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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NECTIN2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
126.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
705.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
670.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
624.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
532.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
472.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
394.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
358.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
352.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
342.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
314.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
309.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
306.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
294.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
291.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
286.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
282.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
276.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
274.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
273.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
272.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
268.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
260.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
259.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
259.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
253.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
252.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
252.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
249.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
248.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
241.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
234.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
233.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
233.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
233.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
230.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
229.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
226.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
223.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
221.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
219.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
218.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
218.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
218.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
216.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
213.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
213.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
212.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
211.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
209.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
207.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
206.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
206.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
204.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
201.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
201.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
201.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
197.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
191.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
191.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
190.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
187.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
186.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
185.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
183.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
183.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
182.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
181.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
179.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
178.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
176.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
176.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
176.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
175.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
173.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
168.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
167.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
166.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
165.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
165.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
163.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
163.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
162.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
162.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
161.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
161.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
161.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
161.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
160.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
159.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
158.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
157.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
157.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
157.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
156.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
155.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
153.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
152.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
149.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
149.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
148.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
148.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
145.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
144.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
143.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
142.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
141.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
141.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
141.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
139.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
139.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
139.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
138.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
138.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
137.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
137.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
137.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
135.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
135.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
134.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
134.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
134.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
133.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
133.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
133.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
133.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
132.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
132.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
131.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
130.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
130.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
129.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
128.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
128.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
128.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
127.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
127.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
127.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
126.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
125.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
125.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
125.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
