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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEDD8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
92.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
246.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
210.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
200.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
193.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
187.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
183.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
177.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
176.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
176.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
174.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
172.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
169.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
167.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
158.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
157.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
152.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
151.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
148.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
148.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
147.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
146.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
146.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
146.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
143.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
142.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
141.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
140.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
139.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
139.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
139.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
137.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
136.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
135.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
134.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
133.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
132.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
131.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
129.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
129.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
129.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
128.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
128.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
128.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
128.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
128.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
126.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
126.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
125.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
125.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
125.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
123.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
123.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
122.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
122.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
122.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
122.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
121.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
121.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
120.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
120.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
120.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
119.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
118.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
118.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
118.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
117.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
116.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
116.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
116.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
115.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
114.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
113.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
112.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
112.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
112.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
112.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
112.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
112.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
112.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
112.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
111.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
111.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
110.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
109.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
109.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
109.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
108.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
108.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
108.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
108.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
107.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
107.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
107.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
107.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
107.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
106.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
106.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
106.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
106.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
105.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
105.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
104.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
104.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
103.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
103.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
103.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
103.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
102.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
102.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
102.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
102.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
101.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
101.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
100.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
100.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
100.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
100.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
100.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
99.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
99.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
99.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
98.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
98.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
98.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
98.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
97.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
97.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
96.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
96.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
96.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
96.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
96.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
95.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
95.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
95.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
95.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
95.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
94.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
94.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
94.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
94.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
93.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
93.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
93.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
93.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
93.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
93.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
92.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
91.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
91.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
91.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
91.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
91.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
91.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
91.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
90.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
90.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
90.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
90.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
90.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
90.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
90.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
89.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
89.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
89.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
89.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
88.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
88.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
88.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
88.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
88.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
87.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
87.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
87.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
87.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
87.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
87.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
87.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
87.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
86.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
86.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
86.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
86.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
86.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
86.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
85.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
85.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
85.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
84.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
84.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
84.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
84.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
84.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
84.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
84.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
84.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
84.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
83.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
83.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
83.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
83.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
83.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
83.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
82.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
82.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
82.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
82.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
82.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
82.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
81.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
81.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
81.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
81.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
81.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
81.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
81.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
81.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
81.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
80.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
80.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
80.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
80.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
80.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
80.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
