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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
2687.4
nTPM
HPA Brain:
1855.3
nTPM
GTEx:
2687.4
nTPM
FANTOM5:
1566.9
Scaled Tags Per Million
Pig:
1518.5
nTPM
Mouse:
417.2
nTPM
Allen mouse:
23.2
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1855.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 1297.7
2586
Male, age 75, left hemisphere
2215.7
2828
Female, age 72, unknown
1706.5
2219
Male, age 76, both hemispheres
1332.9
2666
Male, age 74, left hemisphere
1284.7
1833
Male, age 53, unknown
1247.6
1827
Male, age 72, unknown
1146.3
1870
Female, age 42, unknown
1129.8
1830
Male, age 51, unknown
1066.1
2411
Female, age 72, unknown
1061.4
2019
Male, age 18, unknown
786.2
Dorsal raphe nucleus nTPM: 1608.3
2047
Male, age 72, unknown
1803.6
2298
Female, age 72, unknown
1757.5
2016
Female, age 72, unknown
1639.4
2750
Male, age 76, both hemispheres
1489.3
1828
Male, age 53, unknown
1351.6
Inferior colliculus nTPM: 1241.8
1848
Female, age 42, unknown
1274.0
1890
Male, age 53, unknown
1254.3
2097
Female, age 72, unknown
1221.4
2849
Male, age 72, unknown
1217.6
Median raphe nucleus nTPM: 1584.5
2220
Male, age 76, midline
1584.5
Periaquaductal grey, anterior nTPM: 1473.9
1795
Male, age 51, unknown
1591.0
1947
Male, age 18, unknown
1458.5
2502
Female, age 75, unknown
1372.1
Periaquaductal grey, dorsal nTPM: 1326.8
1840
Male, age 53, unknown
1734.8
2850
Male, age 76, both hemispheres
1371.8
2464
Female, age 72, unknown
1135.4
1831
Male, age 72, unknown
1065.2
Periaquaductal grey, lateral nTPM: 1261.6
2140
Male, age 76, both hemispheres
1376.1
2272
Male, age 74, both hemispheres
1240.4
2053
Male, age 18, unknown
1168.3
Pretectal area nTPM: 1218.8
2224
Female, age 72, unknown
1576.2
2825
Male, age 18, unknown
1498.4
1817
Female, age 42, unknown
1445.1
2007
Male, age 72, unknown
1215.2
1944
Female, age 72, unknown
1212.4
1815
Male, age 53, unknown
1195.4
2667
Female, age 75, unknown
1181.5
1816
Male, age 51, unknown
1153.7
2316
Male, age 76, right hemisphere
1123.2
2273
Male, age 74, both hemispheres
971.2
2407
Male, age 75, both hemispheres
834.3
Red nucleus nTPM: 1434.4
2227
Male, age 72, unknown
1780.3
2769
Male, age 72, unknown
1763.3
2503
Female, age 72, unknown
1731.7
2584
Male, age 75, left hemisphere
1580.3
1954
Female, age 42, unknown
1497.4
2725
Female, age 75, unknown
1460.9
1904
Male, age 53, unknown
1455.3
2823
Male, age 76, right hemisphere
1416.5
1821
Female, age 72, unknown
1330.5
1865
Male, age 51, unknown
1287.8
2785
Male, age 18, unknown
955.2
2588
Male, age 74, left hemisphere
954.1
Substantia nigra nTPM: 1855.3
2699
Male, age 18, unknown
3098.2
1916
Female, age 42, unknown
2664.8
1851
Male, age 51, unknown
2241.5
2665
Male, age 74, both hemispheres
1782.6
2590
Female, age 75, unknown
1612.9
2583
Male, age 75, right hemisphere
1579.6
2409
Female, age 72, unknown
1548.3
1889
Female, age 72, unknown
1495.0
2241
Male, age 72, unknown
1349.5
1941
Male, age 53, unknown
1181.0
Superior colliculus nTPM: 1133.6
1796
Male, age 53, unknown
1468.3
2261
Male, age 18, unknown
1305.4
2668
Female, age 75, unknown
1290.8
2087
Female, age 72, unknown
1255.2
2664
Male, age 75, both hemispheres
1189.0
1995
Male, age 72, unknown
1104.7
1839
Male, age 51, unknown
985.3
2587
Male, age 74, left hemisphere
953.6
1913
Female, age 42, unknown
936.3
1895
Male, age 76, right hemisphere
847.1
Ventral tegmental area nTPM: 1522.4
1915
Female, age 42, unknown
2020.4
1942
Male, age 51, unknown
1659.2
2218
Male, age 76, both hemispheres
1538.3
2021
Male, age 53, unknown
1466.9
2410
Female, age 72, unknown
1278.5
2223
Female, age 72, unknown
1171.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2687.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 2687.4
Samples: 139
Max nTPM: 8735.8
Min nTPM: 142.5
Std nTPM: 1562.8
Median nTPM: 2553.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
8735.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
7620.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
7382.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
6747.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
6258.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
5733.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
5561.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
5328.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
5255.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
5253.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
5209.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
5189.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
5152.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
4937.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
4823.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
4732.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
4638.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
4555.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
4481.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
4382.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
4334.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
4275.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
4148.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
4117.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
4056.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
3938.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
3733.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
3709.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
3612.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
3548.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
3450.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
3423.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
3409.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
3390.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
3382.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
3334.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
3300.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
3287.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
3263.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
3240.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
3186.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
3134.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
3126.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
3092.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
3066.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
3013.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
2988.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
2982.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
2975.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
2944.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
2921.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
2920.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
2894.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
2891.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
2853.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
2848.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2842.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
2810.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
2755.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
2728.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2693.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
2668.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
2645.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
2631.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
2629.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
2624.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2598.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
2577.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
2572.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
2553.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
2487.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
2419.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2316.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
2291.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
2282.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
2218.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
2218.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
2175.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
2138.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
2133.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
2115.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2104.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
2098.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
2088.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
2075.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
2028.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
2001.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
1973.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1936.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
1902.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1900.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
1883.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1839.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
1832.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1807.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1788.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1777.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1775.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1708.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1693.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1677.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1671.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1649.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1609.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1584.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
1563.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1535.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1525.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1524.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
1468.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1428.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
1425.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1402.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1392.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1392.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
1350.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1216.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1169.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1147.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1129.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1100.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1082.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1063.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1017.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
964.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
867.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
816.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
804.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
756.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
713.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
693.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
641.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
539.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
525.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
479.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
475.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
468.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
401.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
142.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
417.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 417.3
Samples: 4
Max nTPM: 569.8
Min nTPM: 318.5
Sample A
Male
569.8
Sample B
Male
393.1
Sample C
Female
318.5
Sample D
Female
387.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.