124.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
123.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
123.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
123.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
122.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
122.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
121.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
120.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
119.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
119.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
118.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
118.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
117.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
117.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
117.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
116.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
116.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
115.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
114.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
113.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
112.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
112.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
112.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
111.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
111.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
110.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
110.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
110.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
109.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
109.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
108.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
107.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
107.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
107.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
107.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
105.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
104.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
103.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
103.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
103.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
103.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
103.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
103.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
102.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
102.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
101.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
101.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
100.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
100.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
100.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
99.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
99.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
99.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
99.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
98.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
98.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
98.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
98.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
98.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
97.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
96.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
96.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
96.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
96.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
95.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
94.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
94.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
94.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
94.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
93.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
92.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
91.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
91.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
91.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
90.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
90.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
89.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
89.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
89.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
87.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
87.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
87.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
87.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
87.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
87.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
87.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
86.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
86.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
85.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
84.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
83.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
83.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
83.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
83.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
81.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
81.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
81.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
80.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
79.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
79.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
79.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
79.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
78.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
77.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
77.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
77.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
77.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
76.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
76.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
76.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
75.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
74.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
74.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
73.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
73.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
73.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
73.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
72.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
72.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
72.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
72.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
72.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
72.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
72.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
71.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
70.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
70.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
70.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
69.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
69.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
69.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
69.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
69.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
69.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
68.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
68.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
68.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
68.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
68.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
68.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
68.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
67.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
67.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
67.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
66.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
66.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
