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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRKCSH is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
166.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
547.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
427.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
395.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
372.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
346.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
335.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
322.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
306.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
298.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
291.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
291.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
288.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
288.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
287.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
287.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
282.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
276.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
274.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
274.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
272.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
272.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
265.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
265.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
264.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
257.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
256.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
255.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
252.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
252.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
249.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
246.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
244.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
243.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
242.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
240.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
240.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
239.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
239.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
239.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
238.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
237.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
237.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
237.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
237.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
234.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
233.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
231.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
230.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
230.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
229.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
227.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
226.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
226.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
225.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
224.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
223.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
222.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
221.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
221.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
221.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
220.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
220.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
220.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
220.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
219.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
217.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
217.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
215.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
215.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
214.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
214.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
213.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
213.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
213.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
213.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
212.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
211.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
210.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
210.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
209.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
207.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
206.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
206.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
205.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
205.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
205.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
205.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
204.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
203.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
203.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
202.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
201.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
200.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
198.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
197.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
197.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
196.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
196.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
196.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
196.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
195.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
194.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
193.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
193.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
193.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
192.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
191.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
191.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
191.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
191.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
191.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
191.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
191.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
190.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
189.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
187.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
187.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
187.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
187.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
186.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
185.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
185.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
183.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
183.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
183.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
183.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
183.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
182.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
182.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
182.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
182.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
181.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
181.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
181.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
179.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
179.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
179.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
179.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
178.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
178.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
177.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
177.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
177.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
176.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
176.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
175.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
175.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
175.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
175.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
174.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
174.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
173.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
173.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
173.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
172.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
172.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
171.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
170.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
169.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
169.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
169.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
168.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
166.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
166.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
165.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
165.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
164.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
164.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
164.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
163.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
163.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
163.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
163.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
162.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
161.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
161.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
160.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
160.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
160.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
158.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
158.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
158.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
156.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
155.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
155.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
155.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
154.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
154.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
153.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
153.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
152.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
151.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
151.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
151.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
151.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
151.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
150.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
150.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
150.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
149.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
149.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
149.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
148.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
148.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
148.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
147.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
146.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
146.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
146.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
146.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
145.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
145.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
143.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
142.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
142.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
142.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
142.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
141.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
141.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
141.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
141.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
140.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
140.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
