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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
103.9
nTPM
FANTOM5:
181.6
Scaled Tags Per Million
Pig:
41.2
nTPM
Allen mouse:
6.0
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
103.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 103.9
2301
Female, age 85, both hemispheres
114.2
2188
Female, age 91, both hemispheres
105.9
2090
Male, age 80, both hemispheres
101.9
1984
Male, age 76, both hemispheres
93.6
Dorsal cochlear nucleus nTPM: 99.1
2802
Male, age 74, right hemisphere
109.4
2378
Male, age 80, both hemispheres
104.2
2187
Female, age 91, both hemispheres
97.1
2058
Male, age 76, both hemispheres
93.4
2370
Male, age 61, both hemispheres
91.2
Dorsal tegmental nucleus nTPM: 91.4
2326
Male, age 74, both hemispheres
99.3
2083
Male, age 80, both hemispheres
96.5
2358
Male, age 61, both hemispheres
85.6
1936
Male, age 76, left hemisphere
84.2
Dorsolateral tegmental area nTPM: 87.8
2654
Male, age 80, both hemispheres
95.8
2751
Female, age 85, both hemispheres
95.4
2337
Male, age 61, both hemispheres
91.9
2141
Male, age 76, both hemispheres
78.9
2360
Male, age 74, both hemispheres
77.0
Kolliker-Fuse nucleus nTPM: 91.9
2793
Female, age 91, left hemisphere
116.8
2163
Male, age 80, both hemispheres
92.9
2315
Male, age 76, right hemisphere
66.1
Lateral lemniscal nuclei nTPM: 96.9
2320
Female, age 91, left hemisphere
112.6
2169
Male, age 76, both hemispheres
99.4
2453
Male, age 74, right hemisphere
96.2
2746
Female, age 85, left hemisphere
91.5
2036
Male, age 80, both hemispheres
84.9
Lateral parabrachial nucleus nTPM: 94.4
2013
Male, age 80, both hemispheres
98.2
2139
Female, age 85, right hemisphere
95.6
2790
Male, age 61, both hemispheres
93.2
2792
Male, age 76, both hemispheres
90.8
Lateral vestibular nucleus nTPM: 98.4
2311
Male, age 80, both hemispheres
101.9
2184
Male, age 76, both hemispheres
94.8
Locus coeruleus nTPM: 72.5
2720
Male, age 74, both hemispheres
85.8
2162
Male, age 80, both hemispheres
82.3
2317
Female, age 72, unknown
72.8
2788
Male, age 74, unknown
70.8
2014
Male, age 55, unknown
67.9
2123
Female, age 91, both hemispheres
67.6
1980
Male, age 76, both hemispheres
60.2
Medial parabrachial nucleus nTPM: 95.1
2463
Female, age 85, right hemisphere
97.5
2786
Male, age 76, both hemispheres
95.8
2170
Female, age 91, both hemispheres
95.1
2854
Male, age 80, both hemispheres
94.6
2156
Male, age 61, both hemispheres
92.3
Medial periolivary nuclei nTPM: 96.1
2458
Female, age 91, both hemispheres
107.8
2171
Female, age 85, both hemispheres
99.0
2081
Male, age 80, both hemispheres
98.8
2063
Male, age 76, both hemispheres
92.0
2791
Male, age 74, right hemisphere
82.9
Motor facial nucleus nTPM: 98.0
2697
Female, age 85, both hemispheres
111.2
2327
Male, age 80, both hemispheres
108.6
2795
Female, age 91, both hemispheres
98.8
2062
Male, age 76, both hemispheres
93.9
2365
Male, age 74, right hemisphere
88.8
2126
Male, age 61, both hemispheres
86.7
Motor trigeminal nucleus nTPM: 95.0
2321
Female, age 91, both hemispheres
105.7
2560
Male, age 74, both hemispheres
96.4
2079
Male, age 80, both hemispheres
92.2
2335
Male, age 61, both hemispheres
91.5
2309
Male, age 76, both hemispheres
88.9
Nuclei of the trapezoid body nTPM: 95.7
2166
Male, age 80, both hemispheres
101.7
2368
Female, age 91, both hemispheres
100.5
1983
Male, age 76, both hemispheres
96.2
2159
Male, age 61, both hemispheres
91.6
2735
Female, age 85, both hemispheres
88.7
Nucleus raphe magnus nTPM: 91.8
2328
Male, age 80, both hemispheres
103.0
2459
Female, age 91, both hemispheres