80.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
80.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
80.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
80.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
80.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
79.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
79.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
79.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
79.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
79.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
79.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
79.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
78.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
78.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
78.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
77.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
77.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
77.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
77.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
77.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
76.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
76.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
76.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
76.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
76.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
76.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
75.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
75.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
75.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
75.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
75.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
75.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
74.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
73.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
73.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
73.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
73.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
72.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
72.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
72.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
72.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
72.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
72.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
71.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
71.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
71.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
71.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
70.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
70.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
70.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
70.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
70.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
69.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
69.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
69.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
69.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
68.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
68.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
68.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
68.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
68.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
67.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
67.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
67.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
67.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
67.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
67.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
66.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
66.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
66.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
66.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
66.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
66.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
65.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
65.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
65.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
65.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
65.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
65.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
65.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
64.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
64.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
64.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
64.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
64.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
63.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
63.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
62.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
62.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
62.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
62.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
62.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
61.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
61.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
61.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
61.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
61.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
61.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
60.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
60.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
60.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
59.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
59.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
58.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
58.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
57.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
57.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
57.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
56.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
56.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
55.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
55.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
55.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
55.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
54.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
54.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
54.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
54.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
53.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
52.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
52.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
52.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
51.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
51.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
51.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
50.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
50.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
50.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
49.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
48.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
48.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
48.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
48.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
48.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
48.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
43.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
36.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEDD8 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
146.0
Number of samples
231
Samples
Sample
Description
TPM
DO23526
0 years, male, NA, stage:3, alive, 1050 days
423.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
413.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
411.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
408.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
387.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
330.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
327.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
300.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
296.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
271.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
269.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
260.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
259.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
258.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
252.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
250.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
248.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
241.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
241.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
241.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
240.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
238.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
236.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
231.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
229.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
222.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
217.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
214.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
212.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
211.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
211.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
210.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
206.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
206.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
201.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
199.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
197.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
196.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
195.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
192.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
192.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
191.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
189.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
189.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
185.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
180.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
179.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
178.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
177.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
176.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
176.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
171.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
171.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
171.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
169.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
166.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
162.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
162.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
159.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
158.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
158.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
158.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
156.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
156.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
155.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
155.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
154.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
154.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
153.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
152.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
152.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
151.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
150.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
150.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
150.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
149.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
149.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
148.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
148.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
147.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
147.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
146.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
146.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
146.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
145.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
142.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
142.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
142.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
142.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
