We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
REEP5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
60.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
184.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
173.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
147.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
139.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
137.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
136.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
136.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
126.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
122.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
122.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
110.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
110.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
107.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
107.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
107.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
105.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
105.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
103.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
103.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
103.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
102.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
101.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
101.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
101.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
100.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
99.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
98.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
97.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
97.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
96.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
95.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
95.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
95.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
94.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
94.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
93.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
93.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
93.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
92.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
92.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
92.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
91.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
91.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
90.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
89.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
89.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
87.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
87.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
87.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
87.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
87.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
86.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
85.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
85.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
83.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
83.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
82.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
81.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
80.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
80.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
80.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
79.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
79.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
79.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
79.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
79.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
78.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
78.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
77.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
77.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
76.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
76.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
76.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
75.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
75.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
75.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
75.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
74.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
74.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
74.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
74.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
74.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
74.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
74.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
74.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
73.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
73.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
73.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
73.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
72.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
72.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
72.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
72.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
72.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
71.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
71.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
71.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
71.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
71.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
70.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
70.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
70.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
70.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
69.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
69.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
69.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
69.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
68.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
68.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
68.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
68.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
68.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
68.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
68.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
68.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
68.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
67.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
67.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
67.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
67.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
67.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
66.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
66.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
66.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
66.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
66.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
65.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
65.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
64.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
64.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
64.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
64.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
64.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
64.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
63.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
63.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
63.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
63.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
63.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
63.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
63.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
63.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
62.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
62.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
62.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
62.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
62.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
61.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
61.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
61.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
61.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
61.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
60.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
60.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
60.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
60.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
60.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
60.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
60.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
60.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
59.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
59.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
59.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
59.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
59.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
59.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
59.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
59.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
58.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
58.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
58.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
58.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
58.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
57.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
57.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
57.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
57.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
56.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
56.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
56.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
56.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
56.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
55.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
55.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
55.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
55.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
55.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
55.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
55.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
54.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
54.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
54.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
54.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
54.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
54.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
54.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
54.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
53.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
53.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
53.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
53.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
53.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
