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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COPB1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
134.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
115.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
112.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
106.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
87.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
82.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
82.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
82.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
81.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
77.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
72.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
70.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
69.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
68.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
67.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
67.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
67.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
67.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
67.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
66.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
65.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
65.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
63.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
62.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
62.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
61.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
61.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
61.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
59.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
58.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
58.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
58.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
58.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
56.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
56.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
54.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
53.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
53.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
53.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
52.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
52.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
51.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
50.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
50.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
50.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
49.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
49.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
49.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
48.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
48.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
48.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
47.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
47.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
47.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
47.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
46.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
46.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
46.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
46.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
45.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
45.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
45.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
45.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
45.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
45.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
44.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
44.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
43.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
42.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
42.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
41.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
41.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
41.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
40.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
40.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
39.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
39.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
39.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
39.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
39.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
38.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
38.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
38.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
38.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
37.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
37.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
37.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
37.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
37.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
36.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
36.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
36.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
36.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
35.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
35.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
35.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
35.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
35.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
35.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
34.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
34.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
34.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
33.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
33.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
33.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
33.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
32.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
31.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
31.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
31.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
30.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
30.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
30.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
29.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
29.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
29.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
28.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
27.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
27.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
25.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
24.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
21.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COPB1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.5
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
113.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
112.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
97.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
94.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
85.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
83.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
81.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
77.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
74.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
73.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
73.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
72.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
72.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
71.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
71.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
70.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
70.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
68.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
68.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
68.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
67.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
66.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
65.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
63.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
63.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
63.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
62.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
62.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
62.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
62.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
62.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
62.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
61.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
61.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
61.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
61.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
60.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
60.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
60.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
59.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
59.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
58.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
58.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
58.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
57.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
57.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
56.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
55.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
55.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
55.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
55.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
55.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
54.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
54.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
54.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
54.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
54.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
53.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
53.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
53.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
53.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
52.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
52.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
51.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
51.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
51.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
49.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
49.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
48.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
48.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
48.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
48.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
48.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
48.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
48.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
47.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
47.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
47.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
46.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
46.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
46.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
46.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
46.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
46.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
45.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
45.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
45.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
45.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
45.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
45.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
44.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
44.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
44.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
44.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
43.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
43.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
43.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
43.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
43.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
42.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
42.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
42.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
42.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
42.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
42.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
41.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
41.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
41.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
41.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
41.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
41.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
40.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
40.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
40.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
40.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
39.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
39.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
39.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
39.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
