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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC14L1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
58.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC14L1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.8
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
37.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.5
617
Tumor
1.2
285
Tumor
1.0
557
Tumor
0.9
363
Tumor
0.9
917
Tumor
0.8
957
Tumor
0.8
533
Tumor
0.8
395
Tumor
0.8
983
Tumor
0.8
375
Tumor
0.7
385
Tumor
0.6
815
Tumor
0.6
715
Tumor
0.6
513
Tumor
0.6
125
Tumor
0.6
421
Tumor
0.6
113
Tumor
0.5
136
Normal
0.5
311
Tumor
0.5
925
Tumor
0.5
145
Tumor
0.5
1043
Tumor
0.5
187
Tumor
0.5
135
Tumor
0.4
978
Normal
0.4
147
Tumor
0.4
984
Normal
0.4
142
Normal
0.4
138
Normal
0.4
137
Tumor
0.4
357
Tumor
0.4
663
Tumor
0.4
671
Tumor
0.4
851
Tumor
0.4
953
Tumor
0.4
981
Tumor
0.4
567
Tumor
0.4
745
Tumor
0.3
877
Tumor
0.3
433
Tumor
0.3
1014
Normal
0.3
861
Tumor
0.3
916
Normal
0.3
427
Tumor
0.3
571
Tumor
0.3
926
Normal
0.3
423
Tumor
0.3
354
Normal
0.3
858
Normal
0.3
267
Tumor
0.3
965
Tumor
0.3
132
Normal
0.3
146
Normal
0.3
494
Normal
0.3
413
Tumor
0.3
912
Normal
0.3
352
Normal
0.2
188
Normal
0.2
915
Tumor
0.2
672
Normal
0.2
186
Normal
0.2
498
Normal
0.2
355
Tumor
0.2
358
Normal
0.2
391
Tumor
0.2
434
Normal
0.2
344
Normal
0.2
353
Tumor
0.2
864
Normal
0.2
545
Tumor
0.2
1016
Normal
0.2
922
Normal
0.2
968
Normal
0.2
862
Normal
0.2
954
Normal
0.2
362
Normal
0.2
478
Normal
0.2
852
Normal
0.2
937
Tumor
0.2
488
Normal
0.2
723
Tumor
0.2
211
Tumor
0.2
535
Tumor
0.2
342
Normal
0.2
477
Tumor
0.1
824
Normal
0.1
283
Tumor
0.1
214
Normal
0.1
868
Normal
0.1
756
Normal
0.1
224
Normal
0.1
526
Normal
0.1
297
Tumor
0.1
865
Tumor
0.1
958
Normal
0.1
818
Normal
0.1
141
Tumor
0.1
351
Tumor
0.1
538
Normal
0.1
343
Tumor
0.1
878
Normal
0.1
662
Normal
0.1
386
Normal
0.1
1015
Tumor
0.1
956
Normal
0.1
524
Normal
0.1
914
Normal
0.1
361
Tumor
0.1
223
Tumor
0.1
866
Normal
0.1
392
Normal
0.1
967
Tumor
0.1
857
Tumor
0.1
482
Normal
0.1
982
Normal
0.1
112
Tumor
0.1
517
Tumor
0.1
742
Normal
0.1
1022
Normal
0.1
713
Tumor
0.1
721
Tumor
0.1
913
Tumor
0.1
368
Normal
0.1
952
Normal
0.1
332
Normal
0.1
665
Tumor
0.0
261
Tumor
0.0
528
Normal
0.0
212
Normal
0.0
516
Normal
0.0
944
Normal
0.0
364
Normal
0.0
126
Normal
0.0
327
Tumor
0.0
882
Normal
0.0
1044
Normal
0.0
328
Normal
0.0
284
Normal
0.0
744
Normal
0.0
716
Normal
0.0
648
Normal
0.0
816
Normal
0.0
867
Tumor
0.0
461
Tumor
0.0
943
Tumor
0.0
231
Tumor
0.0
786
Normal
0.0
444
Normal
0.0
534
Normal
0.0
394
Normal
0.0
738
Normal
0.0
312
Normal
0.0
387
Tumor
0.0
492
Normal
0.0
863
Tumor
0.0
422
Normal
0.0
966
Normal
0.0
396
Normal
