2
642	Normal	0.2
1032	Normal	0.2
851	Tumor	0.2
873	Tumor	0.2
863	Tumor	0.2
232	Normal	0.2
938	Normal	0.2
526	Normal	0.2
785	Tumor	0.2
635	Tumor	0.2
1016	Normal	0.2
878	Normal	0.2
696	Normal	0.2
982	Normal	0.2
884	Normal	0.2
922	Normal	0.2
881	Tumor	0.2
113	Tumor	0.2
568	Normal	0.2
721	Tumor	0.2
1042	Normal	0.2
331	Tumor	0.2
952	Normal	0.2
483	Tumor	0.2
926	Normal	0.1
474	Normal	0.1
864	Normal	0.1
1043	Tumor	0.1
411	Tumor	0.1
1044	Normal	0.1
862	Normal	0.1
716	Normal	0.1
943	Tumor	0.1
921	Tumor	0.1
966	Normal	0.1
427	Tumor	0.1
874	Normal	0.1
412	Normal	0.1
267	Tumor	0.1
744	Normal	0.1
128	Normal	0.1
627	Tumor	0.1
628	Normal	0.1
882	Normal	0.1
426	Normal	0.1
342	Normal	0.1
494	Normal	0.1
648	Normal	0.1
471	Tumor	0.1
395	Tumor	0.1
112	Tumor	0.1
464	Normal	0.1
228	Normal	0.1
572	Normal	0.1
537	Tumor	0.1
558	Normal	0.1
396	Normal	0.1
361	Tumor	0.1
415	Tumor	0.1
816	Normal	0.1
452	Normal	0.1
852	Normal	0.1
916	Normal	0.1
132	Normal	0.1
148	Normal	0.1
1031	Tumor	0.1
815	Tumor	0.1
114	Normal	0.1
514	Normal	0.1
376	Normal	0.1
297	Tumor	0.1
392	Normal	0.1
284	Normal	0.1
137	Tumor	0.1
443	Tumor	0.1
413	Tumor	0.1
524	Normal	0.1
883	Tumor	0.1
278	Normal	0.1
328	Normal	0.1
356	Normal	0.1
424	Normal	0.1
461	Tumor	0.1
976	Normal	0.1
111	Normal	0.1
222	Normal	0.1
258	Normal	0.1
564	Normal	0.1
516	Normal	0.1
956	Normal	0.1
456	Normal	0.1
142	Normal	0.1
196	Normal	0.1
355	Tumor	0.1
666	Normal	0.1
492	Normal	0.1
364	Normal	0.1
368	Normal	0.1
447	Tumor	0.1
314	Normal	0.1
268	Normal	0.1
312	Normal	0.1
478	Normal	0.1
647	Tumor	0.1
741	Tumor	0.1
662	Normal	0.1
574	Normal	0.0
672	Normal	0.0
981	Tumor	0.0
186	Normal	0.0
358	Normal	0.0
414	Normal	0.0
362	Normal	0.0
231	Tumor	0.0
386	Normal	0.0
1013	Tumor	0.0
352	Normal	0.0
468	Normal	0.0
214	Normal	0.0
357	Tumor	0.0
162	Normal	0.0
428	Normal	0.0
217	Tumor	0.0
422	Normal	0.0
394	Normal	0.0
388	Normal	0.0
923	Tumor	0.0
914	Normal	0.0
384	Normal	0.0
383	Tumor	0.0
145	Tumor	0.0
136	Normal	0.0
446	Normal	0.0
536	Normal	0.0
978	Normal	0.0
272	Normal	0.0
138	Normal	0.0
124	Normal	0.0
463	Tumor	0.0
423	Tumor	0.0
223	Tumor	0.0
432	Normal	0.0
141	Tumor	0.0
172	Normal	0.0
697	Tumor	0.0
332	Normal	0.0
963	Tumor	0.0
465	Tumor	0.0
354	Normal	0.0
685	Tumor	0.0
515	Tumor	0.0
365	Tumor	-0.1
713	Tumor	-0.1
915	Tumor	-0.1
466	Normal	-0.1
1027	Tumor	-0.1
211	Tumor	-0.1
212	Normal	-0.1
523	Tumor	-0.1
451	Tumor	-0.1
187	Tumor	-0.1
421	Tumor	-0.1
262	Normal	-0.1
366	Normal	-0.1
444	Normal	-0.1
391	Tumor	-0.1
224	Normal	-0.1
455	Tumor	-0.1
146	Normal	-0.1
185	Tumor	-0.1
571	Tumor	-0.1
493	Tumor	-0.1
191	Tumor	-0.1
434	Normal	-0.1
823	Tumor	-0.1
126	Normal	-0.1
615	Tumor	-0.2
913	Tumor	-0.2
435	Tumor	-0.2
567	Tumor	-0.2
965	Tumor	-0.2
433	Tumor	-0.2
261	Tumor	-0.2
513	Tumor	-0.2
817	Tumor	-0.2
814	Normal	-0.2
977	Tumor	-0.2
188	Normal	-0.2
525	Tumor	-0.2
351	Tumor	-0.2
911	Tumor	-0.2
724	Normal	-0.2
192	Normal	-0.3
857	Tumor	-0.3
861	Tumor	-0.3
1025	Tumor	-0.3
671	Tumor	-0.3
715	Tumor	-0.3
983	Tumor	-0.3
727	Tumor	-0.3
161	Tumor	-0.3
1041	Tumor	-0.3
375	Tumor	-0.3
813	Tumor	-0.3
535	Tumor	-0.4
127	Tumor	-0.4
545	Tumor	-0.4
393	Tumor	-0.4
311	Tumor	-0.4
135	Tumor	-0.4
877	Tumor	-0.4
343	Tumor	-0.4
917	Tumor	-0.5
195	Tumor	-0.5
467	Tumor	-0.5
573	Tumor	-0.5
385	Tumor	-0.5
257	Tumor	-0.5
517	Tumor	-0.5
123	Tumor	-0.6
367	Tumor	-0.6
125	Tumor	-0.6
557	Tumor	-0.6
171	Tumor	-0.7
491	Tumor	-0.7
213	Tumor	-0.7
283	Tumor	-0.8
661	Tumor	-0.9
481	Tumor	-1.3
Show allShow less

LIVER CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	HPA030212	HPA030213	HPA030214	HPA030215	CAB013496
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Cholangiocarcinoma
Carcinoma, Hepatocellular, NOS