53.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
52.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
52.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
52.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
52.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
52.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
51.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
51.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
51.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
51.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
51.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
51.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
51.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
51.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
51.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
50.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
50.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
50.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
50.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
50.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
50.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
50.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
50.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
50.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
49.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
49.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
49.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
49.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
49.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
49.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
49.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
49.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
49.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
49.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
48.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
48.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
48.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
48.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
48.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
48.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
47.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
47.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
47.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
47.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
47.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
47.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
47.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
47.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
46.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
46.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
46.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
46.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
46.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
46.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
46.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
46.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
45.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
45.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
45.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
45.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
45.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
45.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
45.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
45.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
45.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
44.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
44.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
44.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
44.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
44.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
43.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
43.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
43.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
43.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
43.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
43.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
42.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
42.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
42.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
42.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
42.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
41.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
41.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
41.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
41.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
41.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
41.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
40.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
40.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
40.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
40.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
40.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
40.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
40.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
40.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
39.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
39.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
39.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
39.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
39.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
37.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
37.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
37.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
37.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
37.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
37.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
36.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
36.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
36.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
36.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
35.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
35.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
34.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
34.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
33.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
33.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
32.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
32.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
32.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
32.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
31.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
31.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
30.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
29.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
29.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
29.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
29.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
28.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
28.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
27.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
27.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
22.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
REEP5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.0
Number of samples
231
Samples
Sample
Description
TPM
DO45097
0 years, male, NA, stage:3, alive, 1620 days
125.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
105.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
104.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
94.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
93.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
91.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
87.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
84.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
82.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
81.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
81.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
79.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
78.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
77.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
76.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
75.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
74.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
74.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
72.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
72.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
72.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
71.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
71.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
70.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
70.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
69.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
68.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
68.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
68.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
68.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
66.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
65.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
65.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
65.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
65.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
64.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
63.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
63.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
62.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
62.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
62.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
62.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
61.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
61.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
61.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
61.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
61.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
60.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
60.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
60.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
60.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
59.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
59.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
59.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
59.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
59.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
59.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
59.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
58.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
58.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
58.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
58.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
58.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
57.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
57.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
57.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
56.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
56.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
56.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
56.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