139.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
138.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
138.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
138.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
138.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
138.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
137.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
137.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
137.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
137.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
137.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
136.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
136.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
136.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
136.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
135.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
135.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
134.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
134.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
134.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
134.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
134.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
133.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
132.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
132.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
132.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
132.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
131.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
131.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
129.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
129.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
129.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
128.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
128.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
128.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
128.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
127.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
126.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
126.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
126.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
125.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
125.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
125.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
125.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
124.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
124.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
123.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
123.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
123.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
123.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
121.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
121.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
120.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
120.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
120.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
120.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
120.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
119.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
119.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
119.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
119.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
118.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
118.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
118.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
117.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
117.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
117.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
116.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
115.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
115.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
113.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
112.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
112.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
112.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
111.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
111.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
111.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
110.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
110.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
109.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
108.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
108.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
107.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
107.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
107.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
106.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
106.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
105.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
104.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
103.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
103.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
101.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
101.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
100.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
100.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
100.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
98.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
98.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
98.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
97.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
96.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
95.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
95.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
94.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
94.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
94.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
94.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
94.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
93.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
90.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
90.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
90.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
89.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
88.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
87.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
87.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
86.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
85.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
84.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
84.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
82.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
82.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
81.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
80.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
79.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
77.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
77.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
73.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
70.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
70.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
66.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
60.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
60.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
56.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
43.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
39.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
24.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRKCSH is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
115.7
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
379.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
219.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
219.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
215.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
212.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
209.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
200.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
199.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
197.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
192.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
192.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
190.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
190.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
188.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
188.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
187.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
186.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
184.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
179.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
175.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
174.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
174.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
172.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
169.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
169.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
168.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
167.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
164.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
162.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
162.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
161.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
161.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
160.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
159.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
151.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
151.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
150.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
150.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
150.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
149.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
148.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
147.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
147.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
146.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
145.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
142.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
142.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
142.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
141.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
141.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
141.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
141.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
140.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
140.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
138.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
137.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
136.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
135.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
135.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
134.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
133.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
133.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
131.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
130.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
130.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
130.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
129.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
129.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
128.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
128.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
127.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
127.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
126.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
126.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
126.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
125.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
125.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
125.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
125.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
124.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
124.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
123.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
123.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
122.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
122.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
122.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
121.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
120.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
