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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS4Y1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
111.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
916.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
867.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
647.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
555.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
527.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
501.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
496.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
474.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
462.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
452.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
446.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
435.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
427.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
426.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
409.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
402.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
388.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
376.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
365.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
358.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
317.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
315.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
314.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
310.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
303.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
303.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
302.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
297.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
294.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
292.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
290.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
286.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
286.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
279.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
277.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
274.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
272.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
268.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
267.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
266.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
265.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
264.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
264.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
259.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
255.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
254.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
252.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
251.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
247.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
247.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
244.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
243.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
242.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
242.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
240.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
238.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
237.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
236.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
236.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
236.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
230.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
230.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
228.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
227.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
219.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
217.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
212.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
212.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
211.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
211.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
211.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
210.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
207.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
204.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
202.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
202.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
202.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
201.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
201.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
199.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
198.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
198.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
198.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
194.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
194.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
193.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
192.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
192.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
188.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
187.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
187.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
186.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
186.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
185.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
180.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
180.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
178.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
178.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
177.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
177.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
175.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
172.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
171.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
170.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
169.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
169.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
169.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
169.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
167.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
166.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
165.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
164.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
161.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
159.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
158.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
157.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
157.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
156.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
156.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
155.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
155.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
155.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
155.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
153.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
150.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
150.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
148.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
147.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
145.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
145.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
142.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
141.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
141.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
139.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
139.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
137.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
133.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
130.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
130.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
130.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
