MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.7 nTPM
HPA Brain:9.6 nTPM
GTEx:29.7 nTPM
FANTOM5:39.1 Scaled Tags Per Million
Pig:35.3 nTPM
Mouse:66.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 9.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.7
2019 Male, age 18, unknown 8.4
2411 Female, age 72, unknown 8.0
1870 Female, age 42, unknown 7.7
1827 Male, age 72, unknown 7.1
2586 Male, age 75, left hemisphere 6.9
1833 Male, age 53, unknown 6.5
2219 Male, age 76, both hemispheres 6.3
2828 Female, age 72, unknown 6.2
1830 Male, age 51, unknown 5.4
2666 Male, age 74, left hemisphere 4.9
Dorsal raphe nucleus
nTPM: 8.7
2750 Male, age 76, both hemispheres 10.4
2016 Female, age 72, unknown 8.8
1828 Male, age 53, unknown 8.6
2298 Female, age 72, unknown 8.1
2047 Male, age 72, unknown 7.6
Inferior colliculus
nTPM: 7.5
2097 Female, age 72, unknown 9.0
1848 Female, age 42, unknown 8.0
1890 Male, age 53, unknown 8.0
2849 Male, age 72, unknown 4.9
Median raphe nucleus
nTPM: 8.3
2220 Male, age 76, midline 8.3
Periaquaductal grey, anterior
nTPM: 9.0
1947 Male, age 18, unknown 9.6
2502 Female, age 75, unknown 9.3
1795 Male, age 51, unknown 8.0
Periaquaductal grey, dorsal
nTPM: 7.0
1840 Male, age 53, unknown 8.1
2464 Female, age 72, unknown 6.9
2850 Male, age 76, both hemispheres 6.8
1831 Male, age 72, unknown 6.2
Periaquaductal grey, lateral
nTPM: 6.4
2272 Male, age 74, both hemispheres 7.9
2053 Male, age 18, unknown 6.0
2140 Male, age 76, both hemispheres 5.3
Pretectal area
nTPM: 8.6
1816 Male, age 51, unknown 10.1
2007 Male, age 72, unknown 9.7
2667 Female, age 75, unknown 9.7
2273 Male, age 74, both hemispheres 9.5
2316 Male, age 76, right hemisphere 9.5
1817 Female, age 42, unknown 9.2
1944 Female, age 72, unknown 8.2
2224 Female, age 72, unknown 7.6
2407 Male, age 75, both hemispheres 7.6
1815 Male, age 53, unknown 7.2
2825 Male, age 18, unknown 5.7
Red nucleus
nTPM: 8.4
1821 Female, age 72, unknown 10.3
2503 Female, age 72, unknown 9.9
1954 Female, age 42, unknown 9.7
2725 Female, age 75, unknown 9.7
2823 Male, age 76, right hemisphere 9.5
1865 Male, age 51, unknown 8.6
1904 Male, age 53, unknown 8.6
2785 Male, age 18, unknown 8.5
2227 Male, age 72, unknown 8.3
2769 Male, age 72, unknown 7.2
2588 Male, age 74, left hemisphere 5.3
2584 Male, age 75, left hemisphere 5.2
Substantia nigra
nTPM: 9.6
2241 Male, age 72, unknown 15.4
1916 Female, age 42, unknown 13.9
1851 Male, age 51, unknown 11.2
1941 Male, age 53, unknown 9.5
1889 Female, age 72, unknown 8.4
2409 Female, age 72, unknown 8.4
2699 Male, age 18, unknown 8.2
2583 Male, age 75, right hemisphere 7.2
2590 Female, age 75, unknown 7.0
2665 Male, age 74, both hemispheres 6.9
Superior colliculus
nTPM: 7.4
2261 Male, age 18, unknown 9.2
2087 Female, age 72, unknown 8.2
2587 Male, age 74, left hemisphere 8.2
1995 Male, age 72, unknown 7.5
1839 Male, age 51, unknown 7.4
1895 Male, age 76, right hemisphere 7.2
2668 Female, age 75, unknown 6.9
1796 Male, age 53, unknown 6.8
1913 Female, age 42, unknown 6.5
2664 Male, age 75, both hemispheres 5.7
Ventral tegmental area
nTPM: 9.5
1915 Female, age 42, unknown 12.9
2021 Male, age 53, unknown 9.1
2218 Male, age 76, both hemispheres 9.0
2223 Female, age 72, unknown 8.8
2410 Female, age 72, unknown 8.5
1942 Male, age 51, unknown 8.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.7
Samples: 139

Max nTPM: 61.1
Min nTPM: 7.4
Std nTPM: 9.7
Median nTPM: 29.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 61.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 54.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 54.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 52.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 52.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 50.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 47.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 47.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 46.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 46.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 46.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.1
FF:10158-103A5 76 years, female 39.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.3
Samples: 4

Max nTPM: 42.5
Min nTPM: 22.3
Sample A Female 42.5
Sample B Female 23.5
Sample C Male 29.0
Sample D Male 22.3
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 38.4
Min nTPM: 26.1
Sample A Female 38.4
Sample B Female 26.1
Sample C Male 33.5
Sample D Male 26.3
Periaqueductal gray
nTPM: 24.1
Samples: 3

Max nTPM: 26.5
Min nTPM: 21.5
Sample B Female 21.5
Sample C Male 26.5
Sample D Male 24.3
Superior colliculi
nTPM: 35.3
Samples: 4

Max nTPM: 43.2
Min nTPM: 29.1
Sample A Female 37.8
Sample B Female 31.0
Sample C Male 43.2
Sample D Male 29.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 66.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 66.0
Samples: 4

Max nTPM: 69.8
Min nTPM: 64.4
Sample A Male 69.8
Sample B Male 64.7
Sample C Female 64.4
Sample D Female 65.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
75828179 Antisense, RP_060601_01_F03, Mouse strain C57BL/6J (56 days, male) 0.2

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