120.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
120.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
119.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
118.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
118.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
118.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
117.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
117.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
117.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
117.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
116.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
115.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
114.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
114.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
113.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
113.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
113.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
112.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
112.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
112.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
112.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
110.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
109.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
109.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
109.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
109.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
108.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
107.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
107.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
107.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
106.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
106.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
106.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
105.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
105.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
105.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
104.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
103.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
103.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
103.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
102.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
102.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
101.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
101.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
101.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
100.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
100.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
100.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
100.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
99.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
99.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
99.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
99.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
98.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
98.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
98.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
98.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
97.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
97.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
96.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
96.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
96.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
96.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
96.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
95.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
94.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
94.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
94.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
93.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
93.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
93.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
93.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
93.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
92.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
92.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
92.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
91.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
90.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
90.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
89.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
89.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
88.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
88.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
88.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
87.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
86.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
84.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
83.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
83.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
83.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
83.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
82.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
82.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
81.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
81.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
81.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
80.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
80.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
80.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
80.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
79.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
79.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
79.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
78.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
77.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
77.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
77.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
77.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
76.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
75.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
75.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
75.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
74.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
74.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
74.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
74.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
72.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
72.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
72.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
72.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
72.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
72.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
71.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
71.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
70.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
69.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
69.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
69.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
68.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
68.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
67.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
64.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
64.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
63.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
63.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
62.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
61.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
59.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
59.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
58.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
57.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
56.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
53.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
813
Tumor
1.3
727
Tumor
0.8
445
Tumor
0.7
527
Tumor
0.7
285
Tumor
0.6
814
Normal
0.6
851
Tumor
0.6
473
Tumor
0.5
615
Tumor
0.5
481
Tumor
0.4
223
Tumor
0.4
857
Tumor
0.4
785
Tumor
0.4
554
Normal
0.4
915
Tumor
0.4
452
Normal
0.4
744
Normal
0.4
553
Tumor
0.4
815
Tumor
0.3
755
Tumor
0.3
878
Normal
0.3
363
Tumor
0.3
387
Tumor
0.3
431
Tumor
0.3
351
Tumor
0.3
1044
Normal
0.3
938
Normal
0.3
227
Tumor
0.3
865
Tumor
0.3
488
Normal
0.3
954
Normal
0.3
698
Normal
0.3
392
Normal
0.3
922
Normal
0.3
963
Tumor
0.3
124
Normal
0.3
537
Tumor
0.2
686
Normal
0.2
1014
Normal
0.2
981
Tumor
0.2
172
Normal
0.2
1015
Tumor
0.2
977
Tumor
0.2
778
Normal
0.2
148
Normal
0.2
261
Tumor
0.2
412
Normal
0.2
648
Normal
0.2
376
Normal
0.2
342
Normal
0.2
448
Normal
0.2
983
Tumor
0.2
746
Normal
0.2
937
Tumor
0.2
123
Tumor
0.2
484
Normal
0.2
128
Normal
0.2
685
Tumor
0.2
912
Normal
0.2
1022
Normal
0.2
171
Tumor
0.2
517
Tumor
0.2
866
Normal
0.2
426
Normal
0.2
368
Normal
0.2
696
Normal
0.2
816
Normal
0.2
1013
Tumor
0.2
742
Normal
0.2
952
Normal
0.2
636
Normal
0.2
538
Normal
0.2
883
Tumor
0.2
358
Normal
0.2
786
Normal
0.2
463
Tumor
0.2
723
Tumor
0.2
482
Normal
0.2
466
Normal
0.2
572
Normal
0.2
616
Normal
0.2
137
Tumor
0.2
131
Tumor
0.2
186
Normal
0.2
738
Normal
0.2
546
Normal
0.2
714
Normal
0.2
314
Normal
0.2
518
Normal
0.2
864
Normal
0.1
1043
Tumor
0.1
881
Tumor
0.1
567
Tumor
0.1
911
Tumor
0.1
534
Normal
0.1
356
Normal
0.1
228
Normal
0.1
286
Normal
0.1
395
Tumor
0.1
494
Normal
0.1
1045
Tumor
0.1
271
Tumor
0.1
882
Normal
0.1
862
Normal
0.1
162
Normal
0.1
982
Normal
0.1
523
Tumor
0.1
125
Tumor
0.1
142
Normal
0.1
968
Normal
0.1
232
Normal
0.1
955
Tumor
0.1
354
Normal
0.1
493
Tumor
0.1
944
Normal
0.1
111
Normal
0.1
716
Normal
0.1
1028
Normal
0.1
422
Normal
0.1
526
Normal
0.1
196
Normal
0.1
492
Normal
0.1
984
Normal
0.1
662
Normal
0.1
873
Tumor
0.1
868
Normal
0.1
277
Tumor
0.1
114
Normal
0.1
514
Normal
0.1
1046
Normal
0.1
724
Normal
0.1
435
Tumor
0.1
516
Normal
0.1
1032
Normal
0.1
978
Normal
0.1
1026
Normal
0.1
728
Normal
0.1
284
Normal
0.1
852
Normal
0.1
258
Normal
0.1
462
Normal
0.1
221
Tumor
0.1
568
Normal
0.1
447
Tumor
0.1
394
Normal
0.1
924
Normal
0.1
528
Normal
0.1
222
Normal
0.1
921
Tumor
0.1
388
Normal
0.1
262
Normal
0.1
212
Normal
0.1
818
Normal
0.1
824
Normal
0.1
145
Tumor
0.1
332
Normal
0.0
365
Tumor
0.0
298
Normal
0.0
966
Normal
0.0
964
Normal
0.0
224
Normal
0.0
132
Normal
0.0
722
Normal
0.0
874
Normal
0.0
472
Normal
0.0
958
Normal
0.0
756
Normal
0.0
956
Normal
0.0
352
Normal
0.0
272
Normal
0.0
478
Normal
0.0
536
Normal
0.0
697
Tumor
0.0
524
Normal
0.0
858
Normal
0.0
218
Normal
0.0
737
Tumor
0.0
498
Normal
0.0
268
Normal
0.0
877
Tumor
0.0
195
Tumor
0.0
278
Normal
0.0
863
Tumor
0.0
138
Normal
0.0
217
Tumor
0.0
414
Normal
0.0
721
Tumor
0.0
366
Normal
0.0
914
Normal
0.0
214
Normal
0.0
926
Normal
0.0
474
Normal
0.0
564
Normal
0.0
1025
Tumor
0.0
436
Normal
0.0
743
Tumor
0.0
672
Normal
0.0
136
Normal
0.0
344
Normal
0.0
364
Normal
0.0
113
Tumor
0.0
468
Normal
0.0
965
Tumor
0.0
557
Tumor
0.0
353
Tumor
0.0
362
Normal
0.0
126
Normal
0.0
665
Tumor
0.0
147
Tumor
0.0
664
Normal
-0.1
925
Tumor
-0.1
432
Normal
-0.1
384
Normal
-0.1
618
Normal
-0.1
641
Tumor
-0.1
884
Normal
-0.1
916
Normal
-0.1
741
Tumor
-0.1
328
Normal
-0.1
967
Tumor
-0.1
558
Normal
-0.1
1016
Normal
-0.1
465
Tumor
-0.1
976
Normal
-0.1
446
Normal
-0.1
464
Normal
-0.1
331
Tumor
-0.1
918
Normal
-0.1
396
Normal
-0.1
574
Normal
-0.1
393
Tumor
-0.1
188
Normal
-0.1
375
Tumor
-0.1
666
Normal
-0.1
1021
Tumor
-0.1
413
Tumor
-0.1
411
Tumor
-0.1
953
Tumor
-0.1
416
Normal
-0.1
467
Tumor
-0.1
628
Normal
-0.1
312
Normal
-0.1
642
Normal
-0.1
451
Tumor
-0.1
513
Tumor
-0.1
146
Normal
-0.1
456
Normal
-0.1
424
Normal
-0.1
257
Tumor
-0.1
444
Normal
-0.1
635
Tumor
-0.1
867
Tumor
-0.1
823
Tumor
-0.1
713
Tumor
-0.1
428
Normal
-0.1
491
Tumor
-0.2
715
Tumor
-0.2
483
Tumor
-0.2
386
Normal
-0.2
434
Normal
-0.2
487
Tumor
-0.2
423
Tumor
-0.2
112
Tumor
-0.2
923
Tumor
-0.2
357
Tumor
-0.2
283
Tumor
-0.2
515
Tumor
-0.2
1041
Tumor
-0.2
695
Tumor
-0.2
127
Tumor
-0.2
777
Tumor
-0.2
647
Tumor
-0.2
1042
Normal
-0.2
913
Tumor
-0.2
477
Tumor
-0.2
211
Tumor
-0.2
497
Tumor
-0.2
415
Tumor
-0.2
745
Tumor
-0.2
192
Normal
-0.2
185
Tumor
-0.2
161
Tumor
-0.2
383
Tumor
-0.2
545
Tumor
-0.3
327
Tumor
-0.3
975
Tumor
-0.3
421
Tumor
-0.3
455
Tumor
-0.3
367
Tumor
-0.3
943
Tumor
-0.3
571
Tumor
-0.3
297
Tumor
-0.3
917
Tumor
-0.3
391
Tumor
-0.3
267
Tumor
-0.3
311
Tumor
-0.3
1031
Tumor
-0.3
187
Tumor
-0.3
313
Tumor
-0.3
433
Tumor
-0.3
1027
Tumor
-0.3
471
Tumor
-0.4
617
Tumor
-0.4
525
Tumor
-0.4
443
Tumor
-0.4
361
Tumor
-0.4
191
Tumor
-0.4
343
Tumor
-0.4
341
Tumor
-0.4
425
Tumor
-0.4
141
Tumor
-0.4
355
Tumor
-0.4
563
Tumor
-0.4
573
Tumor
-0.4
951
Tumor
-0.5
661
Tumor
-0.5
627
Tumor
-0.5
817
Tumor
-0.5
671
Tumor
-0.6
427
Tumor
-0.6
535
Tumor
-0.6
135
Tumor
-0.6
231
Tumor
-0.6
461
Tumor
-0.6
385
Tumor
-0.6
213
Tumor
-0.6
957
Tumor
-0.7
663
Tumor
-0.7
533
Tumor
-0.8
861
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.