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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
48.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
43.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
39.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
38.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
37.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
33.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
32.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
30.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
30.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
30.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
28.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
28.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
22.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.8
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
57.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
28.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
26.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
937
Tumor
0.7
815
Tumor
0.5
147
Tumor
0.5
951
Tumor
0.5
1028
Normal
0.4
954
Normal
0.4
471
Tumor
0.4
558
Normal
0.4
921
Tumor
0.4
221
Tumor
0.4
1022
Normal
0.4
744
Normal
0.4
271
Tumor
0.4
672
Normal
0.4
444
Normal
0.4
124
Normal
0.4
354
Normal
0.4
112
Tumor
0.4
384
Normal
0.4
123
Tumor
0.3
721
Tumor
0.3
131
Tumor
0.3
723
Tumor
0.3
642
Normal
0.3
478
Normal
0.3
778
Normal
0.3
745
Tumor
0.3
817
Tumor
0.3
746
Normal
0.3
538
Normal
0.3
728
Normal
0.3
298
Normal
0.3
641
Tumor
0.3
431
Tumor
0.3
554
Normal
0.3
524
Normal
0.3
553
Tumor
0.3
352
Normal
0.3
878
Normal
0.3
925
Tumor
0.3
1021
Tumor
0.3
968
Normal
0.3
451
Tumor
0.3
342
Normal
0.3
278
Normal
0.3
714
Normal
0.3
344
Normal
0.3
572
Normal
0.3
952
Normal
0.3
696
Normal
0.3
616
Normal
0.3
574
Normal
0.3
816
Normal
0.3
214
Normal
0.3
327
Tumor
0.3
663
Tumor
0.3
923
Tumor
0.3
498
Normal
0.3
924
Normal
0.3
1044
Normal
0.3
958
Normal
0.3
114
Normal
0.3
536
Normal
0.3
434
Normal
0.3
392
Normal
0.3
975
Tumor
0.3
944
Normal
0.3
984
Normal
0.3
492
Normal
0.3
468
Normal
0.3
664
Normal
0.3
456
Normal
0.3
823
Tumor
0.3
647
Tumor
0.2
146
Normal
0.2
966
Normal
0.2
881
Tumor
0.2
852
Normal
0.2
955
Tumor
0.2
1026
Normal
0.2
867
Tumor
0.2
218
Normal
0.2
564
Normal
0.2
716
Normal
0.2
368
Normal
0.2
396
Normal
0.2
563
Tumor
0.2
864
Normal
0.2
526
Normal
0.2
918
Normal
0.2
824
Normal
0.2
477
Tumor
0.2
224
Normal
0.2
448
Normal
0.2
976
Normal
0.2
142
Normal
0.2
882
Normal
0.2
138
Normal
0.2
268
Normal
0.2
742
Normal
0.2
818
Normal
0.2
666
Normal
0.2
738
Normal
0.2
228
Normal
0.2
662
Normal
0.2
636
Normal
0.2
425
Tumor
0.2
628
Normal
0.2
1014
Normal
0.2
786
Normal
0.2
353
Tumor
0.2
916
Normal
0.2
1042
Normal
0.2
777
Tumor
0.2
914
Normal
0.2
866
Normal
0.2
443
Tumor
0.2
956
Normal
0.2
446
Normal
0.2
192
Normal
0.2
126
Normal
0.2
568
Normal
0.2
452
Normal
0.2
648
Normal
0.2
474
Normal
0.2
527
Tumor
0.2
132
Normal
0.2
858
Normal
0.2
386
Normal
0.2
363
Tumor
0.2