55.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
55.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
54.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
54.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
54.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
54.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
53.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
53.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
53.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
53.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
52.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
52.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
52.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
52.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
51.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
51.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
51.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
51.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
50.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
50.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
50.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
50.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
50.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
49.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
49.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
49.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
49.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
49.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
49.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
48.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
48.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
48.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
48.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
47.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
47.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
47.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
47.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
47.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
47.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
47.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
46.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
46.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
46.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
46.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
45.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
45.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
45.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
45.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
45.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
44.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
44.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
44.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
44.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
44.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
44.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
44.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
44.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
43.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
43.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
43.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
43.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
43.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
42.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
42.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
42.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
42.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
42.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
42.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
42.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
41.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
41.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
41.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
41.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
41.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
41.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
41.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
41.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
41.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
41.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
41.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
41.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
40.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
40.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
40.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
40.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
40.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
40.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
40.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
40.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
40.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
39.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
39.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
39.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
39.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
39.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
39.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
38.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
38.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
38.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
37.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
37.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
36.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
36.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
36.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
36.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
36.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
35.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
34.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
34.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
34.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
33.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
33.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
33.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
30.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
30.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
29.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
29.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
28.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1022
Normal
0.9
1027
Tumor
0.9
261
Tumor
0.8
922
Normal
0.8
481
Tumor
0.8
955
Tumor
0.8
484
Normal
0.7
554
Normal
0.7
1032
Normal
0.7
954
Normal
0.7
915
Tumor
0.7
857
Tumor
0.7
518
Normal
0.7
938
Normal
0.7
1014
Normal
0.7
526
Normal
0.7
745
Tumor
0.7
944
Normal
0.7
353
Tumor
0.6
878
Normal
0.6
1041
Tumor
0.6
524
Normal
0.6
976
Normal
0.6
546
Normal
0.6
698
Normal
0.6
864
Normal
0.6
918
Normal
0.6
466
Normal
0.6
926
Normal
0.6
958
Normal
0.6
744
Normal
0.6
494
Normal
0.5
128
Normal
0.5
572
Normal
0.5
867
Tumor
0.5
488
Normal
0.5
412
Normal
0.5
916
Normal
0.5
882
Normal
0.5
824
Normal
0.5
448
Normal
0.5
866
Normal
0.5
723
Tumor
0.5
956
Normal
0.5
616
Normal
0.5
492
Normal
0.5
968
Normal
0.5
952
Normal
0.5
1026
Normal
0.5
742
Normal
0.5
328
Normal
0.5
852
Normal
0.5
738
Normal
0.5
1028
Normal
0.5
364
Normal
0.4
534
Normal
0.4
356
Normal
0.4
142
Normal
0.4
981
Tumor
0.4
924
Normal
0.4
714
Normal
0.4
862
Normal
0.4
516
Normal
0.4
514
Normal
0.4
966
Normal
0.4
538
Normal
0.4
696
Normal
0.4
816
Normal
0.4
755
Tumor
0.4
498
Normal
0.4
636
Normal
0.4
685
Tumor
0.4
984
Normal
0.4
728
Normal
0.4
785
Tumor
0.4
342
Normal
0.3
223
Tumor
0.3
415
Tumor
0.3
257
Tumor
0.3
715
Tumor
0.3
228
Normal
0.3
536
Normal
0.3
376
Normal
0.3
474
Normal
0.3
686
Normal
0.3
1043
Tumor
0.3
472
Normal
0.3
528
Normal
0.3
786
Normal
0.3
1044
Normal
0.3
914
Normal
0.3
778
Normal
0.3
756
Normal
0.3
911
Tumor
0.3
746
Normal
0.3
147
Tumor
0.3
1016
Normal
0.3
362
Normal
0.3
513
Tumor
0.3
212
Normal
0.3
615
Tumor
0.3
462
Normal
0.3
982
Normal
0.3
416
Normal
0.3
482
Normal
0.3
874
Normal
0.2
913
Tumor
0.2
557
Tumor
0.2
392
Normal
0.2
478
Normal
0.2
491
Tumor
0.2
137
Tumor
0.2
648
Normal
0.2
741
Tumor
0.2
171
Tumor
0.2
471
Tumor
0.2
468
Normal
0.2
868
Normal
0.2
1042
Normal
0.2
284
Normal
0.2
196
Normal
0.2
964
Normal
0.2
327
Tumor
0.2
662
Normal
0.2
568
Normal
0.2
912
Normal
0.2
286
Normal
0.1
716
Normal
0.1
1046
Normal
0.1
363
Tumor
0.1
861
Tumor
0.1
978
Normal
0.1
664
Normal
0.1
553
Tumor
0.1
818
Normal
0.1
436
Normal
0.1
1013
Tumor
0.1
641
Tumor
0.1
558
Normal
0.1
124
Normal
0.1
222
Normal
0.1
452
Normal
0.1
977
Tumor
0.1
272
Normal
0.1
525
Tumor
0.1
111
Normal
0.1
628
Normal
0.1
851
Tumor
0.1
858
Normal
0.1
312
Normal
0.1
232
Normal
0.1
884
Normal
0.1
422
Normal
0.0
368
Normal
0.0
963
Tumor
0.0
298
Normal
0.0
617
Tumor
0.0
148
Normal
0.0
214
Normal
0.0
262
Normal
0.0
863
Tumor
0.0
523
Tumor
0.0
224
Normal
0.0
865
Tumor
0.0
642
Normal
0.0
314
Normal
0.0
917
Tumor
0.0
975
Tumor
0.0
527
Tumor
0.0
925
Tumor
0.0
1025
Tumor
0.0
727
Tumor
0.0
426
Normal
0.0
332
Normal
0.0
618
Normal
0.0
344
Normal
0.0
431
Tumor
0.0
672
Normal
0.0
384
Normal
-0.1
114
Normal
-0.1
873
Tumor
-0.1
354
Normal
-0.1
533
Tumor
-0.1
627
Tumor
-0.1
697
Tumor
-0.1
366
Normal
-0.1
388
Normal
-0.1
396
Normal
-0.1
172
Normal
-0.1
435
Tumor
-0.1
564
Normal
-0.1
424
Normal
-0.1
358
Normal
-0.1
881
Tumor
-0.1
218
Normal
-0.1
186
Normal
-0.1
414
Normal
-0.2
278
Normal
-0.2
455
Tumor
-0.2
394
Normal
-0.2
268
Normal
-0.2
464
Normal
-0.2
456
Normal
-0.2
352
Normal
-0.2
493
Tumor
-0.2
135
Tumor
-0.2
267
Tumor
-0.2
258
Normal
-0.2
361
Tumor
-0.2
132
Normal
-0.2
574
Normal
-0.2
188
Normal
-0.2
487
Tumor
-0.2
923
Tumor
-0.2
187
Tumor
-0.2
921
Tumor
-0.2
517
Tumor
-0.2
467
Tumor
-0.2
724
Normal
-0.2
666
Normal
-0.2
1045
Tumor
-0.3
434
Normal
-0.3
146
Normal
-0.3
535
Tumor
-0.3
126
Normal
-0.3
162
Normal
-0.3
447
Tumor
-0.3
138
Normal
-0.3
777
Tumor
-0.3
815
Tumor
-0.3
386
Normal
-0.3
211
Tumor
-0.3
943
Tumor
-0.3
953
Tumor
-0.3
136
Normal
-0.3
428
Normal
-0.3
823
Tumor
-0.3
365
Tumor
-0.3
951
Tumor
-0.3
473
Tumor
-0.3
446
Normal
-0.3
421
Tumor
-0.3
444
Normal
-0.3
1031
Tumor
-0.4
445
Tumor
-0.4
161
Tumor
-0.4
385
Tumor
-0.4
737
Tumor
-0.4
355
Tumor
-0.4
635
Tumor
-0.4
537
Tumor
-0.4
185
Tumor
-0.4
817
Tumor
-0.4
883
Tumor
-0.4
393
Tumor
-0.4
967
Tumor
-0.4
123
Tumor
-0.4
722
Normal
-0.4
311
Tumor
-0.4
231
Tumor
-0.4
483
Tumor
-0.4
937
Tumor
-0.4
387
Tumor
-0.4
192
Normal
-0.4
423
Tumor
-0.4
213
Tumor
-0.4
145
Tumor
-0.5
814
Normal
-0.5
461
Tumor
-0.5
957
Tumor
-0.5
432
Normal
-0.5
341
Tumor
-0.5
427
Tumor
-0.5
411
Tumor
-0.5
965
Tumor
-0.5
131
Tumor
-0.5
127
Tumor
-0.5
433
Tumor
-0.5
383
Tumor
-0.6
983
Tumor
-0.6
191
Tumor
-0.6
375
Tumor
-0.6
451
Tumor
-0.6
1021
Tumor
-0.6
477
Tumor
-0.6
813
Tumor
-0.6
297
Tumor
-0.6
1015
Tumor
-0.6
515
Tumor
-0.6
195
Tumor
-0.6
227
Tumor
-0.6
563
Tumor
-0.6
331
Tumor
-0.7
413
Tumor
-0.7
721
Tumor
-0.7
713
Tumor
-0.7
217
Tumor
-0.7
285
Tumor
-0.7
497
Tumor
-0.7
271
Tumor
-0.7
221
Tumor
-0.7
695
Tumor
-0.7
571
Tumor
-0.8
141
Tumor
-0.8
647
Tumor
-0.8
395
Tumor
-0.8
443
Tumor
-0.8
357
Tumor
-0.9
665
Tumor
-0.9
277
Tumor
-0.9
391
Tumor
-0.9
113
Tumor
-0.9
283
Tumor
-0.9
877
Tumor
-1.0
743
Tumor
-1.0
545
Tumor
-1.0
567
Tumor
-1.0
663
Tumor
-1.0
661
Tumor
-1.0
463
Tumor
-1.0
343
Tumor
-1.0
313
Tumor
-1.1
465
Tumor
-1.1
112
Tumor
-1.2
573
Tumor
-1.3
351
Tumor
-1.3
367
Tumor
-1.3
125
Tumor
-1.3
425
Tumor
-1.5
671
Tumor
-1.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
