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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GAL3ST1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
261.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
244.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
197.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
189.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
166.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
162.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
154.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
146.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
140.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
124.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
119.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
111.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
107.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
96.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
94.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
89.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
87.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
83.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
79.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
77.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
74.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
73.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
61.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
60.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
56.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
53.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
52.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
51.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
50.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
49.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
47.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
44.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
42.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
37.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
36.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
33.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
31.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
29.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
26.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
24.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GAL3ST1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.1
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
192.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
116.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
94.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
58.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
55.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
36.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
2.3
545
Tumor
2.2
813
Tumor
2.1
877
Tumor
1.7
567
Tumor
1.7
481
Tumor
1.5
695
Tumor
1.5
192
Normal
1.4
527
Tumor
1.3
162
Normal
1.3
535
Tumor
1.2
472
Normal
1.1
477
Tumor
1.0
462
Normal
1.0
482
Normal
1.0
125
Tumor
0.9
478
Normal
0.9
571
Tumor
0.9
818
Normal
0.8
958
Normal
0.8
1044
Normal
0.8
474
Normal
0.8
983
Tumor
0.8
447
Tumor
0.8
466
Normal
0.7
746
Normal
0.7
716
Normal
0.7
464
Normal
0.7
186
Normal
0.6
217
Tumor
0.6
868
Normal
0.6
471
Tumor
0.5
912
Normal
0.5
685
Tumor
0.5
147
Tumor
0.5
967
Tumor
0.5
713
Tumor
0.5
214
Normal
0.5
172
Normal
0.5
218
Normal
0.4
224
Normal
0.4
285
Tumor
0.4
852
Normal
0.4
448
Normal
0.4
534
Normal
0.4
976
Normal
0.4
964
Normal
0.4
148
Normal
0.4
283
Tumor
0.4
558
Normal
0.4
744
Normal
0.4
188
Normal
0.4
954
Normal
0.4
537
Tumor
0.3
968
Normal
0.3
884
Normal
0.3
858
Normal
0.3
966
Normal
0.3
1016
Normal
0.3
473
Tumor
0.3
185
Tumor
0.3
756
Normal
0.3
698
Normal
0.3
536
Normal
0.3
981
Tumor
0.3
686
Normal
0.3
286
Normal
0.2
463
Tumor
0.2
574
Normal
0.2
222
Normal
0.2
786
Normal
0.2
461
Tumor
0.2
982
Normal
0.2
742
Normal
0.2
212
Normal
0.2
573
Tumor
0.2
714
Normal
0.2
1046
Normal
0.2
228
Normal
0.2
816
Normal
0.2
538
Normal
0.2
528
Normal
0.1
943
Tumor
0.1
452
Normal
0.1
814
Normal
0.1
196
Normal
0.1
881
Tumor
0.1
284
Normal
0.1
815
Tumor
0.1
738
Normal
0.1
715
Tumor
0.1
722
Normal
0.1
1014
Normal
0.1
851
Tumor
0.1
978
Normal
0.1
874
Normal
0.1
468
Normal
0.1
778
Normal
0.1
984
Normal
0.1
223
Tumor
0.1
696
Normal
0.0
938
Normal
0.0
1043
Tumor
0.0
161
Tumor
0.0
914
Normal
0.0
1045
Tumor
0.0
957
Tumor
0.0
554
Normal
0.0
213
Tumor
0.0
456
Normal
0.0
1013
Tumor
0.0
572
Normal
0.0
467
Tumor
-0.1
956
Normal
-0.1
564
Normal
-0.1
963
Tumor
-0.1
944
Normal
-0.1
227
Tumor
-0.1
824
Normal
-0.1
195
Tumor
-0.1
723
Tumor
-0.1
728
Normal
-0.1
568
Normal
-0.1
191
Tumor
-0.1
126
Normal
-0.2
171
Tumor
-0.2
221
Tumor
-0.2
187
Tumor
-0.2
111
Normal
-0.2
697
Tumor
-0.2
455
Tumor
-0.2
727
Tumor
-0.2
823
Tumor
-0.3
977
Tumor
-0.3
882
Normal
-0.3
862
Normal
-0.3
737
Tumor
-0.3
124
Normal
-0.3
211
Tumor
-0.3
721
Tumor
-0.4
953
Tumor
-0.4
867
Tumor
-0.4
755
Tumor
-0.4
563
Tumor
-0.4
883
Tumor
-0.4
114
Normal
-0.4
975
Tumor
-0.5
866
Normal
-0.5
785
Tumor
-0.5
955
Tumor
-0.5
878
Normal
-0.5
745
Tumor
-0.6
863
Tumor
-0.6
817
Tumor
-0.6
128
Normal
-0.6
952
Normal
-0.6
777
Tumor
-0.6
951
Tumor
-0.6
724
Normal
-0.6
857
Tumor
-0.7
113
Tumor
-0.7
911
Tumor
-0.7
913
Tumor
-0.7
451
Tumor
-0.7
965
Tumor
-0.7
557
Tumor
-0.8
465
Tumor
-0.8
1015
Tumor
-0.8
864
Normal
-0.8
937
Tumor
-0.9
123
Tumor
-0.9
112
Tumor
-0.9
741
Tumor
-0.9
873
Tumor
-0.9
127
Tumor
-1.0
533
Tumor
-1.2
553
Tumor
-1.2
861
Tumor
-1.5
865
Tumor
-1.7
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
487
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
368
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
268
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
297
Tumor
N/A
298
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