1032
Normal
0.2
617
Tumor
0.2
362
Normal
0.2
528
Normal
0.2
922
Normal
0.2
722
Normal
0.2
686
Normal
0.2
618
Normal
0.2
412
Normal
0.2
963
Tumor
0.2
128
Normal
0.2
141
Tumor
0.2
488
Normal
0.2
695
Tumor
0.2
756
Normal
0.2
395
Tumor
0.2
328
Normal
0.2
874
Normal
0.2
862
Normal
0.2
436
Normal
0.1
1046
Normal
0.1
222
Normal
0.1
284
Normal
0.1
286
Normal
0.1
1016
Normal
0.1
1015
Tumor
0.1
518
Normal
0.1
311
Tumor
0.1
472
Normal
0.1
938
Normal
0.1
148
Normal
0.1
741
Tumor
0.1
312
Normal
0.1
755
Tumor
0.1
421
Tumor
0.1
873
Tumor
0.1
883
Tumor
0.1
698
Normal
0.1
232
Normal
0.1
366
Normal
0.1
957
Tumor
0.1
912
Normal
0.1
196
Normal
0.1
383
Tumor
0.1
111
Normal
0.1
546
Normal
0.1
376
Normal
0.1
426
Normal
0.1
466
Normal
0.1
977
Tumor
0.1
861
Tumor
0.1
964
Normal
0.1
136
Normal
0.1
388
Normal
0.1
978
Normal
0.1
1031
Tumor
0.1
188
Normal
0.1
358
Normal
0.1
926
Normal
0.1
186
Normal
0.1
627
Tumor
0.1
332
Normal
0.1
416
Normal
0.1
364
Normal
0.1
145
Tumor
0.1
724
Normal
0.1
356
Normal
0.1
884
Normal
0.1
432
Normal
0.1
464
Normal
0.1
172
Normal
0.1
943
Tumor
0.1
494
Normal
0.1
851
Tumor
0.1
534
Normal
0.1
435
Tumor
0.1
487
Tumor
0.1
365
Tumor
0.1
212
Normal
0.1
137
Tumor
0.1
868
Normal
0.1
661
Tumor
0.1
514
Normal
0.1
258
Normal
0.1
217
Tumor
0.0
455
Tumor
0.0
113
Tumor
0.0
262
Normal
0.0
185
Tumor
0.0
982
Normal
0.0
394
Normal
0.0
343
Tumor
0.0
313
Tumor
0.0
516
Normal
0.0
413
Tumor
0.0
484
Normal
0.0
911
Tumor
0.0
355
Tumor
0.0
272
Normal
0.0
367
Tumor
0.0
533
Tumor
0.0
415
Tumor
0.0
314
Normal
0.0
465
Tumor
0.0
462
Normal
0.0
571
Tumor
0.0
423
Tumor
0.0
191
Tumor
0.0
447
Tumor
0.0
361
Tumor
0.0
713
Tumor
0.0
391
Tumor
0.0
277
Tumor
0.0
953
Tumor
0.0
515
Tumor
0.0
697
Tumor
0.0
297
Tumor
0.0
414
Normal
0.0
187
Tumor
0.0
1027
Tumor
0.0
162
Normal
0.0
422
Normal
0.0
1043
Tumor
0.0
525
Tumor
0.0
981
Tumor
0.0
915
Tumor
0.0
461
Tumor
0.0
231
Tumor
0.0
424
Normal
-0.1
1045
Tumor
-0.1
482
Normal
-0.1
785
Tumor
-0.1
473
Tumor
-0.1
428
Normal
-0.1
865
Tumor
-0.1
445
Tumor
-0.1
411
Tumor
-0.1
665
Tumor
-0.1
685
Tumor
-0.1
125
Tumor
-0.1
863
Tumor
-0.1
814
Normal
-0.2
857
Tumor
-0.2
433
Tumor
-0.2
567
Tumor
-0.2
467
Tumor
-0.2
357
Tumor
-0.2
387
Tumor
-0.2
983
Tumor
-0.2
967
Tumor
-0.2
483
Tumor
-0.2
211
Tumor
-0.2
227
Tumor
-0.2
195
Tumor
-0.2
127
Tumor
-0.2
283
Tumor
-0.2
341
Tumor
-0.3
463
Tumor
-0.3
813
Tumor
-0.3
385
Tumor
-0.3
557
Tumor
-0.3
135
Tumor
-0.3
223
Tumor
-0.3
497
Tumor
-0.3
671
Tumor
-0.3
917
Tumor
-0.3
267
Tumor
-0.3
427
Tumor
-0.3
491
Tumor
-0.3
493
Tumor
-0.3
1013
Tumor
-0.3
737
Tumor
-0.3
965
Tumor
-0.3
331
Tumor
-0.3
537
Tumor
-0.4
913
Tumor
-0.4
715
Tumor
-0.4
727
Tumor
-0.4
213
Tumor
-0.4
545
Tumor
-0.4
351
Tumor
-0.5
171
Tumor
-0.5
635
Tumor
-0.5
535
Tumor
-0.5
261
Tumor
-0.5
161
Tumor
-0.5
517
Tumor
-0.5
285
Tumor
-0.5
375
Tumor
-0.5
513
Tumor
-0.5
743
Tumor
-0.6
257
Tumor
-0.6
877
Tumor
-0.6
1041
Tumor
-0.7
1025
Tumor
-0.8
481
Tumor
-0.8
615
Tumor
-0.8
393
Tumor
-0.9
523
Tumor
-0.9
573
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