141.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
141.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
141.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
141.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
140.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
140.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
139.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
138.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
137.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
137.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
136.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
136.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
136.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
136.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
135.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
134.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
134.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
134.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
134.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
132.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
131.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
131.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
131.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
130.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
130.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
130.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
130.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
130.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
130.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
130.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
129.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
129.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
129.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
129.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
129.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
129.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
128.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
128.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
127.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
127.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
127.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
126.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
126.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
125.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
125.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
125.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
124.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
124.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
123.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
123.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
122.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
121.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
121.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
121.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
121.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
120.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
119.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
119.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
118.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
118.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
118.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
118.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
117.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
117.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
115.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
114.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
113.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
113.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
112.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
111.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
111.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
111.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
110.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
110.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
108.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
108.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
107.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
107.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
107.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
106.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
106.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
106.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
106.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
106.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
106.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
105.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
105.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
105.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
104.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
104.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
102.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
102.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
101.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
100.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
100.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
100.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
100.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
99.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
98.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
98.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
97.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
97.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
96.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
95.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
94.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
94.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
94.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
93.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
92.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
91.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
90.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
90.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
90.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
90.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
88.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
88.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
88.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
88.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
88.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
87.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
87.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
87.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
87.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
83.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
80.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
79.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
79.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
79.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
79.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
78.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
76.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
76.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
70.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
64.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
62.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
61.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
58.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
58.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
57.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
54.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
54.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
42.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
0.9
473
Tumor
0.7
965
Tumor
0.7
525
Tumor
0.7
533
Tumor
0.7
571
Tumor
0.6
937
Tumor
0.6
527
Tumor
0.6
737
Tumor
0.6
481
Tumor
0.6
478
Normal
0.5
963
Tumor
0.5
545
Tumor
0.5
951
Tumor
0.5
777
Tumor
0.4
743
Tumor
0.4
1013
Tumor
0.4
513
Tumor
0.4
727
Tumor
0.4
472
Normal
0.4
917
Tumor
0.4
363
Tumor
0.4
483
Tumor
0.4
741
Tumor
0.4
745
Tumor
0.4
523
Tumor
0.4
534
Normal
0.4
537
Tumor
0.4
1025
Tumor
0.4
131
Tumor
0.4
967
Tumor
0.3
327
Tumor
0.3
922
Normal
0.3
958
Normal
0.3
695
Tumor
0.3
514
Normal
0.3
925
Tumor
0.3
926
Normal
0.3
553
Tumor
0.3
484
Normal
0.3
1041
Tumor
0.3
411
Tumor
0.3
964
Normal
0.3
943
Tumor
0.3
685
Tumor
0.3
516
Normal
0.3
923
Tumor
0.3
488
Normal
0.3
515
Tumor
0.3
546
Normal
0.3
497
Tumor
0.3
356
Normal
0.3
355
Tumor
0.3
283
Tumor
0.2
425
Tumor
0.2
916
Normal
0.2
863
Tumor
0.2
123
Tumor
0.2
474
Normal
0.2
447
Tumor
0.2
482
Normal
0.2
462
Normal
0.2
698
Normal
0.2
966
Normal
0.2
944
Normal
0.2
524
Normal
0.2
518
Normal
0.2
918
Normal
0.2
956
Normal
0.2
554
Normal
0.2
983
Tumor
0.2
953
Tumor
0.2
663
Tumor
0.2
526
Normal
0.2
723
Tumor
0.2
492
Normal
0.2
412
Normal
0.2
463
Tumor
0.2
498
Normal
0.2
517
Tumor
0.2
451
Tumor
0.2
921
Tumor
0.2
882
Normal
0.2
715
Tumor
0.2
724
Normal
0.2
415
Tumor
0.2
744
Normal
0.1
572
Normal
0.1
955
Tumor
0.1
477
Tumor
0.1
924
Normal
0.1
865
Tumor
0.1
212
Normal
0.1
976
Normal
0.1
285
Tumor
0.1
873
Tumor
0.1
528
Normal
0.1
912
Normal
0.1
1032
Normal
0.1
721
Tumor
0.1
1015
Tumor
0.1
277
Tumor
0.1
494
Normal
0.1
227
Tumor
0.1
431
Tumor
0.1
975
Tumor
0.1
267
Tumor
0.1
192
Normal
0.1
376
Normal
0.1
231
Tumor
0.1
416
Normal
0.1
877
Tumor
0.1
817
Tumor
0.1
393
Tumor
0.1
573
Tumor
0.1
1027
Tumor
0.1
364
Normal
0.1
196
Normal
0.1
661
Tumor
0.1
1022
Normal
0.1
878
Normal
0.1
785
Tumor
0.1
217
Tumor
0.1
716
Normal
0.1
471
Tumor
0.1
728
Normal
0.1
391
Tumor
0.1
938
Normal
0.1
493
Tumor
0.1
367
Tumor
0.1
714
Normal
0.1
814
Normal
0.1
357
Tumor
0.1
387
Tumor
0.1
978
Normal
0.1
952
Normal
0.1
142
Normal
0.1
738
Normal
0.1
257
Tumor
0.1
696
Normal
0.1
444
Normal
0.1
813
Tumor
0.0
914
Normal
0.0
1021
Tumor
0.0
742
Normal
0.0
713
Tumor
0.0
786
Normal
0.0
366
Normal
0.0
538
Normal
0.0
137
Tumor
0.0
191
Tumor
0.0
722
Normal
0.0
686
Normal
0.0
883
Tumor
0.0
136
Normal
0.0
884
Normal
0.0
968
Normal
0.0
161
Tumor
0.0
1046
Normal
0.0
535
Tumor
0.0
911
Tumor
0.0
915
Tumor
0.0
568
Normal
0.0
977
Tumor
0.0
858
Normal
0.0
452
Normal
0.0
127
Tumor
0.0
261
Tumor
0.0
1016
Normal
0.0
913
Tumor
0.0
861
Tumor
0.0
1026
Normal
0.0
466
Normal
0.0
815
Tumor
0.0
286
Normal
0.0
455
Tumor
0.0
984
Normal
0.0
112
Tumor
0.0
487
Tumor
0.0
448
Normal
0.0
558
Normal
0.0
563
Tumor
0.0
464
Normal
0.0
135
Tumor
0.0
385
Tumor
0.0
1042
Normal
0.0
421
Tumor
0.0
1044
Normal
0.0
746
Normal
0.0
222
Normal
0.0
982
Normal
0.0
857
Tumor
0.0
881
Tumor
0.0
435
Tumor
0.0
361
Tumor
0.0
823
Tumor
0.0
362
Normal
0.0
778
Normal
0.0
851
Tumor
0.0
365
Tumor
0.0
258
Normal
0.0
868
Normal
0.0
647
Tumor
0.0
954
Normal
0.0
755
Tumor
0.0
446
Normal
0.0
432
Normal
0.0
1031
Tumor
0.0
224
Normal
0.0
375
Tumor
0.0
461
Tumor
0.0
186
Normal
0.0
1014
Normal
0.0
221
Tumor
0.0
617
Tumor
0.0
671
Tumor
0.0
424
Normal
0.0
697
Tumor
0.0
395
Tumor
0.0
328
Normal
0.0
311
Tumor
0.0
756
Normal
0.0
313
Tumor
-0.1
297
Tumor
-0.1
864
Normal
-0.1
465
Tumor
-0.1
138
Normal
-0.1
146
Normal
-0.1
818
Normal
-0.1
132
Normal
-0.1
125
Tumor
-0.1
228
Normal
-0.1
128
Normal
-0.1
981
Tumor
-0.1
218
Normal
-0.1
434
Normal
-0.1
436
Normal
-0.1
148
Normal
-0.1
574
Normal
-0.1
271
Tumor
-0.1
445
Tumor
-0.1
195
Tumor
-0.1
468
Normal
-0.1
185
Tumor
-0.1
428
Normal
-0.1
414
Normal
-0.1
384
Normal
-0.1
874
Normal
-0.1
1043
Tumor
-0.1
427
Tumor
-0.1
351
Tumor
-0.1
467
Tumor
-0.1
443
Tumor
-0.1
426
Normal
-0.1
162
Normal
-0.1
284
Normal
-0.1
456
Normal
-0.1
232
Normal
-0.1
268
Normal
-0.1
147
Tumor
-0.1
866
Normal
-0.1
852
Normal
-0.1
141
Tumor
-0.1
824
Normal
-0.1
171
Tumor
-0.2
352
Normal
-0.2
862
Normal
-0.2
396
Normal
-0.2
665
Tumor
-0.2
342
Normal
-0.2
413
Tumor
-0.2
422
Normal
-0.2
213
Tumor
-0.2
111
Normal
-0.2
272
Normal
-0.2
648
Normal
-0.2
423
Tumor
-0.2
353
Tumor
-0.2
635
Tumor
-0.2
564
Normal
-0.2
368
Normal
-0.2
491
Tumor
-0.2
114
Normal
-0.2
211
Tumor
-0.2
223
Tumor
-0.2
615
Tumor
-0.2
567
Tumor
-0.2
383
Tumor
-0.2
331
Tumor
-0.2
187
Tumor
-0.2
298
Normal
-0.2
816
Normal
-0.2
145
Tumor
-0.2
433
Tumor
-0.2
536
Normal
-0.2
386
Normal
-0.2
262
Normal
-0.2
113
Tumor
-0.2
672
Normal
-0.2
344
Normal
-0.2
664
Normal
-0.2
662
Normal
-0.2
172
Normal
-0.2
394
Normal
-0.2
867
Tumor
-0.2
214
Normal
-0.2
188
Normal
-0.2
1028
Normal
-0.2
641
Tumor
-0.3
616
Normal
-0.3
312
Normal
-0.3
358
Normal
-0.3
627
Tumor
-0.3
354
Normal
-0.3
343
Tumor
-0.3
618
Normal
-0.3
1045
Tumor
-0.3
124
Normal
-0.3
126
Normal
-0.3
557
Tumor
-0.3
392
Normal
-0.3
332
Normal
-0.3
388
Normal
-0.3
666
Normal
-0.3
314
Normal
-0.3
278
Normal
-0.4
628
Normal
-0.4
642
Normal
-0.4
636
Normal
-0.4
341
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