0.0
554
Normal
0.0
525
Tumor
0.0
331
Tumor
0.0
172
Normal
0.0
923
Tumor
0.0
514
Normal
0.0
388
Normal
0.0
664
Normal
0.0
722
Normal
0.0
384
Normal
0.0
111
Normal
0.0
195
Tumor
0.0
185
Tumor
0.0
728
Normal
0.0
393
Tumor
0.0
666
Normal
0.0
924
Normal
0.0
356
Normal
0.0
416
Normal
0.0
383
Tumor
0.0
527
Tumor
0.0
286
Normal
0.0
162
Normal
-0.1
627
Tumor
-0.1
874
Normal
-0.1
446
Normal
-0.1
546
Normal
-0.1
213
Tumor
-0.1
785
Tumor
-0.1
148
Normal
-0.1
365
Tumor
-0.1
171
Tumor
-0.1
497
Tumor
-0.1
462
Normal
-0.1
698
Normal
-0.1
228
Normal
-0.1
481
Tumor
-0.1
884
Normal
-0.1
262
Normal
-0.1
432
Normal
-0.1
1046
Normal
-0.1
918
Normal
-0.1
474
Normal
-0.1
741
Tumor
-0.1
574
Normal
-0.1
472
Normal
-0.1
778
Normal
-0.1
114
Normal
-0.1
128
Normal
-0.1
268
Normal
-0.1
414
Normal
-0.1
232
Normal
-0.1
724
Normal
-0.1
686
Normal
-0.1
424
Normal
-0.1
558
Normal
-0.1
257
Tumor
-0.1
428
Normal
-0.1
493
Tumor
-0.1
563
Tumor
-0.1
484
Normal
-0.1
536
Normal
-0.1
746
Normal
-0.1
714
Normal
-0.1
161
Tumor
-0.1
696
Normal
-0.1
573
Tumor
-0.1
258
Normal
-0.1
1042
Normal
-0.1
976
Normal
-0.1
685
Tumor
-0.2
491
Tumor
-0.2
278
Normal
-0.2
743
Tumor
-0.2
823
Tumor
-0.2
415
Tumor
-0.2
124
Normal
-0.2
1032
Normal
-0.2
572
Normal
-0.2
192
Normal
-0.2
227
Tumor
-0.2
553
Tumor
-0.2
411
Tumor
-0.2
412
Normal
-0.2
1026
Normal
-0.2
883
Tumor
-0.2
367
Tumor
-0.2
964
Normal
-0.2
938
Normal
-0.2
298
Normal
-0.2
518
Normal
-0.2
465
Tumor
-0.2
628
Normal
-0.2
191
Tumor
-0.2
568
Normal
-0.2
636
Normal
-0.2
277
Tumor
-0.3
426
Normal
-0.3
366
Normal
-0.3
515
Tumor
-0.3
196
Normal
-0.3
564
Normal
-0.3
435
Tumor
-0.3
911
Tumor
-0.3
977
Tumor
-0.3
1041
Tumor
-0.3
272
Normal
-0.3
616
Normal
-0.3
814
Normal
-0.3
218
Normal
-0.3
123
Tumor
-0.3
314
Normal
-0.3
523
Tumor
-0.3
873
Tumor
-0.3
471
Tumor
-0.3
618
Normal
-0.3
271
Tumor
-0.3
755
Tumor
-0.3
313
Tumor
-0.3
376
Normal
-0.4
881
Tumor
-0.4
1013
Tumor
-0.4
131
Tumor
-0.4
456
Normal
-0.4
642
Normal
-0.4
963
Tumor
-0.4
647
Tumor
-0.4
615
Tumor
-0.4
464
Normal
-0.4
1028
Normal
-0.4
537
Tumor
-0.4
1025
Tumor
-0.4
727
Tumor
-0.4
955
Tumor
-0.4
455
Tumor
-0.4
1027
Tumor
-0.4
436
Normal
-0.5
445
Tumor
-0.5
975
Tumor
-0.5
217
Tumor
-0.5
466
Normal
-0.5
483
Tumor
-0.5
921
Tumor
-0.5
737
Tumor
-0.5
467
Tumor
-0.5
468
Normal
-0.5
1031
Tumor
-0.5
641
Tumor
-0.5
817
Tumor
-0.5
452
Normal
-0.5
443
Tumor
-0.5
777
Tumor
-0.5
341
Tumor
-0.6
813
Tumor
-0.6
695
Tumor
-0.6
463
Tumor
-0.6
697
Tumor
-0.6
448
Normal
-0.6
127
Tumor
-0.6
222
Normal
-0.6
951
Tumor
-0.7
447
Tumor
-0.7
487
Tumor
-0.7
431
Tumor
-0.7
451
Tumor
-0.8
425
Tumor
-0.9
635
Tumor
-0.9
473
Tumor
-1.0
221
Tumor
-1.0
1045
Tumor
-1.0
1021
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