39.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
38.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
38.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
38.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
38.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
38.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
37.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
37.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
37.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
37.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
37.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
36.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
36.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
36.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
36.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
36.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
35.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
35.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
35.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
35.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
35.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
35.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
35.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
35.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
35.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
34.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
33.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
33.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
33.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
32.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
32.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
30.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
30.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
27.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
24.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
24.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
327
Tumor
0.6
285
Tumor
0.5
271
Tumor
0.5
1021
Tumor
0.5
1027
Tumor
0.4
713
Tumor
0.4
743
Tumor
0.4
745
Tumor
0.4
697
Tumor
0.3
1025
Tumor
0.3
937
Tumor
0.3
523
Tumor
0.3
113
Tumor
0.3
557
Tumor
0.3
353
Tumor
0.3
527
Tumor
0.3
721
Tumor
0.3
471
Tumor
0.3
135
Tumor
0.2
145
Tumor
0.2
125
Tumor
0.2
257
Tumor
0.2
1015
Tumor
0.2
331
Tumor
0.2
851
Tumor
0.2
443
Tumor
0.2
967
Tumor
0.2
147
Tumor
0.2
913
Tumor
0.2
911
Tumor
0.2
823
Tumor
0.2
813
Tumor
0.2
368
Normal
0.2
385
Tumor
0.2
537
Tumor
0.2
817
Tumor
0.2
227
Tumor
0.2
983
Tumor
0.2
187
Tumor
0.2
221
Tumor
0.2
724
Normal
0.2
463
Tumor
0.2
191
Tumor
0.2
921
Tumor
0.2
617
Tumor
0.2
195
Tumor
0.2
641
Tumor
0.2
395
Tumor
0.2
951
Tumor
0.2
881
Tumor
0.1
283
Tumor
0.1
685
Tumor
0.1
467
Tumor
0.1
728
Normal
0.1
526
Normal
0.1
815
Tumor
0.1
213
Tumor
0.1
528
Normal
0.1
925
Tumor
0.1
865
Tumor
0.1
868
Normal
0.1
755
Tumor
0.1
111
Normal
0.1
955
Tumor
0.1
223
Tumor
0.1
573
Tumor
0.1
481
Tumor
0.1
427
Tumor
0.1
393
Tumor
0.1
286
Normal
0.1
277
Tumor
0.1
451
Tumor
0.1
462
Normal
0.1
136
Normal
0.1
217
Tumor
0.1
126
Normal
0.1
123
Tumor
0.1
114
Normal
0.1
635
Tumor
0.1
545
Tumor
0.1
923
Tumor
0.1
218
Normal
0.1
211
Tumor
0.1
917
Tumor
0.1
421
Tumor
0.1
1043
Tumor
0.1
978
Normal
0.1
212
Normal
0.1
311
Tumor
0.1
665
Tumor
0.1
824
Normal
0.1
148
Normal
0.1
975
Tumor
0.1
124
Normal
0.1
487
Tumor
0.1
647
Tumor
0.1
132
Normal
0.1
413
Tumor
0.1
952
Normal
0.1
738
Normal
0.1
533
Tumor
0.1
436
Normal
0.1
1026
Normal
0.1
981
Tumor
0.1
563
Tumor
0.1
1016
Normal
0.0
262
Normal
0.0
553
Tumor
0.0
435
Tumor
0.0
514
Normal
0.0
267
Tumor
0.0
412
Normal
0.0
696
Normal
0.0
446
Normal
0.0
358
Normal
0.0
864
Normal
0.0
867
Tumor
0.0
564
Normal
0.0
722
Normal
0.0
474
Normal
0.0
1044
Normal
0.0
138
Normal
0.0
558
Normal
0.0
222
Normal
0.0
434
Normal
0.0
671
Tumor
0.0
1014
Normal
0.0
141
Tumor
0.0
376
Normal
0.0
968
Normal
0.0
341
Tumor
0.0
535
Tumor
0.0
162
Normal
0.0
636
Normal
0.0
416
Normal
0.0
786
Normal
0.0
363
Tumor
0.0
746
Normal
0.0
258
Normal
0.0
778
Normal
0.0
367
Tumor
0.0
477
Tumor
0.0
396
Normal
0.0
482
Normal
0.0
356
Normal
0.0
137
Tumor
0.0
518
Normal
0.0
228
Normal
0.0
912
Normal
0.0
914
Normal
0.0
272
Normal
0.0
284
Normal
0.0
414
Normal
0.0
387
Tumor
0.0
214
Normal
0.0
131
Tumor
0.0
461
Tumor
0.0
515
Tumor
0.0
1028
Normal
0.0
343
Tumor
0.0
517
Tumor
0.0
383
Tumor
0.0
858
Normal
0.0
362
Normal
0.0
714
Normal
0.0
391
Tumor
0.0
814
Normal
0.0
984
Normal
0.0
1022
Normal
0.0
877
Tumor
0.0
816
Normal
0.0
422
Normal
0.0
944
Normal
0.0
352
Normal
0.0
648
Normal
0.0
188
Normal
0.0
171
Tumor
0.0
447
Tumor
0.0
742
Normal
0.0
232
Normal
0.0
664
Normal
0.0
918
Normal
0.0
926
Normal
0.0
392
Normal
0.0
1042
Normal
0.0
727
Tumor
0.0
1046
Normal
0.0
534
Normal
0.0
1031
Tumor
0.0
957
Tumor
0.0
344
Normal
0.0
186
Normal
0.0
128
Normal
0.0
432
Normal
0.0
185
Tumor
0.0
142
Normal
0.0
472
Normal
0.0
448
Normal
0.0
483
Tumor
0.0
536
Normal
0.0
546
Normal
0.0
424
Normal
0.0
524
Normal
0.0
426
Normal
0.0
963
Tumor
0.0
884
Normal
0.0
342
Normal
0.0
642
Normal
0.0
394
Normal
0.0
666
Normal
0.0
862
Normal
0.0
328
Normal
0.0
196
Normal
-0.1
568
Normal
-0.1
433
Tumor
-0.1
943
Tumor
-0.1
428
Normal
-0.1
127
Tumor
-0.1
916
Normal
-0.1
852
Normal
-0.1
464
Normal
-0.1
278
Normal
-0.1
716
Normal
-0.1
964
Normal
-0.1
386
Normal
-0.1
874
Normal
-0.1
466
Normal
-0.1
488
Normal
-0.1
686
Normal
-0.1
172
Normal
-0.1
863
Tumor
-0.1
966
Normal
-0.1
574
Normal
-0.1
493
Tumor
-0.1
723
Tumor
-0.1
1032
Normal
-0.1
982
Normal
-0.1
364
Normal
-0.1
297
Tumor
-0.1
878
Normal
-0.1
455
Tumor
-0.1
715
Tumor
-0.1
354
Normal
-0.1
662
Normal
-0.1
661
Tumor
-0.1
146
Normal
-0.1
366
Normal
-0.1
965
Tumor
-0.1
618
Normal
-0.1
616
Normal
-0.1
866
Normal
-0.1
1041
Tumor
-0.1
384
Normal
-0.1
468
Normal
-0.1
388
Normal
-0.1
497
Tumor
-0.1
572
Normal
-0.1
357
Tumor
-0.1
938
Normal
-0.1
956
Normal
-0.1
494
Normal
-0.1
861
Tumor
-0.1
192
Normal
-0.1
268
Normal
-0.1
1045
Tumor
-0.1
567
Tumor
-0.1
922
Normal
-0.1
883
Tumor
-0.1
312
Normal
-0.1
444
Normal
-0.1
756
Normal
-0.1
261
Tumor
-0.1
698
Normal
-0.1
365
Tumor
-0.1
977
Tumor
-0.1
958
Normal
-0.1
628
Normal
-0.1
456
Normal
-0.1
361
Tumor
-0.1
298
Normal
-0.1
484
Normal
-0.1
445
Tumor
-0.1
452
Normal
-0.1
332
Normal
-0.1
954
Normal
-0.1
924
Normal
-0.1
525
Tumor
-0.1
976
Normal
-0.1
415
Tumor
-0.1
314
Normal
-0.1
873
Tumor
-0.1
355
Tumor
-0.1
554
Normal
-0.1
161
Tumor
-0.1
492
Normal
-0.1
498
Normal
-0.1
224
Normal
-0.1
351
Tumor
-0.1
777
Tumor
-0.1
744
Normal
-0.1
478
Normal
-0.1
882
Normal
-0.2
411
Tumor
-0.2
231
Tumor
-0.2
513
Tumor
-0.2
741
Tumor
-0.2
112
Tumor
-0.2
672
Normal
-0.2
737
Tumor
-0.2
516
Normal
-0.2
615
Tumor
-0.2
313
Tumor
-0.2
818
Normal
-0.2
663
Tumor
-0.2
695
Tumor
-0.2
857
Tumor
-0.2
915
Tumor
-0.2
431
Tumor
-0.2
1013
Tumor
-0.2
491
Tumor
-0.2
627
Tumor
-0.2
375
Tumor
-0.2
423
Tumor
-0.2
465
Tumor
-0.2
571
Tumor
-0.2
425
Tumor
-0.3
538
Normal
-0.3
953
Tumor
-0.3
473
Tumor
-0.3
785
Tumor
-0.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