126.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
124.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
123.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
123.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
121.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
121.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
120.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
120.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
118.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
118.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
113.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
112.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
111.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
109.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
109.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
108.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
107.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
107.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
106.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
105.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
105.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
102.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
100.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
96.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
96.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
94.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
89.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
88.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
88.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
88.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
86.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
84.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
83.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
77.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
66.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
66.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
66.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
65.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
64.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
62.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
60.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
59.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
57.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
57.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
52.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
48.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
37.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
37.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
35.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
33.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
33.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS4Y1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
164.8
Number of samples
231
Samples
Sample
Description
TPM
DO50785
0 years, male, NA, stage:4, dead, 90 days
2314.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
982.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
825.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
791.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
679.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
659.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
609.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
564.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
547.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
542.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
510.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
487.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
482.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
470.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
448.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
433.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
418.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
414.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
408.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
396.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
393.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
388.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
377.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
375.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
363.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
362.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
340.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
337.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
336.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
328.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
313.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
311.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
297.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
296.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
294.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
293.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
282.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
281.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
274.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
268.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
268.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
266.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
265.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
264.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
262.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
261.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
259.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
257.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
257.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
255.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
254.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
251.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
251.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
251.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
250.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
249.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
247.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
245.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
244.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
242.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
240.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
228.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
227.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
227.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
225.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
225.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
223.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
218.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
215.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
215.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
213.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
210.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
208.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
207.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
202.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
199.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
198.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
198.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
194.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
186.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
185.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
184.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
182.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
181.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
180.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
179.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
176.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
175.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
171.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
170.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
