MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.6 nTPM
HPA Brain:73.4 nTPM
GTEx:33.6 nTPM
FANTOM5:23.4 Scaled Tags Per Million
Pig:95.5 nTPM
Mouse:18.4 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 73.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.8
2586 Male, age 75, left hemisphere 92.7
2219 Male, age 76, both hemispheres 77.7
2666 Male, age 74, left hemisphere 71.2
2411 Female, age 72, unknown 69.7
2019 Male, age 18, unknown 67.3
1827 Male, age 72, unknown 66.3
1833 Male, age 53, unknown 66.3
2828 Female, age 72, unknown 64.0
1830 Male, age 51, unknown 63.2
1870 Female, age 42, unknown 59.6
Dorsal raphe nucleus
nTPM: 62.4
2750 Male, age 76, both hemispheres 74.4
2047 Male, age 72, unknown 67.2
2298 Female, age 72, unknown 60.2
1828 Male, age 53, unknown 59.0
2016 Female, age 72, unknown 51.3
Inferior colliculus
nTPM: 55.8
2097 Female, age 72, unknown 58.0
2849 Male, age 72, unknown 56.3
1890 Male, age 53, unknown 56.1
1848 Female, age 42, unknown 52.9
Median raphe nucleus
nTPM: 70.7
2220 Male, age 76, midline 70.7
Periaquaductal grey, anterior
nTPM: 63.9
2502 Female, age 75, unknown 66.3
1795 Male, age 51, unknown 65.0
1947 Male, age 18, unknown 60.4
Periaquaductal grey, dorsal
nTPM: 49.3
1840 Male, age 53, unknown 53.8
2464 Female, age 72, unknown 53.4
1831 Male, age 72, unknown 46.6
2850 Male, age 76, both hemispheres 43.5
Periaquaductal grey, lateral
nTPM: 46.0
2053 Male, age 18, unknown 51.2
2272 Male, age 74, both hemispheres 45.9
2140 Male, age 76, both hemispheres 41.1
Pretectal area
nTPM: 61.2
2007 Male, age 72, unknown 76.3
1816 Male, age 51, unknown 71.7
1815 Male, age 53, unknown 70.5
1817 Female, age 42, unknown 68.4
1944 Female, age 72, unknown 68.2
2407 Male, age 75, both hemispheres 63.3
2825 Male, age 18, unknown 59.7
2224 Female, age 72, unknown 52.0
2316 Male, age 76, right hemisphere 52.0
2667 Female, age 75, unknown 47.3
2273 Male, age 74, both hemispheres 43.8
Red nucleus
nTPM: 68.6
2584 Male, age 75, left hemisphere 81.5
2588 Male, age 74, left hemisphere 81.4
1904 Male, age 53, unknown 71.3
2503 Female, age 72, unknown 68.6
2785 Male, age 18, unknown 68.2
2725 Female, age 75, unknown 67.4
2769 Male, age 72, unknown 66.3
1821 Female, age 72, unknown 66.0
2227 Male, age 72, unknown 63.9
1954 Female, age 42, unknown 63.8
2823 Male, age 76, right hemisphere 62.8
1865 Male, age 51, unknown 62.0
Substantia nigra
nTPM: 73.4
1916 Female, age 42, unknown 93.7
1851 Male, age 51, unknown 82.3
2665 Male, age 74, both hemispheres 77.7
2241 Male, age 72, unknown 73.0
2583 Male, age 75, right hemisphere 71.8
1889 Female, age 72, unknown 69.4
2699 Male, age 18, unknown 69.3
1941 Male, age 53, unknown 67.1
2409 Female, age 72, unknown 64.8
2590 Female, age 75, unknown 64.4
Superior colliculus
nTPM: 63.8
2668 Female, age 75, unknown 88.8
2664 Male, age 75, both hemispheres 68.6
2261 Male, age 18, unknown 65.7
1796 Male, age 53, unknown 65.3
2087 Female, age 72, unknown 63.5
1895 Male, age 76, right hemisphere 58.7
2587 Male, age 74, left hemisphere 58.2
1839 Male, age 51, unknown 57.9
1913 Female, age 42, unknown 55.8
1995 Male, age 72, unknown 55.3
Ventral tegmental area
nTPM: 72.1
2410 Female, age 72, unknown 84.6
2218 Male, age 76, both hemispheres 77.8
2223 Female, age 72, unknown 71.1
1942 Male, age 51, unknown 69.1
1915 Female, age 42, unknown 68.3
2021 Male, age 53, unknown 61.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 33.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.6
Samples: 139

Max nTPM: 55.7
Min nTPM: 14.7
Std nTPM: 8.7
Median nTPM: 33.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 55.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 55.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 55.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 54.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 50.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 50.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 50.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 49.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 49.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 47.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 46.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.4
FF:10158-103A5 76 years, female 23.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 95.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 92.6
Samples: 4

Max nTPM: 109.4
Min nTPM: 59.8
Sample A Female 100.8
Sample B Female 59.8
Sample C Male 100.4
Sample D Male 109.4
Midbrain
nTPM: 95.6
Samples: 4

Max nTPM: 133.1
Min nTPM: 81.1
Sample A Female 133.1
Sample B Female 85.1
Sample C Male 81.1
Sample D Male 83.0
Periaqueductal gray
nTPM: 72.2
Samples: 3

Max nTPM: 77.3
Min nTPM: 65.8
Sample B Female 77.3
Sample C Male 73.4
Sample D Male 65.8
Superior colliculi
nTPM: 75.4
Samples: 4

Max nTPM: 97.5
Min nTPM: 40.1
Sample A Female 86.1
Sample B Female 40.1
Sample C Male 77.9
Sample D Male 97.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.4
Samples: 4

Max nTPM: 19.4
Min nTPM: 17.3
Sample A Male 19.1
Sample B Male 17.3
Sample C Female 17.7
Sample D Female 19.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
1730 Antisense, RP_040526_01_G03, Mouse strain C57BL/6J (56 days, male) 3.1
1731 Antisense, RP_040526_01_G03, Mouse strain C57BL/6J (56 days, male) 0.0

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