95.2
2172
Female, age 85, both hemispheres
91.1
2455
Male, age 74, both hemispheres
89.2
2051
Male, age 76, both hemispheres
88.4
2160
Male, age 61, both hemispheres
84.2
Paramedian reticular nucleus nTPM: 85.3
2050
Female, age 85, both hemispheres
90.2
2057
Male, age 80, both hemispheres
86.9
2052
Male, age 76, both hemispheres
84.3
2313
Male, age 61, both hemispheres
80.0
Pedunculopontine tegmental nucleus nTPM: 89.9
2338
Male, age 61, both hemispheres
96.9
2334
Male, age 80, both hemispheres
86.8
1921
Female, age 85, both hemispheres
86.0
Pontine nuclei nTPM: 99.3
2319
Female, age 91, both hemispheres
107.7
1863
Male, age 55, unknown
103.9
2115
Male, age 80, left hemisphere
103.7
2454
Male, age 74, left hemisphere
103.1
2109
Female, age 72, unknown
101.1
1968
Male, age 76, left hemisphere
99.7
2787
Female, age 85, both hemispheres
96.0
2727
Male, age 61, right hemisphere
79.2
Pontine raphe nucleus nTPM: 82.0
2122
Female, age 85, midline
85.1
2853
Male, age 76, midline
78.9
Posteroventral cochlear nucleus nTPM: 101.4
2135
Female, age 91, both hemispheres
114.9
2341
Male, age 80, both hemispheres
110.7
2070
Male, age 76, both hemispheres
96.5
2371
Male, age 61, both hemispheres
93.6
2752
Female, age 85, both hemispheres
91.1
Principal sensory trigeminal nucleus nTPM: 95.1
2367
Female, age 91, left hemisphere
110.0
2324
Male, age 76, both hemispheres
94.7
2008
Male, age 80, left hemisphere
88.3
2158
Male, age 61, both hemispheres
87.5
Reticular pontine nucleus, caudal nTPM: 101.4
2457
Female, age 91, both hemispheres
105.8
2559
Male, age 74, both hemispheres
105.0
2332
Male, age 80, right hemisphere
101.8
2092
Male, age 76, both hemispheres
93.0
Reticular pontine nucleus, oral nTPM: 97.4
2366
Female, age 91, both hemispheres
121.3
2167
Male, age 76, both hemispheres
93.7
2361
Male, age 74, both hemispheres
91.9
1939
Male, age 80, both hemispheres
91.2
2012
Female, age 85, both hemispheres
88.7
Reticulotegmental nucleus nTPM: 98.0
2322
Female, age 91, both hemispheres
105.3
2452
Male, age 74, both hemispheres
104.4
2333
Male, age 80, both hemispheres
97.6
2325
Male, age 76, both hemispheres
84.7
Spinal trigeminal nucleus, oral nTPM: 91.6
2164
Male, age 80, both hemispheres
98.4
1978
Male, age 76, both hemispheres
94.3
2737
Female, age 85, both hemispheres
82.0
Subcoeruleus area nTPM: 93.5
2451
Male, age 74, both hemispheres
104.3
2369
Female, age 85, left hemisphere
98.1
2089
Male, age 76, left hemisphere
90.9
1958
Male, age 80, both hemispheres
88.4
2323
Female, age 91, left hemisphere
85.8
Superior olive nTPM: 96.0
2561
Female, age 91, both hemispheres
106.7
2329
Male, age 80, right hemisphere
105.0
2020
Male, age 76, both hemispheres
93.6
1875
Female, age 85, both hemispheres
92.0
2364
Male, age 74, right hemisphere
82.6
Ventral periolivary nuclei nTPM: 99.2
2794
Female, age 91, left hemisphere
104.9
2130
Female, age 85, both hemispheres
98.5
2165
Male, age 80, both hemispheres
97.0
2023
Male, age 76, both hemispheres
96.5
Ventrolateral tegmental area, A5 NE cell group nTPM: 92.8
2840
Female, age 85, both hemispheres
98.4
2456
Female, age 91, both hemispheres
98.0
2161
Male, age 80, both hemispheres
94.4
1959
Male, age 76, both hemispheres
93.1
2449
Male, age 74, both hemispheres
89.3
2359
Male, age 61, both hemispheres
83.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.2
Pig sample
Sample description
nTPM
Pons nTPM: 41.2
Samples: 4
Max nTPM: 46.6
Min nTPM: 34.5
Sample A
Female
46.6
Sample B
Female
34.5
Sample C
Male
37.9
Sample D
Male
45.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