66.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
65.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
64.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
64.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
63.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
63.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
63.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
62.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
61.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
61.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
60.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
60.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
59.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
59.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
58.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
58.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
58.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
57.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
57.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
56.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
56.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
56.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
56.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
56.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
55.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
55.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
54.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
54.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
54.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
53.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
53.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
53.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
53.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
51.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
50.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
50.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
49.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
49.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
48.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
48.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
48.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
47.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
47.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
45.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
44.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
44.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
43.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
43.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
42.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
41.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
39.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
39.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
37.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
35.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
34.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
34.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
33.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
33.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
32.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
937
Tumor
1.6
463
Tumor
1.2
737
Tumor
1.1
975
Tumor
1.0
425
Tumor
1.0
967
Tumor
0.8
1021
Tumor
0.7
921
Tumor
0.7
661
Tumor
0.7
285
Tumor
0.7
745
Tumor
0.6
393
Tumor
0.6
341
Tumor
0.6
363
Tumor
0.6
221
Tumor
0.6
527
Tumor
0.5
635
Tumor
0.5
277
Tumor
0.5
443
Tumor
0.5
671
Tumor
0.5
497
Tumor
0.5
697
Tumor
0.5
977
Tumor
0.5
387
Tumor
0.4
431
Tumor
0.4
445
Tumor
0.4
571
Tumor
0.4
1015
Tumor
0.4
421
Tumor
0.4
1043
Tumor
0.4
641
Tumor
0.4
367
Tumor
0.4
383
Tumor
0.3
395
Tumor
0.3
567
Tumor
0.3
545
Tumor
0.3
147
Tumor
0.3
553
Tumor
0.3
231
Tumor
0.3
213
Tumor
0.3
881
Tumor
0.3
1031
Tumor
0.3
433
Tumor
0.3
517
Tumor
0.3
223
Tumor
0.3
353
Tumor
0.3
554
Normal
0.3
227
Tumor
0.3
647
Tumor
0.3
568
Normal
0.3
1025
Tumor
0.2
817
Tumor
0.2
112
Tumor
0.2
713
Tumor
0.2
572
Normal
0.2
983
Tumor
0.2
1028
Normal
0.2
564
Normal
0.2
473
Tumor
0.2
865
Tumor
0.2
368
Normal
0.2
786
Normal
0.2
558
Normal
0.2
617
Tumor
0.2
186
Normal
0.2
462
Normal
0.2
636
Normal
0.2
271
Tumor
0.2
861
Tumor
0.1
472
Normal
0.1
361
Tumor
0.1
162
Normal
0.1
286
Normal
0.1
217
Tumor
0.1
813
Tumor
0.1
452
Normal
0.1
518
Normal
0.1
642
Normal
0.1
481
Tumor
0.1
228
Normal
0.1
137
Tumor
0.1
785
Tumor
0.1
964
Normal
0.1
924
Normal
0.1
211
Tumor
0.1
172
Normal
0.1
743
Tumor
0.1
944
Normal
0.1
131
Tumor
0.1
963
Tumor
0.1
477
Tumor
0.1
563
Tumor
0.1
557
Tumor
0.1
955
Tumor
0.1
482
Normal
0.1
746
Normal
0.1
723
Tumor
0.1
755
Tumor
0.1
738
Normal
0.1
493
Tumor
0.1
344
Normal
0.1
1016
Normal
0.1
222
Normal
0.1
436
Normal
0.1
574
Normal
0.1
343
Tumor
0.1
618
Normal
0.1
523
Tumor
0.1
358
Normal
0.1
171
Tumor
0.1
258
Normal
0.0
447
Tumor
0.0
388
Normal
0.0
413
Tumor
0.0
742
Normal
0.0
982
Normal
0.0
185
Tumor
0.0
1032
Normal
0.0
196
Normal
0.0
362
Normal
0.0
952
Normal
0.0
954
Normal
0.0
951
Tumor
0.0
396
Normal
0.0
218
Normal
0.0
284
Normal
0.0
1022
Normal
0.0
868
Normal
0.0
698
Normal
0.0
214
Normal
0.0
728
Normal
0.0
573
Tumor
0.0
386
Normal
0.0
435
Tumor
0.0
914
Normal
0.0
232
Normal
0.0
391
Tumor
0.0
444
Normal
0.0
412
Normal
0.0
148
Normal
0.0
136
Normal
0.0
925
Tumor
0.0
524
Normal
0.0
851
Tumor
0.0
724
Normal
0.0
533
Tumor
0.0
528
Normal
0.0
515
Tumor
0.0
426
Normal
0.0
823
Tumor
0.0
488
Normal
0.0
918
Normal
0.0
968
Normal
0.0
546
Normal
0.0
922
Normal
0.0
455
Tumor
0.0
913
Tumor
0.0
132
Normal
0.0
212
Normal
0.0
873
Tumor
0.0
965
Tumor
0.0
981
Tumor
0.0
938
Normal
0.0
471
Tumor
0.0
1045
Tumor
0.0
1014
Normal
0.0
538
Normal
0.0
392
Normal
0.0
494
Normal
0.0
123
Tumor
0.0
272
Normal
0.0
984
Normal
0.0
878
Normal
0.0
721
Tumor
0.0
138
Normal
0.0
487
Tumor
0.0
976
Normal
0.0
464
Normal
0.0
428
Normal
0.0
468
Normal
0.0
686
Normal
0.0
365
Tumor
0.0
815
Tumor
0.0
628
Normal
0.0
432
Normal
0.0
128
Normal
0.0
778
Normal
0.0
414
Normal
0.0
262
Normal
0.0
448
Normal
-0.1
966
Normal
-0.1
424
Normal
-0.1
526
Normal
-0.1
516
Normal
-0.1
312
Normal
-0.1
648
Normal
-0.1
695
Tumor
-0.1
422
Normal
-0.1
1042
Normal
-0.1
456
Normal
-0.1
1046
Normal
-0.1
394
Normal
-0.1
867
Tumor
-0.1
376
Normal
-0.1
536
Normal
-0.1
615
Tumor
-0.1
777
Tumor
-0.1
1026
Normal
-0.1
195
Tumor
-0.1
114
Normal
-0.1
616
Normal
-0.1
434
Normal
-0.1
663
Tumor
-0.1
923
Tumor
-0.1
484
Normal
-0.1
474
Normal
-0.1
352
Normal
-0.1
814
Normal
-0.1
492
Normal
-0.1
416
Normal
-0.1
824
Normal
-0.1
366
Normal
-0.1
956
Normal
-0.1
756
Normal
-0.1
142
Normal
-0.1
816
Normal
-0.1
268
Normal
-0.1
111
Normal
-0.1
857
Tumor
-0.1
662
Normal
-0.1
446
Normal
-0.1
534
Normal
-0.1
342
Normal
-0.1
744
Normal
-0.1
127
Tumor
-0.1
926
Normal
-0.1
283
Tumor
-0.1
863
Tumor
-0.1
356
Normal
-0.1
727
Tumor
-0.1
514
Normal
-0.1
714
Normal
-0.1
188
Normal
-0.1
355
Tumor
-0.1
915
Tumor
-0.1
354
Normal
-0.1
364
Normal
-0.1
1044
Normal
-0.1
664
Normal
-0.2
187
Tumor
-0.2
161
Tumor
-0.2
224
Normal
-0.2
298
Normal
-0.2
722
Normal
-0.2
124
Normal
-0.2
874
Normal
-0.2
466
Normal
-0.2
864
Normal
-0.2
314
Normal
-0.2
278
Normal
-0.2
385
Tumor
-0.2
882
Normal
-0.2
478
Normal
-0.2
665
Tumor
-0.2
461
Tumor
-0.2
257
Tumor
-0.2
1041
Tumor
-0.2
696
Normal
-0.2
852
Normal
-0.2
135
Tumor
-0.2
498
Normal
-0.2
467
Tumor
-0.2
141
Tumor
-0.2
146
Normal
-0.2
862
Normal
-0.2
978
Normal
-0.2
958
Normal
-0.2
297
Tumor
-0.2
415
Tumor
-0.2
125
Tumor
-0.2
192
Normal
-0.2
916
Normal
-0.2
858
Normal
-0.2
866
Normal
-0.2
912
Normal
-0.2
943
Tumor
-0.2
126
Normal
-0.2
627
Tumor
-0.3
685
Tumor
-0.3
483
Tumor
-0.3
883
Tumor
-0.3
666
Normal
-0.3
513
Tumor
-0.3
423
Tumor
-0.3
465
Tumor
-0.3
145
Tumor
-0.3
328
Normal
-0.3
261
Tumor
-0.3
957
Tumor
-0.3
331
Tumor
-0.3
672
Normal
-0.3
384
Normal
-0.3
113
Tumor
-0.3
911
Tumor
-0.3
375
Tumor
-0.3
311
Tumor
-0.3
411
Tumor
-0.3
1013
Tumor
-0.3
877
Tumor
-0.3
351
Tumor
-0.3
818
Normal
-0.3
716
Normal
-0.4
332
Normal
-0.4
267
Tumor
-0.4
525
Tumor
-0.4
327
Tumor
-0.4
537
Tumor
-0.4
1027
Tumor
-0.4
884
Normal
-0.4
715
Tumor
-0.4
741
Tumor
-0.4
917
Tumor
-0.4
427
Tumor
-0.4
191
Tumor
-0.5
451
Tumor
-0.5
357
Tumor
-0.5
313
Tumor
-0.6
491
Tumor
-0.7
535
Tumor
-0.7
953
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.