MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.3 nTPM
HPA Brain:106.1 nTPM
GTEx:27.3 nTPM
FANTOM5:219.1 Scaled Tags Per Million
Pig:44.8 nTPM
Mouse:52.2 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 106.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.8
2586 Male, age 75, left hemisphere 122.1
1830 Male, age 51, unknown 113.0
2666 Male, age 74, left hemisphere 112.3
2019 Male, age 18, unknown 111.2
1833 Male, age 53, unknown 106.3
2411 Female, age 72, unknown 101.9
1870 Female, age 42, unknown 94.9
2219 Male, age 76, both hemispheres 94.7
2828 Female, age 72, unknown 93.6
1827 Male, age 72, unknown 88.0
Dorsal raphe nucleus
nTPM: 85.3
1828 Male, age 53, unknown 94.7
2750 Male, age 76, both hemispheres 92.1
2016 Female, age 72, unknown 90.5
2047 Male, age 72, unknown 79.9
2298 Female, age 72, unknown 69.5
Inferior colliculus
nTPM: 94.9
2849 Male, age 72, unknown 108.3
1848 Female, age 42, unknown 96.4
1890 Male, age 53, unknown 90.7
2097 Female, age 72, unknown 84.1
Median raphe nucleus
nTPM: 65.9
2220 Male, age 76, midline 65.9
Periaquaductal grey, anterior
nTPM: 89.8
2502 Female, age 75, unknown 105.9
1795 Male, age 51, unknown 82.7
1947 Male, age 18, unknown 80.8
Periaquaductal grey, dorsal
nTPM: 86.6
2464 Female, age 72, unknown 99.2
1831 Male, age 72, unknown 92.2
1840 Male, age 53, unknown 81.6
2850 Male, age 76, both hemispheres 73.3
Periaquaductal grey, lateral
nTPM: 81.3
2053 Male, age 18, unknown 85.9
2140 Male, age 76, both hemispheres 81.1
2272 Male, age 74, both hemispheres 76.9
Pretectal area
nTPM: 96.5
2407 Male, age 75, both hemispheres 114.4
1944 Female, age 72, unknown 111.8
1816 Male, age 51, unknown 106.6
1815 Male, age 53, unknown 101.8
2007 Male, age 72, unknown 101.3
2667 Female, age 75, unknown 95.4
1817 Female, age 42, unknown 93.7
2316 Male, age 76, right hemisphere 89.9
2825 Male, age 18, unknown 89.5
2224 Female, age 72, unknown 83.6
2273 Male, age 74, both hemispheres 73.4
Red nucleus
nTPM: 105.3
2588 Male, age 74, left hemisphere 132.8
2785 Male, age 18, unknown 113.8
2503 Female, age 72, unknown 112.6
1904 Male, age 53, unknown 110.8
2769 Male, age 72, unknown 106.0
2584 Male, age 75, left hemisphere 104.7
2227 Male, age 72, unknown 103.8
1865 Male, age 51, unknown 102.2
1821 Female, age 72, unknown 98.4
1954 Female, age 42, unknown 96.0
2823 Male, age 76, right hemisphere 94.0
2725 Female, age 75, unknown 88.0
Substantia nigra
nTPM: 100.8
2699 Male, age 18, unknown 111.5
1916 Female, age 42, unknown 106.7
2409 Female, age 72, unknown 104.5
2583 Male, age 75, right hemisphere 103.8
1851 Male, age 51, unknown 101.9
1889 Female, age 72, unknown 100.8
1941 Male, age 53, unknown 100.1
2665 Male, age 74, both hemispheres 98.1
2590 Female, age 75, unknown 91.2
2241 Male, age 72, unknown 89.4
Superior colliculus
nTPM: 106.1
2664 Male, age 75, both hemispheres 121.6
2668 Female, age 75, unknown 117.3
1913 Female, age 42, unknown 115.0
1995 Male, age 72, unknown 113.5
1895 Male, age 76, right hemisphere 105.0
2087 Female, age 72, unknown 103.7
1839 Male, age 51, unknown 101.6
2587 Male, age 74, left hemisphere 101.0
1796 Male, age 53, unknown 91.8
2261 Male, age 18, unknown 90.9
Ventral tegmental area
nTPM: 89.8
2223 Female, age 72, unknown 97.3
2410 Female, age 72, unknown 96.4
1915 Female, age 42, unknown 89.0
2021 Male, age 53, unknown 88.1
2218 Male, age 76, both hemispheres 84.8
1942 Male, age 51, unknown 83.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 27.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.3
Samples: 139

Max nTPM: 61.5
Min nTPM: 13.0
Std nTPM: 6.8
Median nTPM: 26.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 61.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 50.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 43.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 40.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 40.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 39.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 39.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 38.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 38.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 38.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 37.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 219.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 219.1
FF:10158-103A5 76 years, female 219.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.9
Samples: 4

Max nTPM: 53.3
Min nTPM: 31.1
Sample A Female 42.4
Sample B Female 31.1
Sample C Male 36.9
Sample D Male 53.3
Midbrain
nTPM: 44.9
Samples: 4

Max nTPM: 55.2
Min nTPM: 36.6
Sample A Female 55.2
Sample B Female 44.0
Sample C Male 43.6
Sample D Male 36.6
Periaqueductal gray
nTPM: 37.1
Samples: 3

Max nTPM: 41.2
Min nTPM: 34.9
Sample B Female 41.2
Sample C Male 35.2
Sample D Male 34.9
Superior colliculi
nTPM: 42.7
Samples: 4

Max nTPM: 51.7
Min nTPM: 22.8
Sample A Female 46.8
Sample B Female 22.8
Sample C Male 51.7
Sample D Male 49.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 52.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.3
Samples: 4

Max nTPM: 57.1
Min nTPM: 47.2
Sample A Male 47.2
Sample B Male 52.9
Sample C Female 57.1
Sample D Female 51.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
70611048 Antisense, RP_050630_01_G09, Mouse strain C57BL/6J (56 days, male) 10.7

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