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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1034.7
nTPM
HPA Brain:
902.1
nTPM
GTEx:
1034.7
nTPM
FANTOM5:
1014.5
Scaled Tags Per Million
Pig:
1483.0
nTPM
Mouse:
606.4
nTPM
Allen mouse:
25.2
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA065539
Antibody HPA068768
Antibody CAB008363
Antibody CAB069921
Glial cells
Medium
Medium
Medium
Medium
Neuronal cells
Medium
Medium
High
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
902.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 902.1
2529
Female, age 94, left hemisphere
1130.8
2148
Female, age 91, left hemisphere
1006.8
1855
Male, age 76, left hemisphere
885.9
1898
Male, age 80, left hemisphere
868.1
1911
Female, age 85, right hemisphere
767.3
2621
Female, age 67, right hemisphere
753.6
Dentate gyrus nTPM: 695.7
2528
Male, age 74, both hemispheres
869.6
2246
Female, age 85, both hemispheres
745.7
2530
Female, age 94, left hemisphere
715.1
2010
Male, age 76, both hemispheres
711.1
1927
Female, age 91, both hemispheres
575.0
2531
Female, age 67, both hemispheres
557.5
Entorhinal gyrus nTPM: 832.6
2117
Female, age 91, right hemisphere
1673.1
1787
Male, age 76, left hemisphere
831.2
1938
Female, age 85, left hemisphere
765.4
2764
Male, age 80, right hemisphere
682.9
2613
Female, age 94, left hemisphere
560.4
2686
Male, age 75, right hemisphere
482.3
Hippocampus, CA1 nTPM: 777.1
2527
Male, age 74, both hemispheres
1275.6
2082
Female, age 91, right hemisphere
756.4
2045
Male, age 76, both hemispheres
698.1
1873
Female, age 85, both hemispheres
629.9
2749
Male, age 80, left hemisphere
525.7
Hippocampus, CA2 nTPM: 771.5
1940
Female, age 85, left hemisphere
1034.5
2113
Female, age 91, right hemisphere
973.0
2249
Male, age 74, both hemispheres
834.6
1963
Male, age 80, left hemisphere
658.4
2437
Female, age 94, left hemisphere
652.5
1892
Male, age 76, both hemispheres
475.7
Hippocampus, CA3 nTPM: 680.0
2436
Male, age 74, both hemispheres
844.6
2861
Female, age 67, both hemispheres
777.4
1867
Male, age 76, both hemispheres
686.2
1891
Female, age 85, both hemispheres
664.0
2620
Female, age 94, left hemisphere
622.1
2137
Male, age 80, left hemisphere
485.4
Parahippocampal cortex nTPM: 752.7
2250
Female, age 67, right hemisphere
1006.5
2018
Male, age 76, both hemispheres
926.1
2245
Female, age 91, both hemispheres
856.5
2692
Male, age 74, both hemispheres
820.4
1933
Female, age 85, both hemispheres
812.7
1990
Female, age 91, right hemisphere
768.1
2622
Female, age 67, right hemisphere
733.8
2532
Female, age 72, left hemisphere
627.8
1850
Male, age 80, both hemispheres
548.4
2693
Female, age 94, both hemispheres
426.4
Perirhinal gyrus nTPM: 616.7
1847
Female, age 91, left hemisphere
846.9
1794
Male, age 80, right hemisphere
692.6
2521
Female, age 94, right hemisphere
580.0
2848
Male, age 76, right hemisphere
485.2
1841
Female, age 85, right hemisphere
478.9
Subiculum nTPM: 870.4
2729
Female, age 91, right hemisphere
1185.3
2619
Male, age 74, both hemispheres
1027.2
2042
Male, age 76, both hemispheres
851.7
2438
Female, age 94, left hemisphere
758.7
1901
Male, age 80, both hemispheres
718.9
1977
Female, age 85, both hemispheres
680.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1034.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 1034.7
Samples: 197
Max nTPM: 3213.3
Min nTPM: 155.2
Std nTPM: 569.7
Median nTPM: 884.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
3213.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
3065.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
2651.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
2551.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
2362.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
2352.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
2349.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
2349.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
2282.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
2273.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
2259.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
2111.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
2074.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
2026.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
2009.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
2004.8
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
1950.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
1940.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
1822.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
1790.5
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
1774.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
1760.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
1756.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
1755.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
1740.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
1674.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
1668.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
1622.6
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
1617.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
1615.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
1604.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
1599.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
1587.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
1564.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
1553.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
1552.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
1533.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
1527.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
1503.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
1471.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
1422.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
1408.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
1405.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
1390.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
1357.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
1349.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
1344.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
1341.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
1329.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
1320.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
1313.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
1304.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
1270.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
1267.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
1265.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
1264.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
1259.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
1238.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
1236.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
1230.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
1209.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
1197.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
1164.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
1155.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
1142.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
1142.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
1134.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
1133.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
1118.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
1117.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
1112.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
1111.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
1106.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
1105.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
1102.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
1099.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
1095.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
1090.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
1066.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
1055.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
1050.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
1039.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
1039.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
1032.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
1006.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
992.3
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
989.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
988.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
951.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
927.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
924.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
913.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
909.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
906.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
900.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
890.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
890.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
886.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
884.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
878.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
861.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
861.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
856.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
853.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
849.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
848.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
844.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
836.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
824.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
822.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
812.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
809.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
807.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
800.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
795.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
795.6
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
791.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
789.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
783.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
781.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
777.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
776.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
771.6
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
769.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
759.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
745.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
737.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
732.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
727.6
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
726.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
724.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
721.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
718.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
710.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
696.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
692.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
682.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
676.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
675.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
672.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
670.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
665.5
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
661.6
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
660.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
639.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
634.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
632.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
630.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
628.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
623.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
618.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
598.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
593.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
586.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
576.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
574.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
573.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
564.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
548.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
544.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
543.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
539.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
531.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
524.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
524.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
520.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
506.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
482.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
455.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
451.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
451.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
451.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
449.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
444.5
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
439.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
437.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
431.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
428.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
426.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
425.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
418.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
408.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
392.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
370.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
366.6
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
362.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
362.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
346.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
344.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
343.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
332.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
293.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
292.3
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
271.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
235.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
222.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
155.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
606.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 606.4
Samples: 4
Max nTPM: 635.3
Min nTPM: 575.4
Sample A
Male
635.3
Sample B
Male
582.0
Sample C
Female
632.7
Sample D
Female
575.4
Hippocampal formation nTPM: 602.6
Samples: 4
Max nTPM: 638.5
Min nTPM: 534.1
Sample A
Male
638.5
Sample B
Male
606.4
Sample C
Female
534.1
Sample D
Female
631.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.