168.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
167.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
164.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
162.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
159.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
157.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
156.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
154.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
154.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
153.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
153.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
150.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
150.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
149.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
146.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
145.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
145.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
145.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
144.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
142.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
141.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
140.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
139.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
139.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
138.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
137.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
135.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
134.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
133.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
132.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
130.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
130.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
129.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
127.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
127.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
120.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
120.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
119.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
119.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
117.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
117.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
116.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
108.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
97.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
96.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
90.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
82.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
82.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
72.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
71.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
69.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
61.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
58.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
56.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
49.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
39.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
39.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
35.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
517
Tumor
0.9
331
Tumor
0.7
877
Tumor
0.5
567
Tumor
0.5
113
Tumor
0.5
1032
Normal
0.4
327
Tumor
0.4
636
Normal
0.4
353
Tumor
0.4
866
Normal
0.4
648
Normal
0.4
466
Normal
0.4
1041
Tumor
0.4
528
Normal
0.4
523
Tumor
0.4
314
Normal
0.4
852
Normal
0.4
413
Tumor
0.4
534
Normal
0.4
494
Normal
0.4
136
Normal
0.4
573
Tumor
0.4
172
Normal
0.4
824
Normal
0.4
696
Normal
0.4
617
Tumor
0.4
661
Tumor
0.4
492
Normal
0.4
1014
Normal
0.3
686
Normal
0.3
524
Normal
0.3
922
Normal
0.3
191
Tumor
0.3
484
Normal
0.3
387
Tumor
0.3
558
Normal
0.3
756
Normal
0.3
628
Normal
0.3
957
Tumor
0.3
916
Normal
0.3
332
Normal
0.3
162
Normal
0.3
536
Normal
0.3
858
Normal
0.3
546
Normal
0.3
964
Normal
0.3
356
Normal
0.3
422
Normal
0.3
135
Tumor
0.3
983
Tumor
0.3
938
Normal
0.3
1042
Normal
0.3
516
Normal
0.3
212
Normal
0.3
944
Normal
0.3
557
Tumor
0.3
286
Normal
0.3
864
Normal
0.3
222
Normal
0.3
742
Normal
0.3
232
Normal
0.3
958
Normal
0.3
412
Normal
0.3
664
Normal
0.3
187
Tumor
0.3
572
Normal
0.3
414
Normal
0.3
278
Normal
0.3
976
Normal
0.3
755
Tumor
0.3
912
Normal
0.3
195
Tumor
0.3
448
Normal
0.3
716
Normal
0.3
984
Normal
0.3
514
Normal
0.3
395
Tumor
0.3
142
Normal
0.3
786
Normal
0.3
111
Normal
0.2
138
Normal
0.2
114
Normal
0.2
518
Normal
0.2
186
Normal
0.2
132
Normal
0.2
394
Normal
0.2
978
Normal
0.2
867
Tumor
0.2
926
Normal
0.2
882
Normal
0.2
443
Tumor
0.2
666
Normal
0.2
196
Normal
0.2
482
Normal
0.2
862
Normal
0.2
267
Tumor
0.2
421
Tumor
0.2
284
Normal
0.2
367
Tumor
0.2
462
Normal
0.2
228
Normal
0.2
1015
Tumor
0.2
526
Normal
0.2
312
Normal
0.2
474
Normal
0.2
472
Normal
0.2
564
Normal
0.2
436
Normal
0.2
568
Normal
0.2
1016
Normal
0.2
128
Normal
0.2
982
Normal
0.2
954
Normal
0.2
376
Normal
0.2
861
Tumor
0.2
272
Normal
0.2
392
Normal
0.2
258
Normal
0.2
533
Tumor
0.2
262
Normal
0.2
446
Normal
0.2
1046
Normal
0.2
918
Normal
0.2
148
Normal
0.2
428
Normal
0.2
352
Normal
0.2
145
Tumor
0.2
362
Normal
0.2
662
Normal
0.2
388
Normal
0.2
878
Normal
0.2
452
Normal
0.2
358
Normal
0.2
124
Normal
0.2
672
Normal
0.2
464
Normal
0.2
618
Normal
0.1
131
Tumor
0.1
467
Tumor
0.1
981
Tumor
0.1
715
Tumor
0.1
396
Normal
0.1
188
Normal
0.1
868
Normal
0.1
427
Tumor
0.1
884
Normal
0.1
147
Tumor
0.1
432
Normal
0.1
451
Tumor
0.1
538
Normal
0.1
146
Normal
0.1
423
Tumor
0.1
285
Tumor
0.1
865
Tumor
0.1
444
Normal
0.1
785
Tumor
0.1
268
Normal
0.1
671
Tumor
0.1
126
Normal
0.1
435
Tumor
0.1
1031
Tumor
0.1
424
Normal
0.1
943
Tumor
0.1
354
Normal
0.1
351
Tumor
0.1
364
Normal
0.1
223
Tumor
0.1
857
Tumor
0.1
498
Normal
0.1
137
Tumor
0.1
574
Normal
0.1
468
Normal
0.1
393
Tumor
0.1
491
Tumor
0.1
527
Tumor
0.1
953
Tumor
0.1
224
Normal
0.1
313
Tumor
0.1
515
Tumor
0.1
975
Tumor
0.1
416
Normal
0.1
365
Tumor
0.1
112
Tumor
0.1
911
Tumor
0.1
851
Tumor
0.1
221
Tumor
0.0
271
Tumor
0.0
141
Tumor
0.0
535
Tumor
0.0
463
Tumor
0.0
447
Tumor
0.0
963
Tumor
0.0
328
Normal
0.0
277
Tumor
0.0
368
Normal
0.0
874
Normal
0.0
815
Tumor
0.0
366
Normal
0.0
685
Tumor
0.0
384
Normal
0.0
192
Normal
0.0
977
Tumor
0.0
125
Tumor
0.0
738
Normal
0.0
218
Normal
0.0
723
Tumor
0.0
914
Normal
0.0
917
Tumor
0.0
445
Tumor
0.0
127
Tumor
0.0
385
Tumor
0.0
937
Tumor
0.0
471
Tumor
0.0
1021
Tumor
0.0
881
Tumor
0.0
647
Tumor
0.0
214
Normal
0.0
355
Tumor
0.0
431
Tumor
0.0
426
Normal
-0.1
185
Tumor
-0.1
873
Tumor
-0.1
434
Normal
-0.1
461
Tumor
-0.1
311
Tumor
-0.1
743
Tumor
-0.1
913
Tumor
-0.1
483
Tumor
-0.1
493
Tumor
-0.1
415
Tumor
-0.1
465
Tumor
-0.1
571
Tumor
-0.1
361
Tumor
-0.1
814
Normal
-0.1
727
Tumor
-0.1
211
Tumor
-0.1
217
Tumor
-0.1
513
Tumor
-0.1
363
Tumor
-0.1
261
Tumor
-0.1
227
Tumor
-0.2
231
Tumor
-0.2
921
Tumor
-0.2
863
Tumor
-0.2
1022
Normal
-0.2
433
Tumor
-0.2
537
Tumor
-0.2
411
Tumor
-0.2
383
Tumor
-0.2
665
Tumor
-0.2
161
Tumor
-0.2
823
Tumor
-0.2
713
Tumor
-0.2
728
Normal
-0.2
481
Tumor
-0.2
663
Tumor
-0.2
745
Tumor
-0.2
391
Tumor
-0.2
297
Tumor
-0.2
283
Tumor
-0.2
545
Tumor
-0.2
563
Tumor
-0.2
818
Normal
-0.2
737
Tumor
-0.2
813
Tumor
-0.2
1028
Normal
-0.3
1045
Tumor
-0.3
213
Tumor
-0.3
1027
Tumor
-0.3
554
Normal
-0.3
375
Tumor
-0.3
724
Normal
-0.3
386
Normal
-0.3
298
Normal
-0.3
627
Tumor
-0.3
257
Tumor
-0.3
171
Tumor
-0.3
817
Tumor
-0.3
1044
Normal
-0.3
698
Normal
-0.3
1026
Normal
-0.3
722
Normal
-0.3
635
Tumor
-0.3
925
Tumor
-0.3
497
Tumor
-0.3
741
Tumor
-0.3
968
Normal
-0.3
923
Tumor
-0.3
344
Normal
-0.4
956
Normal
-0.4
915
Tumor
-0.4
777
Tumor
-0.4
778
Normal
-0.4
714
Normal
-0.4
525
Tumor
-0.4
721
Tumor
-0.4
616
Normal
-0.4
615
Tumor
-0.4
883
Tumor
-0.4
746
Normal
-0.4
456
Normal
-0.4
952
Normal
-0.4
425
Tumor
-0.4
695
Tumor
-0.4
816
Normal
-0.4
488
Normal
-0.4
965
Tumor
-0.4
553
Tumor
-0.5
924
Normal
-0.5
966
Normal
-0.5
955
Tumor
-0.5
342
Normal
-0.5
357
Tumor
-0.5
1043
Tumor
-0.5
641
Tumor
-0.5
697
Tumor
-0.5
123
Tumor
-0.5
744
Normal
-0.5
1025
Tumor
-0.5
343
Tumor
-0.6
1013
Tumor
-0.6
642
Normal
-0.6
455
Tumor
-0.6
478
Normal
-0.6
967
Tumor
-0.6
487
Tumor
-0.7
341
Tumor
-0.7
951
Tumor
-0.7
477
Tumor
-0.9
473
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.